Wall clock time and date at job start Fri Apr 10 2020 20:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47185 * 2 1 4 4 C 1.35314 * 126.66502 * 90.00133 * 3 2 1 5 5 C 1.42274 * 103.92214 * 179.97438 * 4 3 2 6 6 C 1.48329 * 126.93775 * 180.02562 * 5 4 3 7 7 O 1.21498 * 120.00239 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99746 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99847 * 180.02562 * 8 6 5 10 10 H 1.09008 * 109.50142 * 35.06316 * 9 8 6 11 11 C 1.53035 * 109.52558 * 155.11155 * 9 8 6 12 12 C 1.53036 * 109.54208 * 181.29577 * 11 9 8 13 13 C 1.53187 * 109.34322 * 298.68633 * 12 11 9 14 14 N 1.46931 * 108.77328 * 54.61625 * 13 12 11 15 15 C 1.36936 * 120.63067 * 126.41445 * 14 13 12 16 16 H 1.08000 * 120.00367 * 207.67968 * 15 14 13 17 17 C 1.38813 * 120.00195 * 27.67060 * 15 14 13 18 18 N 1.31618 * 119.99784 * 17.36157 * 17 15 14 19 19 Si 1.86798 * 120.00239 * 197.35690 * 17 15 14 20 20 H 1.48497 * 109.46812 * 90.00677 * 19 17 15 21 21 H 1.48507 * 109.46940 * 210.00325 * 19 17 15 22 22 H 1.48497 * 109.47456 * 330.00241 * 19 17 15 23 23 C 1.46924 * 118.73945 * 306.39552 * 14 13 12 24 24 N 1.30983 * 106.12120 * 0.25276 * 5 4 3 25 25 O 1.20909 * 111.43937 * 359.54966 * 24 5 4 26 26 H 1.08996 * 109.47192 * 59.99943 * 1 2 3 27 27 H 1.09004 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47170 * 300.00142 * 1 2 3 29 29 H 1.09000 * 109.47170 * 239.99858 * 2 1 3 30 30 H 1.09003 * 109.46823 * 120.00135 * 2 1 3 31 31 H 1.08003 * 128.04016 * 359.95382 * 4 3 2 32 32 H 0.97001 * 120.00138 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.43059 * 61.29520 * 11 9 8 34 34 H 1.09004 * 109.49059 * 301.34046 * 11 9 8 35 35 H 1.09003 * 109.50075 * 178.72001 * 12 11 9 36 36 H 1.09000 * 109.49507 * 58.65586 * 12 11 9 37 37 H 1.09001 * 109.58655 * 174.40285 * 13 12 11 38 38 H 1.09000 * 109.58941 * 294.69086 * 13 12 11 39 39 H 0.97006 * 120.00403 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.58607 * 173.39814 * 23 14 13 41 41 H 1.09010 * 109.58203 * 293.81790 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3017 2.1826 1.0854 5 6 2.7397 3.4194 0.5354 6 6 3.1673 4.6264 1.2842 7 8 3.1648 4.6201 2.4991 8 7 3.5586 5.7300 0.6167 9 6 3.9814 6.9218 1.3562 10 1 4.5010 6.6203 2.2659 11 6 4.9217 7.7576 0.4849 12 6 5.3892 8.9861 1.2686 13 6 4.1757 9.8464 1.6346 14 7 3.2012 9.0101 2.3485 15 6 2.7204 9.3900 3.5731 16 1 2.3895 8.6425 4.2790 17 6 2.6583 10.7358 3.9074 18 7 2.7276 11.6519 2.9649 19 14 2.4763 11.2468 5.6949 20 1 3.8215 11.4136 6.3014 21 1 1.7369 12.5326 5.7694 22 1 1.7259 10.2007 6.4349 23 6 2.7520 7.7587 1.7233 24 7 2.6843 3.2788 -0.7657 25 8 2.2997 2.1750 -1.0750 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2061 1.9142 2.1272 32 1 3.5602 5.7351 -0.3533 33 1 4.3940 8.0790 -0.4131 34 1 5.7860 7.1565 0.2023 35 1 6.0767 9.5689 0.6556 36 1 5.8958 8.6656 2.1790 37 1 4.4912 10.6688 2.2767 38 1 3.7229 10.2446 0.7266 39 1 2.6839 12.5924 3.1984 40 1 2.1279 7.2038 2.4237 41 1 2.1815 7.9847 0.8223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009258846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:47 Heat of formation + Delta-G solvation = 37.126739 kcal Electronic energy + Delta-G solvation = -23334.269681 eV Core-core repulsion = 19831.871835 eV Total energy + Delta-G solvation = -3502.397846 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -45.24213 -39.63546 -37.37113 -35.26304 -34.40425 -33.94001 -32.38279 -30.48411 -30.43655 -28.79508 -25.28957 -25.02084 -24.36031 -22.75033 -22.12627 -21.60052 -19.97905 -19.25076 -17.99207 -17.65813 -16.79901 -16.75841 -15.66405 -14.99045 -14.83500 -14.81393 -14.59856 -14.01467 -13.74798 -13.70186 -13.44211 -13.14748 -13.00861 -12.43184 -12.40835 -12.21475 -11.85802 -11.83746 -11.37941 -11.12434 -10.91656 -10.81392 -10.56815 -10.26565 -10.23096 -10.20417 -9.90723 -9.68113 -9.67497 -9.64175 -8.89535 -8.40626 -6.67686 -5.77414 -3.19792 0.99574 1.52393 2.70440 3.06080 3.24963 3.41271 3.47617 3.50177 3.88158 4.25084 4.53266 4.59524 4.73358 4.82058 4.91783 5.12897 5.25644 5.31925 5.37440 5.38659 5.53237 5.53948 5.60988 5.68553 5.71220 5.76870 6.05488 6.11710 6.23608 6.50283 6.58986 6.62375 6.67650 6.82190 6.95364 7.35879 7.55402 7.65369 7.84157 7.88186 8.23879 8.46639 9.22848 9.84880 10.40636 11.31359 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024987 B = 0.003256 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.328699 B = 8597.718547 C = 9314.756985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 C -0.036 4.036 4 C -0.181 4.181 5 C -0.018 4.018 6 C 0.593 3.407 7 O -0.517 6.517 8 N -0.705 5.705 9 C 0.125 3.875 10 H 0.089 0.911 11 C -0.115 4.115 12 C -0.139 4.139 13 C 0.166 3.834 14 N -0.587 5.587 15 C -0.251 4.251 16 H 0.068 0.932 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.142 3.858 24 N -0.334 5.334 25 O 0.119 5.881 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.180 0.820 32 H 0.401 0.599 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.020 0.980 39 H 0.254 0.746 40 H 0.058 0.942 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.217 -21.430 -9.124 23.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.079 4.079 3 C -0.099 4.099 4 C -0.203 4.203 5 C -0.177 4.177 6 C 0.375 3.625 7 O -0.391 6.391 8 N -0.355 5.355 9 C 0.020 3.980 10 H 0.107 0.893 11 C -0.153 4.153 12 C -0.179 4.179 13 C 0.041 3.959 14 N -0.310 5.310 15 C -0.381 4.381 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.218 1.218 22 H -0.203 1.203 23 C 0.014 3.986 24 N -0.036 5.036 25 O 0.044 5.956 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.117 0.883 31 H 0.198 0.802 32 H 0.235 0.765 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.108 0.892 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.491 -20.339 -9.180 22.320 hybrid contribution -0.203 0.056 1.078 1.099 sum 0.288 -20.283 -8.101 21.843 Atomic orbital electron populations 1.21820 0.93321 1.02828 1.03121 1.20142 0.96765 0.86067 1.04927 1.24511 1.02588 0.97247 0.85528 1.22457 1.04617 0.91680 1.01549 1.23674 1.05857 0.98156 0.90038 1.16885 0.78034 0.81061 0.86497 1.90834 1.53355 1.82597 1.12346 1.46039 1.65876 1.13075 1.10516 1.21877 0.97984 0.83096 0.95068 0.89259 1.21683 0.97875 0.97241 0.98523 1.22179 1.00401 0.96255 0.99023 1.20857 0.86373 0.92802 0.95900 1.44004 1.47021 1.20279 1.19672 1.19245 1.37851 0.90795 0.90170 0.91473 1.25030 1.00655 0.96265 0.97681 1.70043 1.54151 1.00004 1.30648 0.86252 0.77738 0.77730 0.84879 1.21384 1.21778 1.20347 1.21183 0.92656 0.88282 0.96465 1.74165 1.14440 0.99235 1.15732 1.84762 1.60196 1.17118 1.33476 0.91942 0.91150 0.91860 0.89154 0.88274 0.80240 0.76485 0.92097 0.92967 0.92578 0.92349 0.89166 0.96233 0.93640 0.92305 0.96349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.89 37.16 0.37 -0.36 16 2 C -0.04 -0.20 6.50 -27.88 -0.18 -0.38 16 3 C -0.04 -0.32 6.73 -35.35 -0.24 -0.56 16 4 C -0.18 -2.05 10.92 -39.07 -0.43 -2.48 16 5 C -0.02 -0.25 7.19 -82.53 -0.59 -0.85 16 6 C 0.59 10.14 7.81 -12.10 -0.09 10.04 16 7 O -0.52 -10.55 16.62 5.37 0.09 -10.46 16 8 N -0.70 -11.43 5.08 -54.48 -0.28 -11.70 16 9 C 0.12 2.34 2.60 -67.82 -0.18 2.16 16 10 H 0.09 1.87 7.58 -51.92 -0.39 1.48 16 11 C -0.12 -1.94 5.36 -26.69 -0.14 -2.08 16 12 C -0.14 -2.64 6.08 -26.62 -0.16 -2.80 16 13 C 0.17 3.99 5.31 -3.71 -0.02 3.97 16 14 N -0.59 -15.21 3.00 -172.32 -0.52 -15.72 16 15 C -0.25 -7.15 9.59 -15.06 -0.14 -7.30 16 16 H 0.07 1.92 7.89 -52.49 -0.41 1.51 16 17 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 18 N -0.90 -26.55 11.19 55.49 0.62 -25.93 16 19 Si 0.90 22.25 29.59 -169.99 -5.03 17.22 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.14 3.20 6.09 -3.71 -0.02 3.17 16 24 N -0.33 -4.43 11.84 33.29 0.39 -4.04 16 25 O 0.12 1.32 11.18 17.26 0.19 1.51 16 26 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.18 1.79 8.06 -52.48 -0.42 1.36 16 32 H 0.40 5.63 8.36 -40.82 -0.34 5.29 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 38 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 41 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 LS Contribution 342.52 15.07 5.16 5.16 Total: -1.00 -32.60 342.52 -7.37 -39.97 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -6.08 Total: 1.46 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.92 Total: 2.53 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: 0.22 Total: -57.39 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.28 Total: -8.95 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.60 -7.37 -39.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009258846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.096 kcal (2) G-P(sol) polarization free energy of solvation -32.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds