Wall clock time and date at job start Fri Apr 10 2020 20:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47185 * 2 1 4 4 C 1.35314 * 126.66502 * 90.00133 * 3 2 1 5 5 C 1.42274 * 103.92214 * 179.97438 * 4 3 2 6 6 C 1.48329 * 126.93775 * 180.02562 * 5 4 3 7 7 O 1.21498 * 120.00239 * 359.97438 * 6 5 4 8 8 N 1.34783 * 119.99746 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99847 * 180.02562 * 8 6 5 10 10 H 1.09008 * 109.50142 * 35.06316 * 9 8 6 11 11 C 1.53035 * 109.52558 * 155.11155 * 9 8 6 12 12 C 1.53036 * 109.54208 * 181.29577 * 11 9 8 13 13 C 1.53187 * 109.34322 * 298.68633 * 12 11 9 14 14 N 1.46931 * 108.77328 * 54.61625 * 13 12 11 15 15 C 1.36936 * 120.63067 * 126.41445 * 14 13 12 16 16 H 1.08000 * 120.00367 * 207.67968 * 15 14 13 17 17 C 1.38813 * 120.00195 * 27.67060 * 15 14 13 18 18 N 1.31618 * 119.99784 * 17.36157 * 17 15 14 19 19 Si 1.86798 * 120.00239 * 197.35690 * 17 15 14 20 20 H 1.48497 * 109.46812 * 90.00677 * 19 17 15 21 21 H 1.48507 * 109.46940 * 210.00325 * 19 17 15 22 22 H 1.48497 * 109.47456 * 330.00241 * 19 17 15 23 23 C 1.46924 * 118.73945 * 306.39552 * 14 13 12 24 24 N 1.30983 * 106.12120 * 0.25276 * 5 4 3 25 25 O 1.20909 * 111.43937 * 359.54966 * 24 5 4 26 26 H 1.08996 * 109.47192 * 59.99943 * 1 2 3 27 27 H 1.09004 * 109.47107 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47170 * 300.00142 * 1 2 3 29 29 H 1.09000 * 109.47170 * 239.99858 * 2 1 3 30 30 H 1.09003 * 109.46823 * 120.00135 * 2 1 3 31 31 H 1.08003 * 128.04016 * 359.95382 * 4 3 2 32 32 H 0.97001 * 120.00138 * 0.02562 * 8 6 5 33 33 H 1.09004 * 109.43059 * 61.29520 * 11 9 8 34 34 H 1.09004 * 109.49059 * 301.34046 * 11 9 8 35 35 H 1.09003 * 109.50075 * 178.72001 * 12 11 9 36 36 H 1.09000 * 109.49507 * 58.65586 * 12 11 9 37 37 H 1.09001 * 109.58655 * 174.40285 * 13 12 11 38 38 H 1.09000 * 109.58941 * 294.69086 * 13 12 11 39 39 H 0.97006 * 120.00403 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.58607 * 173.39814 * 23 14 13 41 41 H 1.09010 * 109.58203 * 293.81790 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3017 2.1826 1.0854 5 6 2.7397 3.4194 0.5354 6 6 3.1673 4.6264 1.2842 7 8 3.1648 4.6201 2.4991 8 7 3.5586 5.7300 0.6167 9 6 3.9814 6.9218 1.3562 10 1 4.5010 6.6203 2.2659 11 6 4.9217 7.7576 0.4849 12 6 5.3892 8.9861 1.2686 13 6 4.1757 9.8464 1.6346 14 7 3.2012 9.0101 2.3485 15 6 2.7204 9.3900 3.5731 16 1 2.3895 8.6425 4.2790 17 6 2.6583 10.7358 3.9074 18 7 2.7276 11.6519 2.9649 19 14 2.4763 11.2468 5.6949 20 1 3.8215 11.4136 6.3014 21 1 1.7369 12.5326 5.7694 22 1 1.7259 10.2007 6.4349 23 6 2.7520 7.7587 1.7233 24 7 2.6843 3.2788 -0.7657 25 8 2.2997 2.1750 -1.0750 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.2061 1.9142 2.1272 32 1 3.5602 5.7351 -0.3533 33 1 4.3940 8.0790 -0.4131 34 1 5.7860 7.1565 0.2023 35 1 6.0767 9.5689 0.6556 36 1 5.8958 8.6656 2.1790 37 1 4.4912 10.6688 2.2767 38 1 3.7229 10.2446 0.7266 39 1 2.6839 12.5924 3.1984 40 1 2.1279 7.2038 2.4237 41 1 2.1815 7.9847 0.8223 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009258846.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:47 Heat of formation + Delta-G solvation = 15.531175 kcal Electronic energy + Delta-G solvation = -23335.206135 eV Core-core repulsion = 19831.871835 eV Total energy + Delta-G solvation = -3503.334300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.19682 -41.08164 -39.05809 -36.13584 -35.82146 -35.01983 -34.10562 -32.40104 -31.20787 -30.42663 -27.31501 -26.19847 -24.97369 -23.97332 -23.82097 -23.01591 -21.42807 -20.74683 -18.94494 -18.78409 -18.55542 -17.94724 -17.25114 -16.73565 -16.30166 -15.84711 -15.59157 -15.38614 -15.28441 -15.00106 -14.85395 -14.37742 -14.25706 -14.11620 -13.53234 -13.45725 -13.08092 -12.90943 -12.77716 -12.65395 -12.40842 -12.18163 -12.00848 -11.88380 -11.84437 -11.70567 -11.59096 -11.39308 -11.34718 -10.67106 -10.48416 -10.30287 -8.75480 -7.93790 -5.40008 -0.01452 0.62528 1.43533 1.44863 1.54343 1.71344 1.96882 2.01734 2.47435 2.80869 3.20415 3.43044 3.67831 3.77429 3.88614 4.01452 4.07976 4.15911 4.19267 4.36418 4.40209 4.45036 4.48231 4.71616 4.73077 4.84384 4.93446 4.97063 5.01467 5.07528 5.07940 5.15283 5.19085 5.31070 5.41635 5.48798 5.59254 5.71871 6.24311 6.33083 6.87314 6.99173 7.09104 7.77038 8.27906 9.12274 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.024987 B = 0.003256 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1120.328699 B = 8597.718547 C = 9314.756985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.039 4.039 3 C -0.010 4.010 4 C -0.197 4.197 5 C -0.044 4.044 6 C 0.592 3.408 7 O -0.558 6.558 8 N -0.694 5.694 9 C 0.140 3.860 10 H 0.067 0.933 11 C -0.105 4.105 12 C -0.128 4.128 13 C 0.170 3.830 14 N -0.606 5.606 15 C -0.271 4.271 16 H 0.055 0.945 17 C -0.044 4.044 18 N -0.930 5.930 19 Si 0.969 3.031 20 H -0.281 1.281 21 H -0.289 1.289 22 H -0.274 1.274 23 C 0.145 3.855 24 N -0.344 5.344 25 O 0.130 5.870 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.051 0.949 29 H 0.113 0.887 30 H 0.120 0.880 31 H 0.189 0.811 32 H 0.414 0.586 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.058 0.942 38 H 0.005 0.995 39 H 0.253 0.747 40 H 0.032 0.968 41 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.739 -23.666 -10.262 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.077 4.077 3 C -0.073 4.073 4 C -0.220 4.220 5 C -0.201 4.201 6 C 0.377 3.623 7 O -0.435 6.435 8 N -0.346 5.346 9 C 0.034 3.966 10 H 0.085 0.915 11 C -0.143 4.143 12 C -0.167 4.167 13 C 0.045 3.955 14 N -0.330 5.330 15 C -0.401 4.401 16 H 0.073 0.927 17 C -0.240 4.240 18 N -0.575 5.575 19 Si 0.796 3.204 20 H -0.207 1.207 21 H -0.215 1.215 22 H -0.199 1.199 23 C 0.018 3.982 24 N -0.044 5.044 25 O 0.052 5.948 26 H 0.074 0.926 27 H 0.110 0.890 28 H 0.071 0.929 29 H 0.131 0.869 30 H 0.138 0.862 31 H 0.206 0.794 32 H 0.251 0.749 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.023 0.977 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 1.027 -22.582 -10.360 24.866 hybrid contribution -0.457 0.647 1.369 1.581 sum 0.570 -21.935 -8.991 23.714 Atomic orbital electron populations 1.21837 0.93030 1.03997 1.02258 1.20444 0.96765 0.83350 1.07123 1.25201 1.00058 0.98171 0.83908 1.22663 1.05497 0.91053 1.02767 1.23386 1.08027 0.98013 0.90724 1.17259 0.77001 0.81842 0.86210 1.90806 1.55016 1.83480 1.14198 1.45846 1.65554 1.12151 1.11011 1.21435 0.96204 0.83605 0.95321 0.91450 1.21627 0.98638 0.96202 0.97872 1.22011 0.98349 0.96655 0.99711 1.20750 0.87794 0.92787 0.94189 1.44228 1.47869 1.21414 1.19448 1.19426 1.38295 0.90997 0.91347 0.92702 1.25760 1.00600 0.96058 1.01550 1.70174 1.54891 1.00057 1.32375 0.85256 0.77801 0.77195 0.80130 1.20713 1.21480 1.19915 1.21185 0.94189 0.87449 0.95386 1.74156 1.14788 1.00308 1.15111 1.84737 1.59325 1.16633 1.34071 0.92645 0.88999 0.92942 0.86857 0.86163 0.79382 0.74891 0.90788 0.89451 0.89447 0.93017 0.92377 0.97715 0.93768 0.94902 0.96389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.89 71.98 0.71 -0.32 16 2 C -0.04 -0.25 6.50 29.85 0.19 -0.05 16 3 C -0.01 -0.16 6.73 25.01 0.17 0.01 16 4 C -0.20 -4.26 10.92 22.60 0.25 -4.02 16 5 C -0.04 -1.23 7.19 42.96 0.31 -0.92 16 6 C 0.59 20.51 7.81 86.93 0.68 21.19 16 7 O -0.56 -23.55 16.62 -3.71 -0.06 -23.61 16 8 N -0.69 -22.28 5.08 -444.58 -2.26 -24.54 16 9 C 0.14 5.26 2.60 45.07 0.12 5.38 16 10 H 0.07 2.87 7.58 -2.38 -0.02 2.85 16 11 C -0.11 -3.33 5.36 30.62 0.16 -3.16 16 12 C -0.13 -4.70 6.08 30.67 0.19 -4.51 16 13 C 0.17 8.30 5.31 86.36 0.46 8.76 16 14 N -0.61 -32.39 3.00 -699.10 -2.09 -34.49 16 15 C -0.27 -15.96 9.59 84.03 0.81 -15.15 16 16 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 17 C -0.04 -2.54 4.91 84.86 0.42 -2.12 16 18 N -0.93 -55.91 11.19 21.65 0.24 -55.66 16 19 Si 0.97 46.63 29.59 68.60 2.03 48.66 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 21 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 22 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 23 C 0.15 6.74 6.09 86.36 0.53 7.27 16 24 N -0.34 -8.69 11.84 -49.51 -0.59 -9.28 16 25 O 0.13 2.60 11.18 71.92 0.80 3.41 16 26 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.19 3.61 8.06 -2.91 -0.02 3.59 16 32 H 0.41 11.11 8.36 -92.71 -0.78 10.34 16 33 H 0.07 2.19 8.14 -2.38 -0.02 2.17 16 34 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 3.20 6.04 -2.39 -0.01 3.18 16 38 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 39 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 40 H 0.03 1.65 7.93 -2.39 -0.02 1.63 16 41 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -73.60 342.52 3.32 -70.28 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 0.26 Total: 12.89 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: 4.98 Total: 12.35 kcal Atomic # 7 Polarization: -119.27 SS G_CDS: -4.70 Total: -123.97 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.74 Total: -20.20 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -73.60 3.32 -70.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009258846.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.807 kcal (2) G-P(sol) polarization free energy of solvation -73.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds