Wall clock time and date at job start Fri Apr 10 2020 20:03:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47124 * 2 1 4 4 C 1.35318 * 126.67126 * 90.28202 * 3 2 1 5 5 C 1.42271 * 103.92250 * 180.15154 * 4 3 2 6 6 C 1.48333 * 126.93276 * 179.89003 * 5 4 3 7 7 O 1.21492 * 120.00190 * 359.70623 * 6 5 4 8 8 N 1.34785 * 119.99349 * 179.71055 * 6 5 4 9 9 C 1.46500 * 119.99479 * 180.27411 * 8 6 5 10 10 H 1.08995 * 109.50178 * 324.65988 * 9 8 6 11 11 C 1.53042 * 109.49447 * 204.56252 * 9 8 6 12 12 C 1.53045 * 109.53560 * 178.68497 * 11 9 8 13 13 C 1.53195 * 109.31291 * 61.36622 * 12 11 9 14 14 N 1.46933 * 108.77463 * 305.36352 * 13 12 11 15 15 C 1.36940 * 120.63035 * 233.63393 * 14 13 12 16 16 H 1.07993 * 120.00054 * 152.59537 * 15 14 13 17 17 C 1.38816 * 119.99516 * 332.60041 * 15 14 13 18 18 N 1.31619 * 119.99389 * 159.36389 * 17 15 14 19 19 Si 1.86790 * 120.00296 * 339.36108 * 17 15 14 20 20 H 1.48502 * 109.47291 * 92.90283 * 19 17 15 21 21 H 1.48503 * 109.47233 * 212.90219 * 19 17 15 22 22 H 1.48501 * 109.47206 * 332.90583 * 19 17 15 23 23 C 1.46925 * 118.73904 * 53.60858 * 14 13 12 24 24 N 1.30977 * 106.12409 * 359.62416 * 5 4 3 25 25 O 1.20909 * 111.44089 * 0.24359 * 24 5 4 26 26 H 1.08997 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47509 * 300.00475 * 1 2 3 28 28 H 1.09004 * 109.46849 * 60.00200 * 1 2 3 29 29 H 1.08995 * 109.47509 * 239.99524 * 2 1 3 30 30 H 1.09004 * 109.46849 * 119.99800 * 2 1 3 31 31 H 1.07998 * 128.03277 * 0.02562 * 4 3 2 32 32 H 0.96992 * 119.99915 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.46245 * 298.70240 * 11 9 8 34 34 H 1.08991 * 109.46160 * 58.66455 * 11 9 8 35 35 H 1.09004 * 109.49696 * 301.41046 * 12 11 9 36 36 H 1.08999 * 109.49432 * 181.31481 * 12 11 9 37 37 H 1.09004 * 109.58260 * 185.57923 * 13 12 11 38 38 H 1.08997 * 109.70566 * 65.21886 * 13 12 11 39 39 H 0.97000 * 120.00055 * 179.97438 * 18 17 15 40 40 H 1.08993 * 109.58533 * 186.60455 * 23 14 13 41 41 H 1.09001 * 109.58183 * 66.17918 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3067 2.1809 1.0853 5 6 2.7381 3.4200 0.5352 6 6 3.1648 4.6273 1.2840 7 8 3.1629 4.6208 2.4989 8 7 3.5545 5.7315 0.6165 9 6 3.9817 6.9218 1.3560 10 1 3.3891 7.0170 2.2658 11 6 3.7828 8.1636 0.4838 12 6 4.1980 9.4110 1.2672 13 6 5.6823 9.3093 1.6324 14 7 5.9080 8.0452 2.3467 15 6 6.5206 8.0356 3.5714 16 1 6.3072 7.2453 4.2757 17 6 7.4157 9.0420 3.9076 18 7 7.6923 9.2813 5.1719 19 14 8.2275 10.0565 2.5656 20 1 7.4244 11.2804 2.3159 21 1 9.5959 10.4416 2.9955 22 1 8.3078 9.2542 1.3186 23 6 5.4635 6.7918 1.7222 24 7 2.6878 3.2776 -0.7658 25 8 2.2987 2.1754 -1.0750 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2170 1.9105 2.1270 32 1 3.5563 5.7364 -0.3534 33 1 4.3947 8.0784 -0.4142 34 1 2.7333 8.2447 0.2015 35 1 3.6034 9.4834 2.1779 36 1 4.0342 10.2970 0.6539 37 1 5.9589 10.1460 2.2740 38 1 6.2862 9.3291 0.7252 39 1 8.3181 9.9842 5.4069 40 1 5.5958 5.9675 2.4229 41 1 6.0477 6.6054 0.8210 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009258848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:50 Heat of formation + Delta-G solvation = 43.549640 kcal Electronic energy + Delta-G solvation = -23390.934765 eV Core-core repulsion = 19888.815437 eV Total energy + Delta-G solvation = -3502.119328 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -45.27609 -39.74059 -37.66336 -35.29501 -34.54216 -33.99194 -32.48581 -30.84870 -30.50873 -29.30716 -25.35554 -25.13963 -24.41875 -22.90297 -22.09161 -21.93491 -20.06735 -19.54808 -18.04562 -17.69672 -16.86502 -16.81104 -15.81555 -15.31267 -14.99938 -14.91563 -14.72953 -13.97613 -13.91944 -13.76972 -13.72801 -13.23313 -13.05842 -12.88880 -12.42761 -12.24829 -12.10059 -11.89195 -11.54346 -11.41538 -11.20447 -10.95629 -10.77738 -10.59906 -10.22482 -10.17100 -9.93308 -9.73484 -9.70882 -9.46586 -9.08428 -8.54174 -6.97559 -5.92138 -3.28959 0.95539 1.49066 2.66919 2.98370 3.19384 3.32336 3.49171 3.52196 3.83445 4.21103 4.54470 4.56413 4.70544 4.78037 4.87911 5.00666 5.06018 5.16687 5.26030 5.28868 5.35281 5.41841 5.50813 5.51055 5.65169 5.73318 5.78618 5.91451 6.01522 6.17528 6.29869 6.39989 6.44010 6.58792 6.63944 6.73689 6.90970 7.46750 7.83406 7.97251 8.17808 8.36371 8.95921 9.73624 10.09153 11.23782 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.003208 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.893011 B = 8725.886607 C = 9104.038441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.042 4.042 3 C -0.035 4.035 4 C -0.180 4.180 5 C -0.018 4.018 6 C 0.593 3.407 7 O -0.513 6.513 8 N -0.706 5.706 9 C 0.124 3.876 10 H 0.094 0.906 11 C -0.116 4.116 12 C -0.131 4.131 13 C 0.121 3.879 14 N -0.601 5.601 15 C -0.259 4.259 16 H 0.087 0.913 17 C 0.023 3.977 18 N -0.907 5.907 19 Si 0.883 3.117 20 H -0.288 1.288 21 H -0.303 1.303 22 H -0.271 1.271 23 C 0.144 3.856 24 N -0.335 5.335 25 O 0.119 5.881 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.181 0.819 32 H 0.401 0.599 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.026 0.974 39 H 0.263 0.737 40 H 0.068 0.932 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.472 -15.632 -14.284 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 C -0.098 4.098 4 C -0.203 4.203 5 C -0.177 4.177 6 C 0.376 3.624 7 O -0.386 6.386 8 N -0.357 5.357 9 C 0.019 3.981 10 H 0.112 0.888 11 C -0.154 4.154 12 C -0.171 4.171 13 C -0.005 4.005 14 N -0.325 5.325 15 C -0.387 4.387 16 H 0.105 0.895 17 C -0.175 4.175 18 N -0.550 5.550 19 Si 0.714 3.286 20 H -0.216 1.216 21 H -0.231 1.231 22 H -0.196 1.196 23 C 0.017 3.983 24 N -0.036 5.036 25 O 0.044 5.956 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.198 0.802 32 H 0.236 0.764 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.044 0.956 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -14.042 -14.659 -14.224 24.786 hybrid contribution 0.474 0.366 -0.433 0.738 sum -13.568 -14.293 -14.656 24.560 Atomic orbital electron populations 1.21814 0.93360 1.02845 1.03003 1.20150 0.96720 0.86065 1.05043 1.24515 1.02570 0.97207 0.85489 1.22468 1.04594 0.91595 1.01595 1.23648 1.05896 0.98147 0.90047 1.16887 0.77865 0.81162 0.86507 1.90855 1.53394 1.82101 1.12297 1.45986 1.65876 1.13381 1.10487 1.21829 0.98818 0.82113 0.95327 0.88789 1.21684 1.00662 0.94693 0.98406 1.21997 0.99455 0.95743 0.99876 1.21419 0.93009 0.90189 0.95836 1.44293 1.68361 0.99493 1.20325 1.18954 1.18601 1.12045 0.89136 0.89529 1.25265 0.98047 0.98360 0.95865 1.69843 1.36884 1.32653 1.15628 0.86947 0.78551 0.79895 0.83231 1.21579 1.23144 1.19640 1.21218 0.90317 0.90150 0.96658 1.74157 1.14381 0.99392 1.15710 1.84760 1.60037 1.17275 1.33491 0.91131 0.91911 0.92005 0.89109 0.88188 0.80183 0.76435 0.91950 0.92298 0.91290 0.92089 0.90664 0.95569 0.92760 0.91335 0.95852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.89 37.16 0.37 -0.28 16 2 C -0.04 -0.20 6.50 -27.89 -0.18 -0.38 16 3 C -0.03 -0.30 6.73 -35.35 -0.24 -0.54 16 4 C -0.18 -1.99 10.92 -39.07 -0.43 -2.41 16 5 C -0.02 -0.25 7.19 -82.53 -0.59 -0.84 16 6 C 0.59 9.76 7.81 -12.10 -0.09 9.67 16 7 O -0.51 -10.25 16.62 5.37 0.09 -10.16 16 8 N -0.71 -10.76 5.08 -54.48 -0.28 -11.04 16 9 C 0.12 2.19 2.60 -67.81 -0.18 2.01 16 10 H 0.09 1.88 7.58 -51.93 -0.39 1.49 16 11 C -0.12 -1.78 5.35 -26.69 -0.14 -1.92 16 12 C -0.13 -2.28 6.08 -26.61 -0.16 -2.44 16 13 C 0.12 2.65 4.21 -3.71 -0.02 2.63 16 14 N -0.60 -14.76 2.77 -172.31 -0.48 -15.24 16 15 C -0.26 -7.51 10.04 -15.06 -0.15 -7.66 16 16 H 0.09 2.72 8.05 -52.49 -0.42 2.30 16 17 C 0.02 0.69 5.23 -17.43 -0.09 0.60 16 18 N -0.91 -28.38 13.97 55.49 0.78 -27.61 16 19 Si 0.88 22.67 24.34 -169.99 -4.14 18.54 16 20 H -0.29 -7.06 6.62 56.52 0.37 -6.69 16 21 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 22 H -0.27 -6.84 6.64 56.52 0.38 -6.47 16 23 C 0.14 3.05 6.09 -3.71 -0.02 3.02 16 24 N -0.33 -4.26 11.84 33.29 0.39 -3.86 16 25 O 0.12 1.27 11.18 17.24 0.19 1.46 16 26 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.40 5.20 8.36 -40.82 -0.34 4.86 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.80 4.50 -51.93 -0.23 1.57 16 38 H 0.03 0.56 7.07 -51.93 -0.37 0.20 16 39 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 40 H 0.07 1.57 7.93 -51.93 -0.41 1.16 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 336.08 15.07 5.06 5.06 Total: -1.00 -33.91 336.08 -6.31 -40.22 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.01 Total: 1.16 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -1.93 Total: 1.47 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.42 Total: -57.75 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.28 Total: -8.70 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.14 Total: 18.54 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.91 -6.31 -40.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009258848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.772 kcal (2) G-P(sol) polarization free energy of solvation -33.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds