Wall clock time and date at job start Fri Apr 10 2020 20:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50695 * 109.47124 * 2 1 4 4 C 1.35318 * 126.67126 * 90.28202 * 3 2 1 5 5 C 1.42271 * 103.92250 * 180.15154 * 4 3 2 6 6 C 1.48333 * 126.93276 * 179.89003 * 5 4 3 7 7 O 1.21492 * 120.00190 * 359.70623 * 6 5 4 8 8 N 1.34785 * 119.99349 * 179.71055 * 6 5 4 9 9 C 1.46500 * 119.99479 * 180.27411 * 8 6 5 10 10 H 1.08995 * 109.50178 * 324.65988 * 9 8 6 11 11 C 1.53042 * 109.49447 * 204.56252 * 9 8 6 12 12 C 1.53045 * 109.53560 * 178.68497 * 11 9 8 13 13 C 1.53195 * 109.31291 * 61.36622 * 12 11 9 14 14 N 1.46933 * 108.77463 * 305.36352 * 13 12 11 15 15 C 1.36940 * 120.63035 * 233.63393 * 14 13 12 16 16 H 1.07993 * 120.00054 * 152.59537 * 15 14 13 17 17 C 1.38816 * 119.99516 * 332.60041 * 15 14 13 18 18 N 1.31619 * 119.99389 * 159.36389 * 17 15 14 19 19 Si 1.86790 * 120.00296 * 339.36108 * 17 15 14 20 20 H 1.48502 * 109.47291 * 92.90283 * 19 17 15 21 21 H 1.48503 * 109.47233 * 212.90219 * 19 17 15 22 22 H 1.48501 * 109.47206 * 332.90583 * 19 17 15 23 23 C 1.46925 * 118.73904 * 53.60858 * 14 13 12 24 24 N 1.30977 * 106.12409 * 359.62416 * 5 4 3 25 25 O 1.20909 * 111.44089 * 0.24359 * 24 5 4 26 26 H 1.08997 * 109.47249 * 180.02562 * 1 2 3 27 27 H 1.08995 * 109.47509 * 300.00475 * 1 2 3 28 28 H 1.09004 * 109.46849 * 60.00200 * 1 2 3 29 29 H 1.08995 * 109.47509 * 239.99524 * 2 1 3 30 30 H 1.09004 * 109.46849 * 119.99800 * 2 1 3 31 31 H 1.07998 * 128.03277 * 0.02562 * 4 3 2 32 32 H 0.96992 * 119.99915 * 359.97438 * 8 6 5 33 33 H 1.09003 * 109.46245 * 298.70240 * 11 9 8 34 34 H 1.08991 * 109.46160 * 58.66455 * 11 9 8 35 35 H 1.09004 * 109.49696 * 301.41046 * 12 11 9 36 36 H 1.08999 * 109.49432 * 181.31481 * 12 11 9 37 37 H 1.09004 * 109.58260 * 185.57923 * 13 12 11 38 38 H 1.08997 * 109.70566 * 65.21886 * 13 12 11 39 39 H 0.97000 * 120.00055 * 179.97438 * 18 17 15 40 40 H 1.08993 * 109.58533 * 186.60455 * 23 14 13 41 41 H 1.09001 * 109.58183 * 66.17918 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3067 2.1809 1.0853 5 6 2.7381 3.4200 0.5352 6 6 3.1648 4.6273 1.2840 7 8 3.1629 4.6208 2.4989 8 7 3.5545 5.7315 0.6165 9 6 3.9817 6.9218 1.3560 10 1 3.3891 7.0170 2.2658 11 6 3.7828 8.1636 0.4838 12 6 4.1980 9.4110 1.2672 13 6 5.6823 9.3093 1.6324 14 7 5.9080 8.0452 2.3467 15 6 6.5206 8.0356 3.5714 16 1 6.3072 7.2453 4.2757 17 6 7.4157 9.0420 3.9076 18 7 7.6923 9.2813 5.1719 19 14 8.2275 10.0565 2.5656 20 1 7.4244 11.2804 2.3159 21 1 9.5959 10.4416 2.9955 22 1 8.3078 9.2542 1.3186 23 6 5.4635 6.7918 1.7222 24 7 2.6878 3.2776 -0.7658 25 8 2.2987 2.1754 -1.0750 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.2170 1.9105 2.1270 32 1 3.5563 5.7364 -0.3534 33 1 4.3947 8.0784 -0.4142 34 1 2.7333 8.2447 0.2015 35 1 3.6034 9.4834 2.1779 36 1 4.0342 10.2970 0.6539 37 1 5.9589 10.1460 2.2740 38 1 6.2862 9.3291 0.7252 39 1 8.3181 9.9842 5.4069 40 1 5.5958 5.9675 2.4229 41 1 6.0477 6.6054 0.8210 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009258848.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:49 Heat of formation + Delta-G solvation = 18.952308 kcal Electronic energy + Delta-G solvation = -23392.001385 eV Core-core repulsion = 19888.815437 eV Total energy + Delta-G solvation = -3503.185949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.19911 -41.13287 -39.26217 -36.20191 -35.83063 -35.02952 -34.25464 -32.74545 -31.28395 -30.77151 -27.29116 -26.31507 -24.99142 -24.07095 -23.80131 -23.20208 -21.50746 -20.89112 -18.96311 -18.83349 -18.57691 -17.97688 -17.45405 -17.00906 -16.42662 -15.74666 -15.71684 -15.48582 -15.38496 -15.04536 -14.93645 -14.60432 -14.37398 -14.17347 -13.80056 -13.49832 -13.36664 -12.95900 -12.85359 -12.67364 -12.49308 -12.41001 -11.92371 -11.84728 -11.79065 -11.60453 -11.58111 -11.45706 -11.37613 -10.84648 -10.48990 -10.35670 -8.98988 -8.20548 -5.55202 -0.02543 0.61624 1.27950 1.40062 1.50314 1.68701 1.95658 1.99953 2.38582 2.77723 3.02066 3.28187 3.47859 3.72943 3.87985 3.94579 4.01606 4.07576 4.17462 4.25494 4.34742 4.36287 4.45180 4.59011 4.62581 4.71646 4.85290 4.92654 4.95503 4.96287 5.00369 5.08251 5.12048 5.15109 5.22244 5.41415 5.43339 5.80386 6.07132 6.23152 6.83445 6.88407 6.98249 7.55145 7.93248 8.99700 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.032404 B = 0.003208 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.893011 B = 8725.886607 C = 9104.038441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.041 4.041 3 C -0.009 4.009 4 C -0.199 4.199 5 C -0.043 4.043 6 C 0.592 3.408 7 O -0.559 6.559 8 N -0.693 5.693 9 C 0.136 3.864 10 H 0.063 0.937 11 C -0.107 4.107 12 C -0.124 4.124 13 C 0.112 3.888 14 N -0.616 5.616 15 C -0.258 4.258 16 H 0.038 0.962 17 C -0.036 4.036 18 N -0.958 5.958 19 Si 0.958 3.042 20 H -0.265 1.265 21 H -0.310 1.310 22 H -0.259 1.259 23 C 0.145 3.855 24 N -0.342 5.342 25 O 0.130 5.870 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.112 0.888 30 H 0.118 0.882 31 H 0.187 0.813 32 H 0.417 0.583 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.264 0.736 40 H 0.033 0.967 41 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.699 -16.098 -18.181 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.078 4.078 3 C -0.072 4.072 4 C -0.222 4.222 5 C -0.201 4.201 6 C 0.376 3.624 7 O -0.436 6.436 8 N -0.345 5.345 9 C 0.030 3.970 10 H 0.081 0.919 11 C -0.145 4.145 12 C -0.164 4.164 13 C -0.012 4.012 14 N -0.341 5.341 15 C -0.388 4.388 16 H 0.055 0.945 17 C -0.230 4.230 18 N -0.603 5.603 19 Si 0.785 3.215 20 H -0.191 1.191 21 H -0.238 1.238 22 H -0.183 1.183 23 C 0.018 3.982 24 N -0.041 5.041 25 O 0.052 5.948 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.204 0.796 32 H 0.254 0.746 33 H 0.104 0.896 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.301 -15.114 -18.195 28.171 hybrid contribution 0.775 0.328 0.807 1.166 sum -14.527 -14.786 -17.388 27.056 Atomic orbital electron populations 1.21826 0.92772 1.04005 1.02360 1.20447 0.96996 0.83380 1.07013 1.25173 1.00049 0.98082 0.83889 1.22661 1.05637 0.91151 1.02734 1.23363 1.07985 0.97972 0.90746 1.17273 0.76941 0.81989 0.86157 1.90831 1.55327 1.83025 1.14399 1.45787 1.65171 1.12461 1.11041 1.21450 0.95528 0.84484 0.95495 0.91876 1.21660 1.03153 0.91678 0.97964 1.21919 0.95633 0.98509 1.00325 1.21584 0.96520 0.87741 0.95391 1.44354 1.68566 1.01804 1.19383 1.18777 1.19010 1.10658 0.90311 0.94463 1.25988 0.98612 1.00278 0.98151 1.69992 1.38056 1.34230 1.18051 0.85749 0.76746 0.78975 0.79988 1.19087 1.23841 1.18336 1.21252 0.93043 0.87880 0.95979 1.74140 1.14633 1.00400 1.14961 1.84736 1.59188 1.16822 1.34009 0.89100 0.92824 0.92431 0.86938 0.86405 0.79582 0.74623 0.89571 0.89094 0.92905 0.88098 0.92898 0.93814 0.92721 0.94865 0.94130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 71.98 0.71 -0.15 16 2 C -0.04 -0.25 6.50 29.85 0.19 -0.06 16 3 C -0.01 -0.13 6.73 25.01 0.17 0.03 16 4 C -0.20 -4.26 10.92 22.60 0.25 -4.01 16 5 C -0.04 -1.17 7.19 42.96 0.31 -0.86 16 6 C 0.59 19.90 7.81 86.93 0.68 20.58 16 7 O -0.56 -23.62 16.62 -3.69 -0.06 -23.68 16 8 N -0.69 -20.64 5.08 -444.56 -2.26 -22.90 16 9 C 0.14 4.76 2.60 45.07 0.12 4.87 16 10 H 0.06 2.62 7.58 -2.39 -0.02 2.60 16 11 C -0.11 -2.89 5.35 30.62 0.16 -2.73 16 12 C -0.12 -3.96 6.08 30.67 0.19 -3.77 16 13 C 0.11 4.67 4.21 86.36 0.36 5.04 16 14 N -0.62 -30.67 2.77 -699.08 -1.94 -32.61 16 15 C -0.26 -15.70 10.04 84.03 0.84 -14.86 16 16 H 0.04 2.56 8.05 -2.91 -0.02 2.54 16 17 C -0.04 -2.16 5.23 84.86 0.44 -1.72 16 18 N -0.96 -62.46 13.97 21.65 0.30 -62.16 16 19 Si 0.96 47.27 24.34 68.60 1.67 48.94 16 20 H -0.26 -12.00 6.62 99.48 0.66 -11.34 16 21 H -0.31 -15.50 7.11 99.48 0.71 -14.79 16 22 H -0.26 -12.14 6.64 99.48 0.66 -11.48 16 23 C 0.15 6.24 6.09 86.36 0.53 6.77 16 24 N -0.34 -8.20 11.84 -49.52 -0.59 -8.79 16 25 O 0.13 2.49 11.18 71.88 0.80 3.29 16 26 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 27 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.11 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.19 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.42 9.92 8.36 -92.71 -0.78 9.14 16 33 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.10 2.47 8.14 -2.39 -0.02 2.46 16 37 H 0.05 2.44 4.50 -2.38 -0.01 2.43 16 38 H 0.04 1.70 7.07 -2.39 -0.02 1.68 16 39 H 0.26 16.16 8.31 -92.71 -0.77 15.39 16 40 H 0.03 1.62 7.93 -2.39 -0.02 1.60 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -79.00 336.08 3.06 -75.94 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.17 Total: 12.83 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: 4.95 Total: 9.14 kcal Atomic # 7 Polarization: -121.98 SS G_CDS: -4.48 Total: -126.46 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: 0.74 Total: -20.39 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.67 Total: 48.94 kcal Total: -79.00 3.06 -75.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009258848.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.895 kcal (2) G-P(sol) polarization free energy of solvation -79.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds