Wall clock time and date at job start Fri Apr 10 2020 20:03:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 N 1.29934 * 125.37234 * 90.00157 * 3 2 1 5 5 C 1.36076 * 108.47026 * 179.97438 * 4 3 2 6 6 C 1.47423 * 126.44216 * 180.02562 * 5 4 3 7 7 O 1.21616 * 119.99246 * 179.97438 * 6 5 4 8 8 N 1.34771 * 120.00342 * 359.97052 * 6 5 4 9 9 C 1.46500 * 119.99996 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.88738 * 328.88224 * 9 8 6 11 11 C 1.55157 * 111.00535 * 205.00218 * 9 8 6 12 12 C 1.54320 * 102.94311 * 277.42952 * 11 9 8 13 13 N 1.47019 * 107.27074 * 337.80651 * 12 11 9 14 14 C 1.36935 * 125.64830 * 178.98858 * 13 12 11 15 15 H 1.08000 * 120.00166 * 179.97438 * 14 13 12 16 16 C 1.38810 * 119.99826 * 359.97438 * 14 13 12 17 17 N 1.31615 * 120.00165 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99783 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47530 * 59.99857 * 18 16 14 20 20 H 1.48504 * 109.47184 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46864 * 299.99609 * 18 16 14 22 22 C 1.47430 * 108.70401 * 358.94201 * 13 12 11 23 23 C 1.36083 * 107.10555 * 359.97438 * 5 4 3 24 24 C 1.50697 * 126.52738 * 180.02562 * 23 5 4 25 25 O 1.34042 * 125.37957 * 269.69446 * 3 2 1 26 26 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 31 31 H 0.96996 * 119.99979 * 0.02562 * 8 6 5 32 32 H 1.09007 * 110.71665 * 35.79321 * 11 9 8 33 33 H 1.09004 * 110.71777 * 158.88181 * 11 9 8 34 34 H 1.08997 * 109.87960 * 97.22687 * 12 11 9 35 35 H 1.08998 * 109.87957 * 218.38692 * 12 11 9 36 36 H 0.97002 * 119.99853 * 180.02562 * 17 16 14 37 37 H 1.08999 * 110.36408 * 265.29142 * 22 13 12 38 38 H 1.08996 * 110.36550 * 142.96496 * 22 13 12 39 39 H 1.09004 * 109.46849 * 90.00386 * 24 23 5 40 40 H 1.09007 * 109.47295 * 210.00265 * 24 23 5 41 41 H 1.08999 * 109.47223 * 330.00385 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2831 2.1300 1.0595 5 6 2.7176 3.3574 0.6639 6 6 3.1126 4.4721 1.5440 7 8 3.4856 5.5245 1.0619 8 7 3.0601 4.3251 2.8826 9 6 3.4532 5.4328 3.7572 10 1 4.2276 6.0410 3.2898 11 6 3.9170 4.9100 5.1425 12 6 2.5871 4.7085 5.8988 13 7 1.5811 5.5602 5.2476 14 6 0.2630 5.6552 5.6063 15 1 -0.3986 6.3132 5.0625 16 6 -0.2229 4.9058 6.6689 17 7 0.5832 4.1035 7.3313 18 14 -2.0212 5.0349 7.1577 19 1 -2.8758 4.6300 6.0127 20 1 -2.2857 4.1399 8.3129 21 1 -2.3319 6.4369 7.5358 22 6 2.2268 6.2959 4.1451 23 6 2.7201 3.3616 -0.6970 24 6 3.1261 4.5058 -1.5896 25 8 2.2965 2.1506 -1.0929 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.7629 3.4856 3.2670 32 1 4.4492 3.9643 5.0393 33 1 4.5412 5.6494 5.6444 34 1 2.2821 3.6637 5.8404 35 1 2.7049 5.0047 6.9412 36 1 0.2435 3.5795 8.0736 37 1 2.5480 7.2810 4.4834 38 1 1.5449 6.3878 3.2998 39 1 4.1927 4.4384 -1.8042 40 1 2.5640 4.4563 -2.5223 41 1 2.9154 5.4504 -1.0881 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001015830714.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:03:54 Heat of formation + Delta-G solvation = 2.888579 kcal Electronic energy + Delta-G solvation = -23789.898602 eV Core-core repulsion = 20286.016078 eV Total energy + Delta-G solvation = -3503.882524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.45770 -39.39180 -37.19066 -35.11051 -34.15445 -33.67229 -31.79880 -31.60356 -29.18281 -27.69070 -26.82325 -24.79994 -24.22256 -22.94717 -21.47560 -20.29208 -19.98176 -19.72117 -17.87813 -17.01095 -16.77396 -15.96477 -15.68564 -14.89491 -14.63992 -14.56307 -14.49728 -13.90230 -13.74160 -13.59406 -13.33760 -12.99356 -12.74532 -12.51569 -12.41672 -11.95638 -11.89180 -11.77332 -11.43338 -11.21685 -10.92795 -10.85938 -10.73645 -10.67835 -10.33217 -10.12895 -9.92066 -9.75373 -9.63784 -8.87249 -8.64910 -8.44873 -6.77957 -5.67786 -3.00258 1.10957 2.05825 2.41042 3.39406 3.43161 3.47102 3.48345 3.54171 3.85665 4.53495 4.54087 4.80219 4.86821 4.90473 5.09491 5.17855 5.33424 5.37072 5.41973 5.49793 5.51941 5.53754 5.68042 5.80651 5.82394 5.88310 5.92115 5.97976 6.10222 6.25253 6.41325 6.53283 6.55584 6.71148 7.05328 7.47682 7.57772 7.61054 7.83521 7.96257 8.29038 8.50135 9.25966 9.85984 10.51894 11.44175 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.013965 B = 0.004693 C = 0.003928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.534260 B = 5965.382962 C = 7126.792730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.024 4.024 3 C 0.190 3.810 4 N -0.450 5.450 5 C -0.067 4.067 6 C 0.601 3.399 7 O -0.547 6.547 8 N -0.683 5.683 9 C 0.126 3.874 10 H 0.092 0.908 11 C -0.153 4.153 12 C 0.176 3.824 13 N -0.603 5.603 14 C -0.225 4.225 15 H 0.075 0.925 16 C -0.008 4.008 17 N -0.923 5.923 18 Si 0.911 3.089 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.126 3.874 23 C 0.031 3.969 24 C -0.073 4.073 25 O -0.200 6.200 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.108 0.892 30 H 0.092 0.908 31 H 0.412 0.588 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.045 0.955 36 H 0.252 0.748 37 H 0.029 0.971 38 H 0.041 0.959 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.783 -6.867 -16.436 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.062 4.062 3 C -0.019 4.019 4 N -0.179 5.179 5 C -0.188 4.188 6 C 0.386 3.614 7 O -0.427 6.427 8 N -0.332 5.332 9 C 0.021 3.979 10 H 0.110 0.890 11 C -0.192 4.192 12 C 0.051 3.949 13 N -0.330 5.330 14 C -0.353 4.353 15 H 0.093 0.907 16 C -0.204 4.204 17 N -0.571 5.571 18 Si 0.742 3.258 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.212 1.212 22 C -0.001 4.001 23 C -0.025 4.025 24 C -0.129 4.129 25 O -0.087 6.087 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.248 0.752 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.833 -6.426 -15.949 18.157 hybrid contribution -1.117 -0.223 -0.076 1.141 sum 4.717 -6.648 -16.025 17.979 Atomic orbital electron populations 1.21807 0.92938 1.03029 1.03280 1.20090 0.97011 0.83884 1.05196 1.26230 1.00446 0.96943 0.78260 1.70795 1.14760 1.02583 1.29785 1.21597 1.10367 0.94524 0.92273 1.16667 0.77738 0.84915 0.82097 1.90735 1.49216 1.27352 1.75350 1.45655 1.64997 1.17864 1.04657 1.22221 0.97589 0.88207 0.89893 0.88995 1.23229 1.00433 1.00729 0.94835 1.21173 0.83480 0.95548 0.94693 1.44458 1.06239 1.48480 1.33835 1.18998 0.83813 1.20971 1.11533 0.90665 1.24762 0.98007 0.99222 0.98402 1.69940 1.33464 1.30281 1.23418 0.86212 0.84620 0.77292 0.77717 1.21306 1.21603 1.21216 1.21939 0.92786 0.93774 0.91632 1.23688 0.98650 0.85595 0.94569 1.20562 1.02195 0.92624 0.97538 1.84292 1.64085 1.22290 1.38045 0.91295 0.90835 0.92251 0.87358 0.88963 0.75225 0.91572 0.90838 0.93531 0.93718 0.93779 0.95319 0.94023 0.89250 0.90418 0.86841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.89 37.16 0.37 -0.90 16 2 C -0.02 -0.21 6.56 -27.88 -0.18 -0.39 16 3 C 0.19 2.49 7.56 -13.08 -0.10 2.39 16 4 N -0.45 -7.27 11.06 -7.65 -0.08 -7.35 16 5 C -0.07 -1.12 6.99 -83.02 -0.58 -1.70 16 6 C 0.60 10.98 7.81 -12.52 -0.10 10.88 16 7 O -0.55 -10.46 14.44 5.26 0.08 -10.39 16 8 N -0.68 -12.76 5.18 -52.80 -0.27 -13.03 16 9 C 0.13 2.38 3.43 -65.78 -0.23 2.15 16 10 H 0.09 1.63 7.54 -51.93 -0.39 1.24 16 11 C -0.15 -2.84 6.55 -24.90 -0.16 -3.01 16 12 C 0.18 4.23 5.36 -3.07 -0.02 4.22 16 13 N -0.60 -15.62 3.39 -170.08 -0.58 -16.20 16 14 C -0.22 -6.40 10.28 -15.06 -0.15 -6.55 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.23 5.49 -17.43 -0.10 -0.32 16 17 N -0.92 -27.19 10.31 55.49 0.57 -26.61 16 18 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 19 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.13 2.77 6.93 -2.53 -0.02 2.75 16 23 C 0.03 0.44 7.44 -35.08 -0.26 0.18 16 24 C -0.07 -0.78 9.88 36.00 0.36 -0.42 16 25 O -0.20 -2.63 10.73 6.52 0.07 -2.56 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.41 7.92 8.40 -40.82 -0.34 7.58 16 32 H 0.07 1.11 8.14 -51.92 -0.42 0.69 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.05 1.23 7.38 -51.93 -0.38 0.85 16 35 H 0.04 1.19 7.51 -51.93 -0.39 0.80 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.11 1.39 6.48 -51.93 -0.34 1.05 16 LS Contribution 343.16 15.07 5.17 5.17 Total: -1.00 -32.96 343.16 -7.28 -40.24 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -6.04 Total: 3.98 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: -1.17 Total: 9.27 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: -0.36 Total: -63.19 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: 0.15 Total: -12.94 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.96 -7.28 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001015830714.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.133 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds