Wall clock time and date at job start Fri Apr 10 2020 20:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47458 * 2 1 4 4 O 1.33496 * 126.82864 * 270.16809 * 3 2 1 5 5 N 1.20652 * 113.15477 * 180.30432 * 4 3 2 6 6 C 1.30020 * 112.30273 * 359.72600 * 5 4 3 7 7 C 1.50698 * 127.33268 * 179.97438 * 6 5 4 8 8 C 1.37353 * 126.83046 * 89.99855 * 3 2 1 9 9 C 1.47407 * 128.56267 * 359.97438 * 8 3 2 10 10 O 1.21606 * 119.99683 * 269.69758 * 9 8 3 11 11 N 1.34777 * 119.99983 * 89.70291 * 9 8 3 12 12 C 1.46497 * 119.99762 * 179.97438 * 11 9 8 13 13 H 1.08996 * 110.78262 * 36.78476 * 12 11 9 14 14 C 1.55159 * 110.71743 * 160.02139 * 12 11 9 15 15 C 1.55129 * 101.48377 * 82.69799 * 14 12 11 16 16 N 1.47421 * 104.72458 * 37.29063 * 15 14 12 17 17 C 1.36945 * 125.64870 * 155.81551 * 16 15 14 18 18 H 1.07999 * 120.00077 * 179.69717 * 17 16 15 19 19 C 1.38812 * 119.99637 * 359.69551 * 17 16 15 20 20 N 1.31617 * 120.00227 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99854 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47118 * 90.00067 * 21 19 17 23 23 H 1.48499 * 109.47293 * 210.00071 * 21 19 17 24 24 H 1.48504 * 109.47104 * 330.00316 * 21 19 17 25 25 C 1.47018 * 108.70379 * 335.55582 * 16 15 14 26 26 H 1.09002 * 109.46844 * 59.99534 * 1 2 3 27 27 H 1.08994 * 109.47508 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46879 * 300.00569 * 1 2 3 29 29 H 1.09000 * 109.46939 * 239.99914 * 2 1 3 30 30 H 1.09006 * 109.47061 * 120.00001 * 2 1 3 31 31 H 1.09001 * 109.47009 * 270.03628 * 7 6 5 32 32 H 1.08999 * 109.47573 * 30.03493 * 7 6 5 33 33 H 1.09004 * 109.46947 * 150.03834 * 7 6 5 34 34 H 0.96994 * 119.99689 * 359.97438 * 11 9 8 35 35 H 1.09004 * 111.00410 * 200.93528 * 14 12 11 36 36 H 1.08993 * 111.00686 * 324.74875 * 14 12 11 37 37 H 1.08996 * 110.49705 * 278.45279 * 15 14 12 38 38 H 1.08997 * 110.34301 * 156.05884 * 15 14 12 39 39 H 0.97005 * 120.00046 * 179.97438 * 20 19 17 40 40 H 1.09010 * 109.88204 * 120.70275 * 25 16 15 41 41 H 1.08994 * 109.88560 * 241.86474 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2963 2.1763 -1.0685 5 7 2.6934 3.2793 -0.7834 6 6 2.7612 3.4622 0.5021 7 6 3.2101 4.7055 1.2259 8 6 2.3069 2.1971 1.0994 9 6 2.1824 1.8468 2.5258 10 8 1.1401 2.0589 3.1152 11 7 3.2239 1.2916 3.1767 12 6 3.1003 0.9440 4.5945 13 1 2.0996 0.5731 4.8160 14 6 4.1747 -0.0996 4.9994 15 6 5.4062 0.8084 5.2555 16 7 4.8526 2.0230 5.8812 17 6 5.5392 2.8871 6.6919 18 1 5.0428 3.7555 7.0991 19 6 6.8734 2.6467 6.9904 20 7 7.4786 1.5886 6.4938 21 14 7.8103 3.8257 8.0956 22 1 7.6736 3.3930 9.5097 23 1 9.2457 3.8264 7.7148 24 1 7.2565 5.1949 7.9412 25 6 3.4429 2.1564 5.4857 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 4.2853 4.6573 1.3983 32 1 2.9782 5.5820 0.6208 33 1 2.6916 4.7765 2.1820 34 1 4.0551 1.1222 2.7065 35 1 3.8817 -0.6308 5.9051 36 1 4.3680 -0.7976 4.1849 37 1 5.8991 1.0569 4.3157 38 1 6.1047 0.3173 5.9330 39 1 8.4110 1.4208 6.7021 40 1 2.8077 2.1565 6.3717 41 1 3.3009 3.0804 4.9253 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016229854.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:04:01 Heat of formation + Delta-G solvation = 42.657974 kcal Electronic energy + Delta-G solvation = -23983.101525 eV Core-core repulsion = 20480.943531 eV Total energy + Delta-G solvation = -3502.157994 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -44.92959 -39.62272 -37.27794 -34.98371 -34.57049 -33.86648 -31.85213 -30.45015 -29.21078 -28.81080 -27.35988 -25.12249 -24.34146 -23.74185 -21.10645 -20.26451 -19.92165 -19.83033 -18.04606 -17.69721 -16.90884 -16.43555 -15.95818 -15.25040 -14.74462 -14.45915 -14.35053 -13.85565 -13.73634 -13.43044 -13.28732 -13.16495 -12.99644 -12.67880 -12.55529 -12.08286 -11.84417 -11.67832 -11.66402 -11.12719 -11.03356 -10.92943 -10.82469 -10.52787 -10.16072 -10.06771 -9.91606 -9.87420 -9.62414 -9.47623 -8.84369 -8.67218 -6.88406 -5.70216 -3.11454 1.22254 1.87020 2.49331 2.76186 3.37410 3.39850 3.43244 3.44740 4.07133 4.15040 4.45833 4.71279 4.72218 4.86504 4.99084 5.08942 5.26886 5.35785 5.39869 5.44682 5.47810 5.52178 5.57975 5.61385 5.68843 5.70644 5.79701 5.93312 6.02568 6.18407 6.28702 6.41887 6.46110 6.66508 6.95105 7.37475 7.57588 7.65780 7.78280 8.15678 8.27615 8.32000 9.17690 9.78360 10.42242 11.33894 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.021441 B = 0.004055 C = 0.003729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.574278 B = 6902.676466 C = 7505.999799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.045 4.045 3 C 0.015 3.985 4 O 0.095 5.905 5 N -0.359 5.359 6 C 0.059 3.941 7 C -0.080 4.080 8 C -0.243 4.243 9 C 0.598 3.402 10 O -0.530 6.530 11 N -0.697 5.697 12 C 0.130 3.870 13 H 0.090 0.910 14 C -0.153 4.153 15 C 0.151 3.849 16 N -0.603 5.603 17 C -0.221 4.221 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.924 5.924 21 Si 0.914 3.086 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.128 3.872 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.402 0.598 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.010 0.990 38 H 0.110 0.890 39 H 0.252 0.748 40 H 0.033 0.967 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.112 -4.526 -13.102 17.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.083 4.083 3 C -0.049 4.049 4 O 0.034 5.966 5 N -0.066 5.066 6 C -0.103 4.103 7 C -0.138 4.138 8 C -0.250 4.250 9 C 0.382 3.618 10 O -0.407 6.407 11 N -0.347 5.347 12 C 0.026 3.974 13 H 0.108 0.892 14 C -0.192 4.192 15 C 0.026 3.974 16 N -0.329 5.329 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.573 5.573 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.001 3.999 26 H 0.080 0.920 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.237 0.763 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.028 0.972 38 H 0.127 0.873 39 H 0.063 0.937 40 H 0.051 0.949 41 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.382 -3.588 -13.625 17.501 hybrid contribution 0.890 0.411 0.991 1.394 sum -9.491 -3.177 -12.635 16.119 Atomic orbital electron populations 1.21795 0.92904 1.02970 1.03259 1.20232 0.97221 0.85805 1.05057 1.24635 0.98898 0.96145 0.85203 1.84507 1.61537 1.17634 1.32950 1.73602 1.17648 0.98721 1.16647 1.24788 0.99797 0.96818 0.88891 1.20263 1.02698 0.91069 0.99723 1.22014 1.12225 0.95419 0.95350 1.16834 0.83850 0.77435 0.83714 1.90807 1.28731 1.53382 1.67745 1.45987 1.15258 1.61703 1.11731 1.22072 0.99915 0.96636 0.78809 0.89223 1.23386 0.97915 0.97150 1.00726 1.22012 0.92151 0.86050 0.97217 1.44507 1.05663 1.26787 1.55957 1.19090 0.92684 1.02716 1.20438 0.90496 1.24760 0.96641 0.98402 1.00790 1.69765 1.11148 1.27837 1.48502 0.86074 0.79135 0.80074 0.80233 1.21555 1.21666 1.20752 1.21681 0.87940 0.95023 0.95282 0.91995 0.90996 0.91490 0.88753 0.88353 0.89241 0.90047 0.89539 0.76291 0.90377 0.91702 0.97167 0.87266 0.93740 0.94932 0.95650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.90 37.16 0.37 -0.84 16 2 C -0.04 -0.37 6.38 -27.88 -0.18 -0.55 16 3 C 0.01 0.18 6.80 -34.63 -0.24 -0.06 16 4 O 0.09 1.22 11.06 18.65 0.21 1.43 16 5 N -0.36 -5.15 12.01 34.78 0.42 -4.74 16 6 C 0.06 0.84 7.59 -79.77 -0.61 0.24 16 7 C -0.08 -1.00 10.49 36.00 0.38 -0.63 16 8 C -0.24 -3.45 6.24 -102.89 -0.64 -4.09 16 9 C 0.60 9.53 7.60 -12.53 -0.10 9.43 16 10 O -0.53 -10.04 16.84 5.27 0.09 -9.95 16 11 N -0.70 -10.75 5.11 -53.11 -0.27 -11.03 16 12 C 0.13 2.23 3.24 -66.10 -0.21 2.02 16 13 H 0.09 1.48 7.70 -51.93 -0.40 1.08 16 14 C -0.15 -2.61 6.65 -24.46 -0.16 -2.78 16 15 C 0.15 3.40 5.88 -2.41 -0.01 3.39 16 16 N -0.60 -14.93 3.39 -169.94 -0.58 -15.51 16 17 C -0.22 -6.05 10.27 -15.06 -0.15 -6.21 16 18 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 19 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -26.10 10.08 55.49 0.56 -25.54 16 21 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.13 2.69 6.98 -3.07 -0.02 2.67 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 0.80 8.11 -51.93 -0.42 0.38 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.40 5.78 8.60 -40.82 -0.35 5.43 16 35 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.11 2.82 5.86 -51.93 -0.30 2.52 16 39 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 41 H 0.03 0.56 8.04 -51.93 -0.42 0.15 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -31.64 346.90 -7.14 -38.77 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -6.09 Total: 2.38 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -1.67 Total: 2.20 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: 0.13 Total: -56.81 kcal Atomic # 8 Polarization: -8.82 SS G_CDS: 0.30 Total: -8.52 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.64 -7.14 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016229854.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.433 kcal (2) G-P(sol) polarization free energy of solvation -31.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds