Wall clock time and date at job start Fri Apr 10 2020 20:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30183 * 126.80497 * 2 1 4 4 O 1.20916 * 111.60717 * 180.25455 * 3 2 1 5 5 C 1.34036 * 111.56772 * 359.73844 * 4 3 2 6 6 C 1.50700 * 126.77687 * 180.02562 * 5 4 3 7 7 C 1.35454 * 106.44827 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00737 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47263 * 89.99814 * 8 7 5 10 10 O 1.21277 * 119.99734 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99679 * 179.97438 * 9 8 7 12 12 C 1.47018 * 125.65071 * 0.02562 * 11 9 8 13 13 C 1.54325 * 107.26791 * 178.89555 * 12 11 9 14 14 C 1.55156 * 102.94629 * 337.80770 * 13 12 11 15 15 H 1.09003 * 111.00111 * 277.39436 * 14 13 12 16 16 N 1.46490 * 111.00784 * 153.57711 * 14 13 12 17 17 C 1.36935 * 120.00121 * 86.45040 * 16 14 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.47428 * 125.64274 * 179.97438 * 11 9 8 26 26 H 1.08998 * 109.47670 * 270.16685 * 1 2 3 27 27 H 1.08996 * 109.47138 * 30.16769 * 1 2 3 28 28 H 1.09005 * 109.46897 * 150.16381 * 1 2 3 29 29 H 1.09003 * 109.46981 * 269.99919 * 6 5 4 30 30 H 1.08996 * 109.47609 * 30.00341 * 6 5 4 31 31 H 1.08996 * 109.47443 * 150.00508 * 6 5 4 32 32 H 1.09002 * 109.47027 * 329.99371 * 8 7 5 33 33 H 1.08997 * 109.46757 * 209.99645 * 8 7 5 34 34 H 1.09001 * 109.88396 * 59.48131 * 12 11 9 35 35 H 1.09001 * 109.88202 * 298.30934 * 12 11 9 36 36 H 1.09006 * 110.71936 * 219.44530 * 13 12 11 37 37 H 1.08998 * 110.72187 * 96.17134 * 13 12 11 38 38 H 0.97000 * 120.00577 * 266.45640 * 16 14 13 39 39 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 40 40 H 1.09009 * 110.36455 * 85.34120 * 25 11 9 41 41 H 1.09000 * 110.36736 * 323.01733 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6025 -0.6067 -0.0034 6 6 4.9022 -1.3694 -0.0077 7 6 2.3539 -1.1320 0.0029 8 6 1.9591 -2.5864 0.0065 9 6 1.8339 -3.0694 1.4285 10 8 2.0450 -2.3078 2.3484 11 7 1.4873 -4.3477 1.6779 12 6 1.2048 -5.3726 0.6624 13 6 0.8810 -6.6826 1.4114 14 6 1.5516 -6.4674 2.7939 15 1 2.6145 -6.7057 2.7539 16 7 0.8789 -7.2525 3.8317 17 6 1.2477 -8.5524 4.0537 18 1 2.0347 -8.9988 3.4640 19 6 0.6100 -9.2967 5.0368 20 7 -0.3496 -8.7529 5.7552 21 14 1.1136 -11.0698 5.3401 22 1 0.2859 -11.6392 6.4337 23 1 0.9079 -11.8616 4.1007 24 1 2.5465 -11.1182 5.7265 25 6 1.3299 -4.9501 3.0142 26 1 -0.3634 0.0030 1.0276 27 1 -0.3633 0.8884 -0.5164 28 1 -0.3633 -0.8915 -0.5113 29 1 5.2111 -1.5551 -1.0364 30 1 5.6682 -0.7850 0.5019 31 1 4.7673 -2.3201 0.5082 32 1 2.7205 -3.1709 -0.5101 33 1 1.0027 -2.7044 -0.5028 34 1 2.0786 -5.5154 0.0267 35 1 0.3495 -5.0700 0.0582 36 1 1.3202 -7.5385 0.8988 37 1 -0.1962 -6.8082 1.5206 38 1 0.1723 -6.8517 4.3616 39 1 -0.6108 -7.8321 5.5979 40 1 0.3264 -4.7652 3.3978 41 1 2.0783 -4.5529 3.7000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019761718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:04:15 Heat of formation + Delta-G solvation = 34.410354 kcal Electronic energy + Delta-G solvation = -23348.053784 eV Core-core repulsion = 19845.538147 eV Total energy + Delta-G solvation = -3502.515638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -45.03539 -39.96146 -37.56029 -35.39638 -34.49056 -33.81313 -31.79328 -30.18791 -29.55513 -28.82085 -27.88907 -26.89418 -23.69697 -23.06437 -21.95068 -20.45271 -20.26767 -19.15150 -17.86621 -17.55410 -17.09951 -16.97198 -16.10142 -15.44477 -14.91758 -14.61190 -14.27664 -13.91426 -13.69525 -13.64910 -13.40551 -13.33400 -13.18934 -12.89140 -12.73276 -12.63350 -12.44548 -12.35285 -12.02720 -11.76156 -11.14251 -11.08554 -10.78544 -10.71222 -10.34468 -10.12340 -10.04452 -9.81065 -9.30775 -9.22909 -9.02063 -8.56246 -7.18105 -6.20119 -3.22575 1.31478 2.02056 2.61643 2.92539 3.10303 3.46659 3.49688 3.67515 4.00877 4.26747 4.48912 4.55094 4.58726 4.70358 4.89153 5.00324 5.09436 5.12451 5.16590 5.18936 5.25833 5.32323 5.39826 5.44268 5.51216 5.52358 5.55004 5.63583 5.74693 5.81938 5.90927 5.98304 6.07800 6.21994 6.39629 6.46619 6.75627 7.57444 7.70015 8.16004 8.17378 8.64924 9.08884 9.95516 10.08655 11.27693 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034508 B = 0.002897 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.204423 B = 9664.299098 C = 9876.549425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.034 3.966 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.017 4.017 6 C -0.075 4.075 7 C -0.184 4.184 8 C -0.057 4.057 9 C 0.526 3.474 10 O -0.536 6.536 11 N -0.613 5.613 12 C 0.100 3.900 13 C -0.154 4.154 14 C 0.177 3.823 15 H 0.064 0.936 16 N -0.727 5.727 17 C -0.337 4.337 18 H 0.067 0.933 19 C -0.041 4.041 20 N -0.940 5.940 21 Si 1.081 2.919 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.099 3.901 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.369 0.631 39 H 0.256 0.744 40 H 0.066 0.934 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.926 12.765 -16.829 21.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.125 4.125 3 N -0.076 5.076 4 O 0.032 5.968 5 C -0.080 4.080 6 C -0.132 4.132 7 C -0.188 4.188 8 C -0.097 4.097 9 C 0.313 3.687 10 O -0.413 6.413 11 N -0.348 5.348 12 C -0.024 4.024 13 C -0.195 4.195 14 C 0.065 3.935 15 H 0.082 0.918 16 N -0.368 5.368 17 C -0.468 4.468 18 H 0.085 0.915 19 C -0.239 4.239 20 N -0.584 5.584 21 Si 0.911 3.089 22 H -0.210 1.210 23 H -0.222 1.222 24 H -0.222 1.222 25 C -0.024 4.024 26 H 0.100 0.900 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.124 0.876 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.203 0.797 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.718 13.093 -15.503 21.083 hybrid contribution -0.079 0.623 -0.881 1.082 sum 5.639 13.717 -16.384 22.099 Atomic orbital electron populations 1.20166 0.86108 1.03435 1.03663 1.23344 0.98813 0.88385 1.01948 1.73802 0.89231 1.23838 1.20746 1.84772 1.21679 1.22360 1.68010 1.24170 0.98069 0.83844 1.01953 1.20349 0.90165 0.98853 1.03825 1.20232 0.91934 0.95964 1.10661 1.19850 1.04395 0.90300 0.95154 1.20082 0.77106 0.80447 0.91017 1.90727 1.50155 1.53918 1.46518 1.48458 1.67981 1.09381 1.08986 1.22139 0.99997 0.88957 0.91264 1.23395 1.02574 0.94530 0.99045 1.21226 0.96207 0.87744 0.88295 0.91792 1.42262 1.42974 1.11450 1.40141 1.20000 1.19052 0.88649 1.19071 0.91532 1.25826 0.97233 1.05808 0.95047 1.70893 1.30421 1.15163 1.41938 0.83236 0.75263 0.74368 0.76030 1.20975 1.22163 1.22152 1.22527 1.01714 0.94398 0.83772 0.89958 0.90522 0.90231 0.89336 0.89617 0.89159 0.87632 0.87648 0.91675 0.91867 0.90558 0.90664 0.79686 0.93285 0.91570 0.90570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.39 36.00 0.37 -0.37 16 2 C 0.03 0.44 7.33 -82.10 -0.60 -0.17 16 3 N -0.37 -5.22 12.07 33.42 0.40 -4.82 16 4 O 0.10 1.24 11.20 17.19 0.19 1.44 16 5 C -0.02 -0.19 7.49 -35.30 -0.26 -0.45 16 6 C -0.07 -0.54 10.25 36.01 0.37 -0.18 16 7 C -0.18 -2.17 4.82 -104.42 -0.50 -2.68 16 8 C -0.06 -0.56 5.14 -29.03 -0.15 -0.71 16 9 C 0.53 7.45 7.84 -10.99 -0.09 7.36 16 10 O -0.54 -9.88 16.29 5.56 0.09 -9.79 16 11 N -0.61 -8.64 3.33 -170.52 -0.57 -9.20 16 12 C 0.10 1.15 6.49 -3.07 -0.02 1.13 16 13 C -0.15 -2.34 6.65 -24.90 -0.17 -2.51 16 14 C 0.18 3.28 3.69 -65.79 -0.24 3.04 16 15 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 16 N -0.73 -17.21 5.28 -51.36 -0.27 -17.49 16 17 C -0.34 -9.02 9.98 -15.06 -0.15 -9.17 16 18 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 19 C -0.04 -1.15 5.50 -17.43 -0.10 -1.25 16 20 N -0.94 -28.27 13.70 55.49 0.76 -27.51 16 21 Si 1.08 24.99 29.92 -169.99 -5.09 19.90 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.10 1.68 6.53 -2.53 -0.02 1.66 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.61 7.65 -51.93 -0.40 0.22 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 32 H 0.11 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.11 0.83 7.65 -51.93 -0.40 0.43 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.37 9.11 6.54 -40.82 -0.27 8.84 16 39 H 0.26 7.57 6.77 -40.82 -0.28 7.29 16 40 H 0.07 1.17 8.00 -51.92 -0.42 0.75 16 41 H 0.08 1.38 8.04 -51.93 -0.42 0.96 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -34.27 347.06 -6.82 -41.09 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.02 Total: 5.43 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.55 Total: -4.28 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 0.33 Total: -59.02 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.28 Total: -8.35 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.09 Total: 19.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.27 -6.82 -41.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019761718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.501 kcal (2) G-P(sol) polarization free energy of solvation -34.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds