Wall clock time and date at job start Fri Apr 10 2020 20:04:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30183 * 126.80497 * 2 1 4 4 O 1.20916 * 111.60717 * 180.25455 * 3 2 1 5 5 C 1.34036 * 111.56772 * 359.73844 * 4 3 2 6 6 C 1.50700 * 126.77687 * 180.02562 * 5 4 3 7 7 C 1.35454 * 106.44827 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00737 * 179.97438 * 7 5 4 9 9 C 1.50700 * 109.47263 * 89.99814 * 8 7 5 10 10 O 1.21277 * 119.99734 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99679 * 179.97438 * 9 8 7 12 12 C 1.47018 * 125.65071 * 0.02562 * 11 9 8 13 13 C 1.54325 * 107.26791 * 178.89555 * 12 11 9 14 14 C 1.55156 * 102.94629 * 337.80770 * 13 12 11 15 15 H 1.09003 * 111.00111 * 277.39436 * 14 13 12 16 16 N 1.46490 * 111.00784 * 153.57711 * 14 13 12 17 17 C 1.36935 * 120.00121 * 86.45040 * 16 14 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.47428 * 125.64274 * 179.97438 * 11 9 8 26 26 H 1.08998 * 109.47670 * 270.16685 * 1 2 3 27 27 H 1.08996 * 109.47138 * 30.16769 * 1 2 3 28 28 H 1.09005 * 109.46897 * 150.16381 * 1 2 3 29 29 H 1.09003 * 109.46981 * 269.99919 * 6 5 4 30 30 H 1.08996 * 109.47609 * 30.00341 * 6 5 4 31 31 H 1.08996 * 109.47443 * 150.00508 * 6 5 4 32 32 H 1.09002 * 109.47027 * 329.99371 * 8 7 5 33 33 H 1.08997 * 109.46757 * 209.99645 * 8 7 5 34 34 H 1.09001 * 109.88396 * 59.48131 * 12 11 9 35 35 H 1.09001 * 109.88202 * 298.30934 * 12 11 9 36 36 H 1.09006 * 110.71936 * 219.44530 * 13 12 11 37 37 H 1.08998 * 110.72187 * 96.17134 * 13 12 11 38 38 H 0.97000 * 120.00577 * 266.45640 * 16 14 13 39 39 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 40 40 H 1.09009 * 110.36455 * 85.34120 * 25 11 9 41 41 H 1.09000 * 110.36736 * 323.01733 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6025 -0.6067 -0.0034 6 6 4.9022 -1.3694 -0.0077 7 6 2.3539 -1.1320 0.0029 8 6 1.9591 -2.5864 0.0065 9 6 1.8339 -3.0694 1.4285 10 8 2.0450 -2.3078 2.3484 11 7 1.4873 -4.3477 1.6779 12 6 1.2048 -5.3726 0.6624 13 6 0.8810 -6.6826 1.4114 14 6 1.5516 -6.4674 2.7939 15 1 2.6145 -6.7057 2.7539 16 7 0.8789 -7.2525 3.8317 17 6 1.2477 -8.5524 4.0537 18 1 2.0347 -8.9988 3.4640 19 6 0.6100 -9.2967 5.0368 20 7 -0.3496 -8.7529 5.7552 21 14 1.1136 -11.0698 5.3401 22 1 0.2859 -11.6392 6.4337 23 1 0.9079 -11.8616 4.1007 24 1 2.5465 -11.1182 5.7265 25 6 1.3299 -4.9501 3.0142 26 1 -0.3634 0.0030 1.0276 27 1 -0.3633 0.8884 -0.5164 28 1 -0.3633 -0.8915 -0.5113 29 1 5.2111 -1.5551 -1.0364 30 1 5.6682 -0.7850 0.5019 31 1 4.7673 -2.3201 0.5082 32 1 2.7205 -3.1709 -0.5101 33 1 1.0027 -2.7044 -0.5028 34 1 2.0786 -5.5154 0.0267 35 1 0.3495 -5.0700 0.0582 36 1 1.3202 -7.5385 0.8988 37 1 -0.1962 -6.8082 1.5206 38 1 0.1723 -6.8517 4.3616 39 1 -0.6108 -7.8321 5.5979 40 1 0.3264 -4.7652 3.3978 41 1 2.0783 -4.5529 3.7000 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019761718.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:04:14 Heat of formation + Delta-G solvation = 11.395888 kcal Electronic energy + Delta-G solvation = -23349.051766 eV Core-core repulsion = 19845.538147 eV Total energy + Delta-G solvation = -3503.513620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.93345 -41.12973 -38.86511 -36.33448 -36.21621 -34.62479 -33.40446 -31.29811 -30.78443 -29.65533 -29.09921 -27.88516 -25.54325 -24.36930 -22.91188 -21.79131 -21.21429 -20.23911 -19.46144 -18.81170 -18.09831 -17.99273 -17.32872 -16.82769 -16.26339 -15.90563 -15.51996 -15.21677 -14.87081 -14.59829 -14.41451 -14.33540 -13.98662 -13.95400 -13.71637 -13.62280 -13.43727 -13.24657 -13.16841 -12.91880 -12.74789 -12.45817 -12.37575 -11.94011 -11.87639 -11.71288 -11.29832 -11.17611 -10.92654 -10.80424 -10.10428 -9.72584 -9.15721 -8.38726 -5.34966 0.46323 1.11122 1.55356 1.61141 1.70772 1.86578 1.95356 2.20012 2.73321 3.19503 3.36723 3.49034 3.54431 3.61538 3.74720 3.84719 3.94291 4.06667 4.16011 4.30527 4.32266 4.41243 4.44258 4.55162 4.60020 4.64674 4.67015 4.71789 4.77948 4.81761 4.85912 4.95045 5.10307 5.14661 5.21291 5.25048 5.37788 5.61407 6.47894 6.50200 7.05401 7.08766 7.28021 7.95266 8.07270 9.12768 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.034508 B = 0.002897 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.204423 B = 9664.299098 C = 9876.549425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.021 3.979 3 N -0.403 5.403 4 O 0.079 5.921 5 C -0.016 4.016 6 C -0.074 4.074 7 C -0.202 4.202 8 C -0.045 4.045 9 C 0.525 3.475 10 O -0.587 6.587 11 N -0.611 5.611 12 C 0.106 3.894 13 C -0.145 4.145 14 C 0.169 3.831 15 H 0.060 0.940 16 N -0.743 5.743 17 C -0.328 4.328 18 H 0.074 0.926 19 C -0.104 4.104 20 N -0.977 5.977 21 Si 1.128 2.872 22 H -0.297 1.297 23 H -0.273 1.273 24 H -0.278 1.278 25 C 0.109 3.891 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.143 0.857 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.360 0.640 39 H 0.244 0.756 40 H 0.053 0.947 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.966 11.850 -19.882 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.137 4.137 3 N -0.113 5.113 4 O 0.018 5.982 5 C -0.080 4.080 6 C -0.131 4.131 7 C -0.206 4.206 8 C -0.084 4.084 9 C 0.315 3.685 10 O -0.468 6.468 11 N -0.345 5.345 12 C -0.016 4.016 13 C -0.185 4.185 14 C 0.059 3.941 15 H 0.078 0.922 16 N -0.385 5.385 17 C -0.460 4.460 18 H 0.092 0.908 19 C -0.295 4.295 20 N -0.625 5.625 21 Si 0.952 3.048 22 H -0.224 1.224 23 H -0.199 1.199 24 H -0.205 1.205 25 C -0.016 4.016 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.123 0.877 29 H 0.138 0.862 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.160 0.840 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.078 0.922 38 H 0.192 0.808 39 H 0.054 0.946 40 H 0.071 0.929 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.802 12.196 -18.643 23.293 hybrid contribution -0.341 0.985 0.049 1.043 sum 6.462 13.180 -18.593 23.689 Atomic orbital electron populations 1.20284 0.84561 1.05152 1.03439 1.23918 1.00109 0.88640 1.01071 1.73786 0.89834 1.25072 1.22597 1.84727 1.21454 1.23555 1.68435 1.24932 0.99626 0.83274 1.00168 1.20558 0.88465 0.98235 1.05891 1.20538 0.91945 0.96765 1.11397 1.19941 1.07171 0.89223 0.92074 1.20890 0.75590 0.79577 0.92417 1.90716 1.52339 1.55168 1.48543 1.48503 1.67872 1.10080 1.08043 1.22306 1.03080 0.85856 0.90353 1.23187 1.01148 0.97330 0.96869 1.21407 0.95764 0.87974 0.88966 0.92222 1.42449 1.43232 1.11179 1.41607 1.20354 1.17966 0.89729 1.17906 0.90838 1.27209 0.97347 1.09452 0.95524 1.71002 1.32695 1.14833 1.43964 0.82631 0.75421 0.70454 0.76267 1.22377 1.19890 1.20460 1.22158 1.00286 0.93583 0.85553 0.90992 0.89695 0.87723 0.86228 0.88985 0.89039 0.83970 0.84709 0.87867 0.88602 0.89653 0.92236 0.80834 0.94595 0.92909 0.92559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.40 10.39 71.23 0.74 -0.66 16 2 C 0.02 0.52 7.33 43.58 0.32 0.84 16 3 N -0.40 -11.36 12.07 -49.55 -0.60 -11.96 16 4 O 0.08 2.03 11.20 71.68 0.80 2.84 16 5 C -0.02 -0.34 7.49 25.04 0.19 -0.15 16 6 C -0.07 -0.88 10.25 71.24 0.73 -0.15 16 7 C -0.20 -4.33 4.82 -19.73 -0.10 -4.42 16 8 C -0.04 -0.70 5.14 29.10 0.15 -0.55 16 9 C 0.52 13.62 7.84 87.66 0.69 14.31 16 10 O -0.59 -21.42 16.29 -3.02 -0.05 -21.47 16 11 N -0.61 -15.67 3.33 -811.78 -2.70 -18.37 16 12 C 0.11 1.95 6.49 86.73 0.56 2.52 16 13 C -0.14 -4.02 6.65 31.78 0.21 -3.81 16 14 C 0.17 6.14 3.69 46.39 0.17 6.31 16 15 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 16 N -0.74 -35.69 5.28 -316.39 -1.67 -37.36 16 17 C -0.33 -17.54 9.98 84.03 0.84 -16.70 16 18 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 19 C -0.10 -5.87 5.50 84.86 0.47 -5.40 16 20 N -0.98 -60.27 13.70 21.65 0.30 -59.97 16 21 Si 1.13 50.14 29.92 68.60 2.05 52.19 16 22 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 23 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 24 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 25 C 0.11 3.68 6.53 86.86 0.57 4.25 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.10 1.31 7.65 -2.38 -0.02 1.29 16 29 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.09 1.10 8.05 -2.39 -0.02 1.08 16 32 H 0.14 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.14 1.38 7.65 -2.39 -0.02 1.36 16 34 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.36 18.42 6.54 -92.71 -0.61 17.81 16 39 H 0.24 15.01 6.77 -92.71 -0.63 14.38 16 40 H 0.05 1.92 8.00 -2.38 -0.02 1.90 16 41 H 0.06 2.10 8.04 -2.39 -0.02 2.08 16 Total: -1.00 -78.24 347.06 4.25 -74.00 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.58 Total: 23.74 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: 5.54 Total: -3.63 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -4.67 Total: -127.66 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: 0.75 Total: -18.64 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.19 kcal Total: -78.24 4.25 -74.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019761718.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.391 kcal (2) G-P(sol) polarization free energy of solvation -78.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds