Wall clock time and date at job start Fri Apr 10 2020 20:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34257 * 126.52560 * 2 1 4 4 C 1.34057 * 108.22722 * 179.97438 * 3 2 1 5 5 N 1.29937 * 109.23806 * 359.72051 * 4 3 2 6 6 C 1.36070 * 108.48052 * 0.44282 * 5 4 3 7 7 C 1.47416 * 126.44738 * 179.82894 * 6 5 4 8 8 O 1.21614 * 119.99999 * 179.68815 * 7 6 5 9 9 N 1.34779 * 120.00128 * 359.68239 * 7 6 5 10 10 C 1.46502 * 119.99979 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46969 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.70543 * 60.23569 * 11 10 9 13 13 C 1.53629 * 109.65971 * 180.83039 * 11 10 9 14 14 C 1.53042 * 109.23756 * 174.54872 * 13 11 10 15 15 C 1.53042 * 109.53594 * 298.50611 * 14 13 11 16 16 C 1.53195 * 109.31238 * 61.36937 * 15 14 13 17 17 N 1.46919 * 108.77118 * 305.36425 * 16 15 14 18 18 C 1.36944 * 120.62903 * 233.58196 * 17 16 15 19 19 H 1.08004 * 119.99869 * 148.80184 * 18 17 16 20 20 C 1.38808 * 119.99927 * 329.08275 * 18 17 16 21 21 N 1.31625 * 120.00076 * 345.66728 * 20 18 17 22 22 Si 1.86801 * 120.00163 * 165.66274 * 20 18 17 23 23 H 1.48503 * 109.46714 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47278 * 120.00074 * 22 20 18 25 25 H 1.48499 * 109.47487 * 240.00329 * 22 20 18 26 26 H 1.08998 * 109.47263 * 270.03644 * 1 2 3 27 27 H 1.08998 * 109.46722 * 30.03405 * 1 2 3 28 28 H 1.08998 * 109.47167 * 150.02944 * 1 2 3 29 29 H 1.07994 * 125.37907 * 179.97438 * 4 3 2 30 30 H 0.97002 * 120.00012 * 0.02562 * 9 7 6 31 31 H 1.08999 * 109.47394 * 59.99754 * 10 9 7 32 32 H 1.09005 * 109.47078 * 300.00223 * 10 9 7 33 33 H 1.08993 * 109.63616 * 54.55554 * 13 11 10 34 34 H 1.09000 * 109.45253 * 294.42808 * 13 11 10 35 35 H 1.09006 * 109.45810 * 178.48822 * 14 13 11 36 36 H 1.09004 * 109.45156 * 58.52367 * 14 13 11 37 37 H 1.08993 * 109.50040 * 301.41599 * 15 14 13 38 38 H 1.09002 * 109.52284 * 181.33635 * 15 14 13 39 39 H 1.08995 * 109.58132 * 185.57529 * 16 15 14 40 40 H 1.09006 * 109.70032 * 65.21852 * 16 15 14 41 41 H 0.97003 * 119.99606 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5789 0.6580 0.0006 5 7 3.6002 -0.6412 0.0069 6 6 2.3169 -1.0937 0.0007 7 6 1.8853 -2.5032 0.0010 8 8 0.7002 -2.7763 0.0007 9 7 2.8040 -3.4894 0.0016 10 6 2.3750 -4.8902 0.0014 11 6 3.6049 -5.8002 0.0028 12 1 4.2025 -5.6091 0.8941 13 6 3.1601 -7.2705 -0.0184 14 6 4.3921 -8.1682 -0.1542 15 6 5.1055 -7.8622 -1.4731 16 6 5.5691 -6.4020 -1.4714 17 7 4.4122 -5.5390 -1.1967 18 6 4.0958 -4.5071 -2.0396 19 1 3.0654 -4.2082 -2.1642 20 6 5.0987 -3.8492 -2.7382 21 7 6.3580 -4.0131 -2.3924 22 14 4.6611 -2.7311 -4.1692 23 1 3.1877 -2.7179 -4.3544 24 1 5.1372 -1.3536 -3.8848 25 1 5.3104 -3.2336 -5.4066 26 1 -0.3634 0.0007 1.0276 27 1 -0.3633 0.8897 -0.5144 28 1 -0.3633 -0.8902 -0.5134 29 1 4.4490 1.2977 0.0003 30 1 3.7493 -3.2716 0.0021 31 1 1.7778 -5.0872 -0.8889 32 1 1.7767 -5.0871 0.8910 33 1 2.4923 -7.4390 -0.8632 34 1 2.6391 -7.5055 0.9097 35 1 4.0828 -9.2134 -0.1426 36 1 5.0710 -7.9811 0.6779 37 1 4.4194 -8.0251 -2.3042 38 1 5.9694 -8.5180 -1.5806 39 1 5.9892 -6.1511 -2.4453 40 1 6.3246 -6.2572 -0.6991 41 1 7.0588 -3.5530 -2.8804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024353081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:04:29 Heat of formation + Delta-G solvation = 3.524912 kcal Electronic energy + Delta-G solvation = -24619.589006 eV Core-core repulsion = 21115.734076 eV Total energy + Delta-G solvation = -3503.854931 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.19358 -39.06721 -37.62100 -34.59598 -34.15199 -33.00775 -32.18664 -30.72009 -29.85635 -27.44255 -25.92976 -24.81946 -23.22013 -22.10886 -21.62786 -20.56228 -19.91989 -19.09463 -17.82694 -16.69285 -16.41475 -15.71765 -15.55037 -15.30626 -14.45704 -14.24659 -13.99867 -13.75734 -13.57438 -13.33631 -13.07619 -12.95848 -12.78047 -12.39405 -12.31332 -11.98247 -11.76425 -11.19736 -11.05142 -10.90525 -10.73819 -10.50579 -10.46005 -10.25655 -10.10593 -9.95976 -9.64919 -9.45678 -9.28154 -8.75912 -8.51220 -8.14426 -6.59938 -5.78718 -3.24136 1.34284 2.38252 2.75177 3.35907 3.44463 3.47600 3.72267 3.86932 4.34740 4.49268 4.82896 5.19156 5.27552 5.33280 5.38668 5.51769 5.55384 5.61060 5.67293 5.71553 5.99101 5.99872 6.07710 6.12626 6.17163 6.25837 6.38013 6.41278 6.43791 6.61693 6.74061 6.76017 6.88706 7.00957 7.18362 7.41371 7.68335 7.69732 7.85070 8.32996 8.46136 8.84340 9.22004 9.83339 10.41121 11.28535 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.006189 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.063413 B = 4522.828938 C = 5648.775187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.025 3.975 3 O -0.206 6.206 4 C 0.164 3.836 5 N -0.445 5.445 6 C -0.062 4.062 7 C 0.591 3.409 8 O -0.562 6.562 9 N -0.672 5.672 10 C 0.134 3.866 11 C 0.159 3.841 12 H 0.032 0.968 13 C -0.126 4.126 14 C -0.107 4.107 15 C -0.144 4.144 16 C 0.174 3.826 17 N -0.587 5.587 18 C -0.251 4.251 19 H 0.068 0.932 20 C 0.015 3.985 21 N -0.896 5.896 22 Si 0.891 3.109 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.252 0.748 30 H 0.425 0.575 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.018 0.982 41 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.057 4.033 6.047 9.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.032 4.032 3 O -0.093 6.093 4 C -0.064 4.064 5 N -0.174 5.174 6 C -0.182 4.182 7 C 0.376 3.624 8 O -0.443 6.443 9 N -0.321 5.321 10 C 0.010 3.990 11 C 0.052 3.948 12 H 0.050 0.950 13 C -0.166 4.166 14 C -0.145 4.145 15 C -0.183 4.183 16 C 0.048 3.952 17 N -0.312 5.312 18 C -0.380 4.380 19 H 0.086 0.914 20 C -0.185 4.185 21 N -0.540 5.540 22 Si 0.721 3.279 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 H 0.106 0.894 27 H 0.094 0.906 28 H 0.130 0.870 29 H 0.268 0.732 30 H 0.264 0.736 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.102 0.898 40 H 0.036 0.964 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -6.159 3.528 5.978 9.279 hybrid contribution 0.149 1.236 -0.924 1.550 sum -6.010 4.763 5.054 9.184 Atomic orbital electron populations 1.20518 0.82881 1.05122 1.04231 1.23667 0.95059 0.83529 1.00909 1.84328 1.18687 1.36386 1.69928 1.28007 0.85055 0.91489 1.01888 1.70878 1.21751 1.09743 1.14990 1.21665 0.88618 0.95977 1.11974 1.16697 0.85544 0.82705 0.77443 1.90700 1.16502 1.83447 1.53665 1.45879 1.11210 1.05198 1.69844 1.21344 0.96858 0.79975 1.00828 1.20827 0.91109 0.91620 0.91246 0.95016 1.22009 0.97560 0.96552 1.00487 1.21361 0.97132 0.97522 0.98466 1.22191 0.99003 1.00550 0.96546 1.20746 0.88247 0.84870 1.01315 1.44079 1.31334 1.33108 1.22643 1.19164 0.92094 1.08447 1.18339 0.91417 1.25005 0.95527 0.97792 1.00159 1.70013 0.98738 1.44933 1.40283 0.86386 0.77928 0.80653 0.82889 1.20437 1.21674 1.21664 0.89442 0.90625 0.86978 0.73221 0.73589 0.91362 0.92452 0.92051 0.93078 0.93751 0.92892 0.92841 0.93577 0.89804 0.96382 0.93755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 9.88 36.01 0.36 -0.51 16 2 C 0.02 0.39 7.44 -35.08 -0.26 0.12 16 3 O -0.21 -2.93 10.73 6.49 0.07 -2.86 16 4 C 0.16 2.30 13.19 51.96 0.69 2.98 16 5 N -0.45 -8.24 11.06 -11.48 -0.13 -8.37 16 6 C -0.06 -1.17 6.99 -83.02 -0.58 -1.75 16 7 C 0.59 12.10 7.81 -12.52 -0.10 12.01 16 8 O -0.56 -11.80 14.80 5.27 0.08 -11.73 16 9 N -0.67 -14.02 3.84 -61.38 -0.24 -14.26 16 10 C 0.13 2.61 4.44 -4.04 -0.02 2.60 16 11 C 0.16 3.16 3.03 -67.37 -0.20 2.96 16 12 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 13 C -0.13 -2.15 5.40 -26.38 -0.14 -2.29 16 14 C -0.11 -1.78 5.88 -26.69 -0.16 -1.93 16 15 C -0.14 -2.70 6.08 -26.61 -0.16 -2.86 16 16 C 0.17 3.99 5.26 -3.71 -0.02 3.97 16 17 N -0.59 -13.78 2.96 -164.52 -0.49 -14.27 16 18 C -0.25 -6.49 6.95 -15.06 -0.10 -6.59 16 19 H 0.07 1.82 5.88 -52.48 -0.31 1.51 16 20 C 0.01 0.40 4.96 -17.43 -0.09 0.31 16 21 N -0.90 -24.99 11.24 55.49 0.62 -24.37 16 22 Si 0.89 22.05 29.58 -169.99 -5.03 17.02 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.11 1.56 6.48 -51.93 -0.34 1.22 16 29 H 0.25 2.16 8.06 -52.49 -0.42 1.73 16 30 H 0.42 9.65 7.11 -40.82 -0.29 9.36 16 31 H 0.07 1.43 7.43 -51.93 -0.39 1.05 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.08 2.17 6.20 -51.93 -0.32 1.85 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 331.87 15.07 5.00 5.00 Total: -1.00 -30.70 331.87 -6.75 -37.45 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.85 Total: 7.36 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -0.79 Total: 9.01 kcal Atomic # 7 Polarization: -61.03 SS G_CDS: -0.23 Total: -61.26 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.15 Total: -14.58 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.70 -6.75 -37.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024353081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.973 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds