Wall clock time and date at job start Fri Apr 10 2020 20:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34257 * 126.52560 * 2 1 4 4 C 1.34057 * 108.22722 * 179.97438 * 3 2 1 5 5 N 1.29937 * 109.23806 * 359.72051 * 4 3 2 6 6 C 1.36070 * 108.48052 * 0.44282 * 5 4 3 7 7 C 1.47416 * 126.44738 * 179.82894 * 6 5 4 8 8 O 1.21614 * 119.99999 * 179.68815 * 7 6 5 9 9 N 1.34779 * 120.00128 * 359.68239 * 7 6 5 10 10 C 1.46502 * 119.99979 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.46969 * 180.02562 * 10 9 7 12 12 H 1.08996 * 109.70543 * 60.23569 * 11 10 9 13 13 C 1.53629 * 109.65971 * 180.83039 * 11 10 9 14 14 C 1.53042 * 109.23756 * 174.54872 * 13 11 10 15 15 C 1.53042 * 109.53594 * 298.50611 * 14 13 11 16 16 C 1.53195 * 109.31238 * 61.36937 * 15 14 13 17 17 N 1.46919 * 108.77118 * 305.36425 * 16 15 14 18 18 C 1.36944 * 120.62903 * 233.58196 * 17 16 15 19 19 H 1.08004 * 119.99869 * 148.80184 * 18 17 16 20 20 C 1.38808 * 119.99927 * 329.08275 * 18 17 16 21 21 N 1.31625 * 120.00076 * 345.66728 * 20 18 17 22 22 Si 1.86801 * 120.00163 * 165.66274 * 20 18 17 23 23 H 1.48503 * 109.46714 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47278 * 120.00074 * 22 20 18 25 25 H 1.48499 * 109.47487 * 240.00329 * 22 20 18 26 26 H 1.08998 * 109.47263 * 270.03644 * 1 2 3 27 27 H 1.08998 * 109.46722 * 30.03405 * 1 2 3 28 28 H 1.08998 * 109.47167 * 150.02944 * 1 2 3 29 29 H 1.07994 * 125.37907 * 179.97438 * 4 3 2 30 30 H 0.97002 * 120.00012 * 0.02562 * 9 7 6 31 31 H 1.08999 * 109.47394 * 59.99754 * 10 9 7 32 32 H 1.09005 * 109.47078 * 300.00223 * 10 9 7 33 33 H 1.08993 * 109.63616 * 54.55554 * 13 11 10 34 34 H 1.09000 * 109.45253 * 294.42808 * 13 11 10 35 35 H 1.09006 * 109.45810 * 178.48822 * 14 13 11 36 36 H 1.09004 * 109.45156 * 58.52367 * 14 13 11 37 37 H 1.08993 * 109.50040 * 301.41599 * 15 14 13 38 38 H 1.09002 * 109.52284 * 181.33635 * 15 14 13 39 39 H 1.08995 * 109.58132 * 185.57529 * 16 15 14 40 40 H 1.09006 * 109.70032 * 65.21852 * 16 15 14 41 41 H 0.97003 * 119.99606 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5789 0.6580 0.0006 5 7 3.6002 -0.6412 0.0069 6 6 2.3169 -1.0937 0.0007 7 6 1.8853 -2.5032 0.0010 8 8 0.7002 -2.7763 0.0007 9 7 2.8040 -3.4894 0.0016 10 6 2.3750 -4.8902 0.0014 11 6 3.6049 -5.8002 0.0028 12 1 4.2025 -5.6091 0.8941 13 6 3.1601 -7.2705 -0.0184 14 6 4.3921 -8.1682 -0.1542 15 6 5.1055 -7.8622 -1.4731 16 6 5.5691 -6.4020 -1.4714 17 7 4.4122 -5.5390 -1.1967 18 6 4.0958 -4.5071 -2.0396 19 1 3.0654 -4.2082 -2.1642 20 6 5.0987 -3.8492 -2.7382 21 7 6.3580 -4.0131 -2.3924 22 14 4.6611 -2.7311 -4.1692 23 1 3.1877 -2.7179 -4.3544 24 1 5.1372 -1.3536 -3.8848 25 1 5.3104 -3.2336 -5.4066 26 1 -0.3634 0.0007 1.0276 27 1 -0.3633 0.8897 -0.5144 28 1 -0.3633 -0.8902 -0.5134 29 1 4.4490 1.2977 0.0003 30 1 3.7493 -3.2716 0.0021 31 1 1.7778 -5.0872 -0.8889 32 1 1.7767 -5.0871 0.8910 33 1 2.4923 -7.4390 -0.8632 34 1 2.6391 -7.5055 0.9097 35 1 4.0828 -9.2134 -0.1426 36 1 5.0710 -7.9811 0.6779 37 1 4.4194 -8.0251 -2.3042 38 1 5.9694 -8.5180 -1.5806 39 1 5.9892 -6.1511 -2.4453 40 1 6.3246 -6.2572 -0.6991 41 1 7.0588 -3.5530 -2.8804 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024353081.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:04:28 Heat of formation + Delta-G solvation = -18.522718 kcal Electronic energy + Delta-G solvation = -24620.545063 eV Core-core repulsion = 21115.734076 eV Total energy + Delta-G solvation = -3504.810988 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.39277 -40.65175 -39.25054 -35.91941 -35.65383 -34.88439 -33.33617 -32.34809 -31.66156 -28.70775 -27.55612 -26.49853 -24.59257 -23.79402 -22.90622 -22.09683 -21.38787 -20.70265 -19.27627 -18.17968 -17.89865 -17.33089 -17.13021 -16.74924 -16.09942 -15.71769 -15.61899 -15.32826 -15.04434 -14.78929 -14.58725 -14.32683 -14.06763 -13.93017 -13.60193 -13.45925 -13.33466 -12.87629 -12.83830 -12.58180 -12.37170 -12.31696 -12.04803 -11.81697 -11.72159 -11.52497 -11.23834 -11.09353 -10.91037 -10.52131 -10.07441 -9.71834 -8.54394 -7.83246 -5.28667 0.09508 1.11830 1.35132 1.39499 1.46125 1.61909 2.25583 2.40178 2.48566 3.20211 3.33464 3.58741 3.67469 3.89139 4.00205 4.22921 4.25460 4.27379 4.42815 4.46050 4.55419 4.60409 4.64760 4.73304 4.87023 4.89933 5.00444 5.11978 5.14038 5.20170 5.23072 5.29412 5.38645 5.47310 5.59315 5.63549 5.75376 5.84699 6.42463 6.45735 6.74156 7.20346 7.23250 7.89294 8.42068 9.21569 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.006189 C = 0.004956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.063413 B = 4522.828938 C = 5648.775187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.040 3.960 3 O -0.197 6.197 4 C 0.186 3.814 5 N -0.497 5.497 6 C -0.108 4.108 7 C 0.587 3.413 8 O -0.575 6.575 9 N -0.681 5.681 10 C 0.138 3.862 11 C 0.157 3.843 12 H 0.029 0.971 13 C -0.119 4.119 14 C -0.102 4.102 15 C -0.134 4.134 16 C 0.178 3.822 17 N -0.600 5.600 18 C -0.232 4.232 19 H 0.057 0.943 20 C -0.028 4.028 21 N -0.921 5.921 22 Si 0.935 3.065 23 H -0.284 1.284 24 H -0.293 1.293 25 H -0.290 1.290 26 H 0.108 0.892 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.300 0.700 30 H 0.414 0.586 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.048 0.952 40 H -0.001 1.001 41 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 4.225 6.974 10.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.017 4.017 3 O -0.084 6.084 4 C -0.043 4.043 5 N -0.225 5.225 6 C -0.226 4.226 7 C 0.373 3.627 8 O -0.457 6.457 9 N -0.329 5.329 10 C 0.015 3.985 11 C 0.051 3.949 12 H 0.046 0.954 13 C -0.159 4.159 14 C -0.140 4.140 15 C -0.173 4.173 16 C 0.053 3.947 17 N -0.325 5.325 18 C -0.363 4.363 19 H 0.074 0.926 20 C -0.225 4.225 21 N -0.567 5.567 22 Si 0.766 3.234 23 H -0.210 1.210 24 H -0.220 1.220 25 H -0.217 1.217 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.112 0.888 29 H 0.315 0.685 30 H 0.251 0.749 31 H 0.069 0.931 32 H 0.097 0.903 33 H 0.075 0.925 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.067 0.933 40 H 0.017 0.983 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -7.306 3.690 6.913 10.714 hybrid contribution 0.467 1.242 -1.159 1.762 sum -6.839 4.932 5.754 10.208 Atomic orbital electron populations 1.20646 0.80593 1.05679 1.05665 1.24174 0.96284 0.82945 0.98297 1.84379 1.18750 1.35574 1.69655 1.29054 0.85945 0.90811 0.98482 1.70815 1.22143 1.12052 1.17521 1.21578 0.89732 0.95778 1.15524 1.17003 0.85326 0.83582 0.76756 1.90670 1.16731 1.83998 1.54326 1.45936 1.10660 1.05872 1.70424 1.21354 0.96656 0.79598 1.00923 1.21009 0.90562 0.93924 0.89407 0.95383 1.21951 0.97951 0.93982 1.02004 1.21350 0.96593 0.99210 0.96851 1.22039 0.99832 0.97473 0.97970 1.20576 0.87865 0.87647 0.98641 1.44267 1.31708 1.32771 1.23761 1.19128 0.91285 1.08088 1.17789 0.92584 1.25426 0.95662 0.99350 1.02062 1.70116 0.99123 1.46235 1.41263 0.85695 0.77060 0.79423 0.81227 1.20998 1.22031 1.21723 0.87402 0.87541 0.88809 0.68540 0.74867 0.93136 0.90261 0.92535 0.89814 0.90508 0.92564 0.93463 0.91696 0.93312 0.98305 0.94363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.57 9.88 71.24 0.70 -0.86 16 2 C 0.04 1.21 7.44 25.19 0.19 1.39 16 3 O -0.20 -5.12 10.73 0.31 0.00 -5.12 16 4 C 0.19 4.83 13.19 130.52 1.72 6.55 16 5 N -0.50 -18.29 11.06 -305.14 -3.37 -21.66 16 6 C -0.11 -4.05 6.99 40.41 0.28 -3.77 16 7 C 0.59 24.40 7.81 86.66 0.68 25.08 16 8 O -0.57 -24.32 14.80 -4.08 -0.06 -24.38 16 9 N -0.68 -29.02 3.84 -466.36 -1.79 -30.81 16 10 C 0.14 5.39 4.44 86.38 0.38 5.77 16 11 C 0.16 6.16 3.03 45.12 0.14 6.30 16 12 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 13 C -0.12 -3.77 5.40 30.82 0.17 -3.60 16 14 C -0.10 -3.10 5.88 30.62 0.18 -2.92 16 15 C -0.13 -4.86 6.08 30.67 0.19 -4.67 16 16 C 0.18 8.31 5.26 86.36 0.45 8.77 16 17 N -0.60 -28.54 2.96 -674.43 -2.00 -30.54 16 18 C -0.23 -12.29 6.95 84.03 0.58 -11.71 16 19 H 0.06 3.09 5.88 -2.91 -0.02 3.08 16 20 C -0.03 -1.57 4.96 84.86 0.42 -1.15 16 21 N -0.92 -53.04 11.24 21.65 0.24 -52.79 16 22 Si 0.94 46.41 29.58 68.60 2.03 48.44 16 23 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 25 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 26 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 27 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.09 2.53 6.48 -2.39 -0.02 2.51 16 29 H 0.30 4.13 8.06 -2.91 -0.02 4.11 16 30 H 0.41 19.47 7.11 -92.71 -0.66 18.81 16 31 H 0.05 2.14 7.43 -2.39 -0.02 2.12 16 32 H 0.08 2.71 8.14 -2.38 -0.02 2.70 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 37 H 0.05 1.76 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.05 2.61 6.20 -2.39 -0.01 2.59 16 40 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 41 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -68.92 331.87 1.52 -67.40 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.39 Total: 24.29 kcal Atomic # 6 Polarization: 19.10 SS G_CDS: 6.09 Total: 25.18 kcal Atomic # 7 Polarization: -128.89 SS G_CDS: -6.92 Total: -135.81 kcal Atomic # 8 Polarization: -29.44 SS G_CDS: -0.06 Total: -29.50 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Total: -68.92 1.52 -67.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024353081.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.873 kcal (2) G-P(sol) polarization free energy of solvation -68.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds