Wall clock time and date at job start Fri Apr 10 2020 20:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35312 * 128.04077 * 2 1 4 4 O 1.34013 * 106.67305 * 180.02562 * 3 2 1 5 5 N 1.20907 * 111.84100 * 359.70211 * 4 3 2 6 6 C 1.30983 * 111.44068 * 0.49260 * 5 4 3 7 7 C 1.48327 * 126.93664 * 179.79584 * 6 5 4 8 8 O 1.21500 * 119.99961 * 179.68261 * 7 6 5 9 9 N 1.34774 * 120.00528 * 359.68346 * 7 6 5 10 10 C 1.46494 * 120.00572 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47322 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.70698 * 60.12350 * 11 10 9 13 13 C 1.53625 * 109.66618 * 180.71639 * 11 10 9 14 14 C 1.53042 * 109.24468 * 174.54451 * 13 11 10 15 15 C 1.53043 * 109.53821 * 298.51350 * 14 13 11 16 16 C 1.53193 * 109.31285 * 61.36172 * 15 14 13 17 17 N 1.46923 * 108.77714 * 305.36672 * 16 15 14 18 18 C 1.36932 * 120.63094 * 233.58815 * 17 16 15 19 19 H 1.07999 * 120.00657 * 148.84640 * 18 17 16 20 20 C 1.38812 * 119.99585 * 329.12344 * 18 17 16 21 21 N 1.31622 * 120.00275 * 345.52463 * 20 18 17 22 22 Si 1.86808 * 120.00006 * 165.52779 * 20 18 17 23 23 H 1.48496 * 109.47235 * 89.99604 * 22 20 18 24 24 H 1.48499 * 109.47181 * 210.00019 * 22 20 18 25 25 H 1.48501 * 109.46486 * 329.99544 * 22 20 18 26 26 H 1.08996 * 109.46738 * 270.00080 * 1 2 3 27 27 H 1.09000 * 109.46818 * 29.99718 * 1 2 3 28 28 H 1.08998 * 109.47036 * 150.00114 * 1 2 3 29 29 H 1.08007 * 126.66415 * 359.97438 * 3 2 1 30 30 H 0.97009 * 119.99541 * 0.02562 * 9 7 6 31 31 H 1.08998 * 109.47181 * 59.99546 * 10 9 7 32 32 H 1.09005 * 109.47088 * 299.99565 * 10 9 7 33 33 H 1.09006 * 109.63520 * 54.55680 * 13 11 10 34 34 H 1.09003 * 109.46047 * 294.43281 * 13 11 10 35 35 H 1.09000 * 109.46199 * 178.49163 * 14 13 11 36 36 H 1.09001 * 109.44585 * 58.52897 * 14 13 11 37 37 H 1.08996 * 109.49336 * 301.41218 * 15 14 13 38 38 H 1.08998 * 109.52313 * 181.33160 * 15 14 13 39 39 H 1.08995 * 109.58728 * 185.57439 * 16 15 14 40 40 H 1.09006 * 109.70034 * 65.21970 * 16 15 14 41 41 H 0.96998 * 119.99952 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5774 -0.0006 5 7 3.5988 -0.6316 0.0049 6 6 2.3837 -1.1205 -0.0006 7 6 1.9993 -2.5531 -0.0008 8 8 0.8255 -2.8671 -0.0005 9 7 2.9518 -3.5065 -0.0014 10 6 2.5721 -4.9214 -0.0021 11 6 3.8331 -5.7879 -0.0020 12 1 4.4252 -5.5751 0.8882 13 6 3.4401 -7.2728 -0.0209 14 6 4.7025 -8.1271 -0.1580 15 6 5.4025 -7.7976 -1.4784 16 6 5.8146 -6.3222 -1.4790 17 7 4.6288 -5.4998 -1.2031 18 6 4.2750 -4.4806 -2.0464 19 1 3.2348 -4.2175 -2.1690 20 6 5.2531 -3.7894 -2.7482 21 7 6.5178 -3.9071 -2.4034 22 14 4.7742 -2.6919 -4.1820 23 1 4.5095 -1.3173 -3.6864 24 1 5.8821 -2.6570 -5.1703 25 1 3.5504 -3.2290 -4.8292 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.0559 2.1075 -0.0004 30 1 3.8889 -3.2558 -0.0012 31 1 1.9816 -5.1386 -0.8922 32 1 1.9817 -5.1397 0.8878 33 1 2.7771 -7.4655 -0.8644 34 1 2.9292 -7.5251 0.9084 35 1 4.4300 -9.1824 -0.1448 36 1 5.3757 -7.9155 0.6727 37 1 4.7210 -7.9853 -2.3081 38 1 6.2887 -8.4230 -1.5868 39 1 6.2241 -6.0576 -2.4538 40 1 6.5659 -6.1502 -0.7082 41 1 7.2012 -3.4238 -2.8935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001024750335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:04:53 Heat of formation + Delta-G solvation = 42.079105 kcal Electronic energy + Delta-G solvation = -24618.022972 eV Core-core repulsion = 21115.839876 eV Total energy + Delta-G solvation = -3502.183096 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.85608 -39.21628 -37.69220 -34.59631 -34.17644 -33.05796 -32.23248 -30.61849 -29.89552 -28.08179 -26.30616 -25.10222 -23.52170 -22.13813 -21.46782 -20.74492 -20.03343 -19.13767 -18.01983 -17.54465 -16.55109 -15.97422 -15.61346 -15.29360 -14.35210 -14.24423 -13.98603 -13.72674 -13.41574 -13.36767 -13.15138 -13.07175 -12.82874 -12.43368 -12.22929 -12.04481 -11.80124 -11.23492 -11.11464 -10.96322 -10.74874 -10.55919 -10.30827 -10.15442 -10.01724 -9.99548 -9.77643 -9.50512 -9.34334 -9.30714 -8.59902 -8.28742 -6.64885 -5.83669 -3.29429 1.46170 1.86239 3.27141 3.33773 3.41471 3.44005 3.52519 3.68298 4.29725 4.44777 4.85776 4.99974 5.22212 5.23573 5.33218 5.49745 5.60602 5.64585 5.67445 5.68678 5.76714 5.89588 5.95515 6.03163 6.12069 6.24687 6.34184 6.35571 6.39151 6.58160 6.70482 6.72883 6.84801 6.94684 7.06990 7.37887 7.64984 7.79232 8.04551 8.34998 8.41129 8.68653 9.16907 9.78370 10.36383 11.23374 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.006177 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.687830 B = 4532.044921 C = 5651.614827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.154 4.154 3 C -0.081 4.081 4 O 0.123 5.877 5 N -0.314 5.314 6 C -0.025 4.025 7 C 0.589 3.411 8 O -0.548 6.548 9 N -0.674 5.674 10 C 0.134 3.866 11 C 0.159 3.841 12 H 0.033 0.967 13 C -0.126 4.126 14 C -0.107 4.107 15 C -0.144 4.144 16 C 0.174 3.826 17 N -0.588 5.588 18 C -0.256 4.256 19 H 0.067 0.933 20 C 0.014 3.986 21 N -0.895 5.895 22 Si 0.890 3.110 23 H -0.286 1.286 24 H -0.288 1.288 25 H -0.280 1.280 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.219 0.781 30 H 0.422 0.578 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.018 0.982 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.021 4.226 6.013 10.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.159 4.159 3 C -0.161 4.161 4 O 0.046 5.954 5 N -0.013 5.013 6 C -0.184 4.184 7 C 0.372 3.628 8 O -0.426 6.426 9 N -0.325 5.325 10 C 0.010 3.990 11 C 0.052 3.948 12 H 0.050 0.950 13 C -0.166 4.166 14 C -0.145 4.145 15 C -0.183 4.183 16 C 0.048 3.952 17 N -0.312 5.312 18 C -0.385 4.385 19 H 0.085 0.915 20 C -0.186 4.186 21 N -0.538 5.538 22 Si 0.719 3.281 23 H -0.213 1.213 24 H -0.214 1.214 25 H -0.205 1.205 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.106 0.894 29 H 0.235 0.765 30 H 0.261 0.739 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.102 0.898 40 H 0.036 0.964 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.467 3.424 5.938 9.424 hybrid contribution -0.404 0.982 -0.928 1.410 sum -6.871 4.406 5.010 9.578 Atomic orbital electron populations 1.20172 0.86872 1.03655 1.02832 1.21339 0.98937 0.90308 1.05333 1.25712 0.82934 1.01089 1.06413 1.84814 1.29243 1.15596 1.65709 1.74323 1.21552 0.91075 1.14391 1.23586 0.89214 0.97545 1.08102 1.16844 0.85689 0.82382 0.77891 1.90699 1.17663 1.81800 1.52445 1.45953 1.10735 1.05768 1.69997 1.21377 0.97257 0.79315 1.01017 1.20833 0.90991 0.91734 0.91263 0.94985 1.22006 0.97540 0.96519 1.00528 1.21359 0.96993 0.97666 0.98465 1.22188 0.98988 1.00565 0.96545 1.20749 0.87920 0.85181 1.01329 1.44066 1.29366 1.35292 1.22463 1.19104 0.91891 1.08919 1.18607 0.91540 1.25029 0.95616 0.97763 1.00158 1.69994 0.99489 1.44075 1.40250 0.86487 0.77658 0.80986 0.82933 1.21311 1.21411 1.20521 0.90855 0.91414 0.89412 0.76475 0.73885 0.91170 0.92258 0.92017 0.93033 0.93691 0.92876 0.92819 0.93527 0.89801 0.96353 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.15 -2.27 6.34 -104.12 -0.66 -2.94 16 3 C -0.08 -0.97 12.24 29.69 0.36 -0.61 16 4 O 0.12 1.93 11.18 17.25 0.19 2.12 16 5 N -0.31 -6.00 11.84 33.29 0.39 -5.61 16 6 C -0.02 -0.46 7.19 -82.53 -0.59 -1.06 16 7 C 0.59 12.05 7.85 -12.11 -0.10 11.96 16 8 O -0.55 -11.67 15.34 5.37 0.08 -11.59 16 9 N -0.67 -13.98 3.85 -61.10 -0.23 -14.21 16 10 C 0.13 2.60 4.44 -4.05 -0.02 2.58 16 11 C 0.16 3.14 3.03 -67.37 -0.20 2.94 16 12 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 13 C -0.13 -2.13 5.40 -26.39 -0.14 -2.28 16 14 C -0.11 -1.77 5.88 -26.69 -0.16 -1.93 16 15 C -0.14 -2.69 6.08 -26.61 -0.16 -2.85 16 16 C 0.17 3.98 5.27 -3.71 -0.02 3.96 16 17 N -0.59 -13.76 2.97 -164.52 -0.49 -14.24 16 18 C -0.26 -6.60 6.96 -15.06 -0.10 -6.70 16 19 H 0.07 1.77 5.88 -52.49 -0.31 1.46 16 20 C 0.01 0.38 4.96 -17.43 -0.09 0.30 16 21 N -0.89 -25.01 11.25 55.49 0.62 -24.39 16 22 Si 0.89 22.01 29.58 -169.99 -5.03 16.98 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 1.26 6.89 -51.93 -0.36 0.90 16 29 H 0.22 1.40 8.06 -52.48 -0.42 0.98 16 30 H 0.42 9.50 7.15 -40.82 -0.29 9.21 16 31 H 0.07 1.46 7.42 -51.93 -0.39 1.07 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.08 2.17 6.20 -51.93 -0.32 1.85 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 332.41 15.07 5.01 5.01 Total: -1.00 -30.17 332.41 -6.84 -37.01 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -5.87 Total: 6.13 kcal Atomic # 6 Polarization: 4.31 SS G_CDS: -1.52 Total: 2.79 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: 0.30 Total: -58.45 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.28 Total: -9.47 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.17 -6.84 -37.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024750335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.088 kcal (2) G-P(sol) polarization free energy of solvation -30.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds