Wall clock time and date at job start Fri Apr 10 2020 20:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35312 * 128.04077 * 2 1 4 4 O 1.34013 * 106.67305 * 180.02562 * 3 2 1 5 5 N 1.20907 * 111.84100 * 359.70211 * 4 3 2 6 6 C 1.30983 * 111.44068 * 0.49260 * 5 4 3 7 7 C 1.48327 * 126.93664 * 179.79584 * 6 5 4 8 8 O 1.21500 * 119.99961 * 179.68261 * 7 6 5 9 9 N 1.34774 * 120.00528 * 359.68346 * 7 6 5 10 10 C 1.46494 * 120.00572 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47322 * 180.02562 * 10 9 7 12 12 H 1.09003 * 109.70698 * 60.12350 * 11 10 9 13 13 C 1.53625 * 109.66618 * 180.71639 * 11 10 9 14 14 C 1.53042 * 109.24468 * 174.54451 * 13 11 10 15 15 C 1.53043 * 109.53821 * 298.51350 * 14 13 11 16 16 C 1.53193 * 109.31285 * 61.36172 * 15 14 13 17 17 N 1.46923 * 108.77714 * 305.36672 * 16 15 14 18 18 C 1.36932 * 120.63094 * 233.58815 * 17 16 15 19 19 H 1.07999 * 120.00657 * 148.84640 * 18 17 16 20 20 C 1.38812 * 119.99585 * 329.12344 * 18 17 16 21 21 N 1.31622 * 120.00275 * 345.52463 * 20 18 17 22 22 Si 1.86808 * 120.00006 * 165.52779 * 20 18 17 23 23 H 1.48496 * 109.47235 * 89.99604 * 22 20 18 24 24 H 1.48499 * 109.47181 * 210.00019 * 22 20 18 25 25 H 1.48501 * 109.46486 * 329.99544 * 22 20 18 26 26 H 1.08996 * 109.46738 * 270.00080 * 1 2 3 27 27 H 1.09000 * 109.46818 * 29.99718 * 1 2 3 28 28 H 1.08998 * 109.47036 * 150.00114 * 1 2 3 29 29 H 1.08007 * 126.66415 * 359.97438 * 3 2 1 30 30 H 0.97009 * 119.99541 * 0.02562 * 9 7 6 31 31 H 1.08998 * 109.47181 * 59.99546 * 10 9 7 32 32 H 1.09005 * 109.47088 * 299.99565 * 10 9 7 33 33 H 1.09006 * 109.63520 * 54.55680 * 13 11 10 34 34 H 1.09003 * 109.46047 * 294.43281 * 13 11 10 35 35 H 1.09000 * 109.46199 * 178.49163 * 14 13 11 36 36 H 1.09001 * 109.44585 * 58.52897 * 14 13 11 37 37 H 1.08996 * 109.49336 * 301.41218 * 15 14 13 38 38 H 1.08998 * 109.52313 * 181.33160 * 15 14 13 39 39 H 1.08995 * 109.58728 * 185.57439 * 16 15 14 40 40 H 1.09006 * 109.70034 * 65.21970 * 16 15 14 41 41 H 0.96998 * 119.99952 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5774 -0.0006 5 7 3.5988 -0.6316 0.0049 6 6 2.3837 -1.1205 -0.0006 7 6 1.9993 -2.5531 -0.0008 8 8 0.8255 -2.8671 -0.0005 9 7 2.9518 -3.5065 -0.0014 10 6 2.5721 -4.9214 -0.0021 11 6 3.8331 -5.7879 -0.0020 12 1 4.4252 -5.5751 0.8882 13 6 3.4401 -7.2728 -0.0209 14 6 4.7025 -8.1271 -0.1580 15 6 5.4025 -7.7976 -1.4784 16 6 5.8146 -6.3222 -1.4790 17 7 4.6288 -5.4998 -1.2031 18 6 4.2750 -4.4806 -2.0464 19 1 3.2348 -4.2175 -2.1690 20 6 5.2531 -3.7894 -2.7482 21 7 6.5178 -3.9071 -2.4034 22 14 4.7742 -2.6919 -4.1820 23 1 4.5095 -1.3173 -3.6864 24 1 5.8821 -2.6570 -5.1703 25 1 3.5504 -3.2290 -4.8292 26 1 -0.3633 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 2.0559 2.1075 -0.0004 30 1 3.8889 -3.2558 -0.0012 31 1 1.9816 -5.1386 -0.8922 32 1 1.9817 -5.1397 0.8878 33 1 2.7771 -7.4655 -0.8644 34 1 2.9292 -7.5251 0.9084 35 1 4.4300 -9.1824 -0.1448 36 1 5.3757 -7.9155 0.6727 37 1 4.7210 -7.9853 -2.3081 38 1 6.2887 -8.4230 -1.5868 39 1 6.2241 -6.0576 -2.4538 40 1 6.5659 -6.1502 -0.7082 41 1 7.2012 -3.4238 -2.8935 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024750335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:04:52 Heat of formation + Delta-G solvation = 22.748367 kcal Electronic energy + Delta-G solvation = -24618.861216 eV Core-core repulsion = 21115.839876 eV Total energy + Delta-G solvation = -3503.021339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -46.12974 -40.81963 -39.32994 -35.95084 -35.59751 -34.93541 -33.51966 -32.23304 -31.68754 -29.14635 -27.92198 -26.86966 -25.00695 -23.82771 -22.65847 -22.31701 -21.50553 -20.73668 -19.42805 -18.84649 -18.28313 -17.50160 -17.36132 -16.86008 -16.19161 -15.80188 -15.48982 -15.34002 -14.86585 -14.72617 -14.53579 -14.19455 -14.13012 -14.07207 -13.66757 -13.50552 -13.29245 -12.90863 -12.88204 -12.60897 -12.38911 -12.31386 -12.09453 -11.84881 -11.55420 -11.38069 -11.32359 -11.13271 -10.99921 -10.57528 -10.38388 -9.99145 -8.59742 -7.88752 -5.34433 0.16324 0.74919 1.32357 1.36355 1.42308 1.97544 2.15073 2.37930 2.43760 2.99675 3.27377 3.52973 3.64578 3.92896 3.96276 4.12371 4.19808 4.23557 4.38348 4.45623 4.51990 4.60251 4.69221 4.79687 4.83087 4.83576 4.95564 4.97214 5.10789 5.20283 5.26330 5.29276 5.37068 5.44064 5.48693 5.59351 5.69870 5.81342 6.38753 6.44745 7.00238 7.15226 7.17059 7.84200 8.36974 9.15683 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015615 B = 0.006177 C = 0.004953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.687830 B = 4532.044921 C = 5651.614827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.172 4.172 3 C -0.046 4.046 4 O 0.128 5.872 5 N -0.355 5.355 6 C -0.062 4.062 7 C 0.585 3.415 8 O -0.562 6.562 9 N -0.682 5.682 10 C 0.138 3.862 11 C 0.157 3.843 12 H 0.029 0.971 13 C -0.119 4.119 14 C -0.103 4.103 15 C -0.134 4.134 16 C 0.178 3.822 17 N -0.601 5.601 18 C -0.237 4.237 19 H 0.057 0.943 20 C -0.030 4.030 21 N -0.921 5.921 22 Si 0.933 3.067 23 H -0.294 1.294 24 H -0.288 1.288 25 H -0.280 1.280 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.281 0.719 30 H 0.412 0.588 31 H 0.053 0.947 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.056 0.944 37 H 0.047 0.953 38 H 0.065 0.935 39 H 0.048 0.952 40 H -0.001 1.001 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.485 4.730 6.905 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.177 4.177 3 C -0.126 4.126 4 O 0.049 5.951 5 N -0.053 5.053 6 C -0.219 4.219 7 C 0.369 3.631 8 O -0.442 6.442 9 N -0.331 5.331 10 C 0.014 3.986 11 C 0.051 3.949 12 H 0.047 0.953 13 C -0.159 4.159 14 C -0.140 4.140 15 C -0.173 4.173 16 C 0.053 3.947 17 N -0.326 5.326 18 C -0.368 4.368 19 H 0.074 0.926 20 C -0.227 4.227 21 N -0.566 5.566 22 Si 0.763 3.237 23 H -0.221 1.221 24 H -0.214 1.214 25 H -0.206 1.206 26 H 0.103 0.897 27 H 0.123 0.877 28 H 0.076 0.924 29 H 0.296 0.704 30 H 0.249 0.751 31 H 0.071 0.929 32 H 0.100 0.900 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.017 0.983 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.957 3.882 6.838 11.187 hybrid contribution -0.001 0.905 -1.148 1.462 sum -7.958 4.787 5.690 10.891 Atomic orbital electron populations 1.20211 0.85110 1.03987 1.03702 1.21759 1.00251 0.89581 1.06126 1.26771 0.80565 1.02842 1.02422 1.84756 1.31182 1.14405 1.64734 1.74329 1.22270 0.92604 1.16098 1.23671 0.90518 0.97482 1.10256 1.17162 0.85402 0.83342 0.77172 1.90669 1.17994 1.82406 1.53142 1.46035 1.10214 1.06472 1.70383 1.21404 0.97083 0.78882 1.01199 1.21023 0.90430 0.94074 0.89418 0.95295 1.21951 0.97989 0.93848 1.02075 1.21350 0.96414 0.99414 0.96830 1.22036 0.99926 0.97345 0.97992 1.20582 0.87473 0.88041 0.98652 1.44261 1.29732 1.34961 1.23607 1.19098 0.91160 1.08503 1.18015 0.92566 1.25468 0.95784 0.99327 1.02116 1.70100 0.99923 1.45387 1.41230 0.85799 0.77141 0.79504 0.81227 1.22097 1.21405 1.20588 0.89687 0.87712 0.92354 0.70398 0.75109 0.92870 0.89980 0.92491 0.89729 0.90429 0.92549 0.93438 0.91644 0.93311 0.98295 0.94253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.61 10.01 71.24 0.71 -0.90 16 2 C -0.17 -4.76 6.34 -19.54 -0.12 -4.88 16 3 C -0.05 -0.94 12.24 67.14 0.82 -0.12 16 4 O 0.13 3.81 11.18 71.90 0.80 4.62 16 5 N -0.35 -13.66 11.84 -49.52 -0.59 -14.24 16 6 C -0.06 -2.33 7.19 42.96 0.31 -2.02 16 7 C 0.58 24.48 7.85 86.93 0.68 25.17 16 8 O -0.56 -24.36 15.34 -3.72 -0.06 -24.42 16 9 N -0.68 -29.04 3.85 -465.52 -1.79 -30.83 16 10 C 0.14 5.34 4.44 86.38 0.38 5.73 16 11 C 0.16 6.12 3.03 45.12 0.14 6.26 16 12 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 13 C -0.12 -3.74 5.40 30.82 0.17 -3.58 16 14 C -0.10 -3.09 5.88 30.62 0.18 -2.91 16 15 C -0.13 -4.85 6.08 30.67 0.19 -4.66 16 16 C 0.18 8.31 5.27 86.36 0.45 8.77 16 17 N -0.60 -28.59 2.97 -674.42 -2.00 -30.59 16 18 C -0.24 -12.57 6.96 84.03 0.58 -11.98 16 19 H 0.06 3.09 5.88 -2.91 -0.02 3.07 16 20 C -0.03 -1.67 4.96 84.86 0.42 -1.25 16 21 N -0.92 -53.38 11.25 21.65 0.24 -53.14 16 22 Si 0.93 46.46 29.58 68.60 2.03 48.49 16 23 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 24 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 25 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 26 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 27 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.64 6.89 -2.39 -0.02 1.62 16 29 H 0.28 1.86 8.06 -2.91 -0.02 1.84 16 30 H 0.41 19.30 7.15 -92.70 -0.66 18.64 16 31 H 0.05 2.24 7.42 -2.39 -0.02 2.22 16 32 H 0.08 2.79 8.14 -2.38 -0.02 2.77 16 33 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.05 2.61 6.20 -2.39 -0.01 2.59 16 40 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 41 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -69.43 332.41 3.94 -65.48 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.38 Total: 21.01 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: 4.92 Total: 13.62 kcal Atomic # 7 Polarization: -124.67 SS G_CDS: -4.13 Total: -128.80 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: 0.75 Total: -19.80 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -69.43 3.94 -65.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024750335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.232 kcal (2) G-P(sol) polarization free energy of solvation -69.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds