Wall clock time and date at job start Fri Apr 10 2020 20:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35324 * 128.03742 * 2 1 4 4 O 1.34016 * 106.66732 * 179.97438 * 3 2 1 5 5 N 1.20907 * 111.84708 * 359.70536 * 4 3 2 6 6 C 1.30988 * 111.43961 * 0.48402 * 5 4 3 7 7 C 1.48328 * 126.94195 * 179.79403 * 6 5 4 8 8 O 1.21491 * 120.00243 * 179.68791 * 7 6 5 9 9 N 1.34782 * 119.99638 * 359.69575 * 7 6 5 10 10 C 1.46498 * 119.99890 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47235 * 179.97438 * 10 9 7 12 12 H 1.09007 * 109.69971 * 299.96507 * 11 10 9 13 13 C 1.52759 * 109.51462 * 179.84803 * 11 10 9 14 14 C 1.53034 * 109.38797 * 185.70492 * 13 11 10 15 15 C 1.53042 * 109.53829 * 61.23781 * 14 13 11 16 16 C 1.53189 * 109.31235 * 298.63605 * 15 14 13 17 17 N 1.46923 * 109.58908 * 60.31891 * 11 10 9 18 18 C 1.36939 * 120.62874 * 353.41903 * 17 11 10 19 19 H 1.07995 * 119.99926 * 30.89436 * 18 17 11 20 20 C 1.38813 * 119.99728 * 210.89537 * 18 17 11 21 21 N 1.31611 * 120.00743 * 13.70129 * 20 18 17 22 22 Si 1.86809 * 119.99430 * 193.70651 * 20 18 17 23 23 H 1.48500 * 109.46752 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.46935 * 299.99778 * 22 20 18 25 25 H 1.48499 * 109.47151 * 59.99724 * 22 20 18 26 26 H 1.08994 * 109.47188 * 270.00116 * 1 2 3 27 27 H 1.08996 * 109.46624 * 30.00683 * 1 2 3 28 28 H 1.09001 * 109.46725 * 150.00017 * 1 2 3 29 29 H 1.07997 * 126.66494 * 359.97438 * 3 2 1 30 30 H 0.97001 * 120.00331 * 359.97438 * 9 7 6 31 31 H 1.08998 * 109.47588 * 59.99533 * 10 9 7 32 32 H 1.08997 * 109.46833 * 299.99815 * 10 9 7 33 33 H 1.09005 * 109.56456 * 65.66507 * 13 11 10 34 34 H 1.09002 * 109.38262 * 305.63445 * 13 11 10 35 35 H 1.08998 * 109.45962 * 301.21508 * 14 13 11 36 36 H 1.09002 * 109.45106 * 181.24924 * 14 13 11 37 37 H 1.08997 * 109.49766 * 178.68492 * 15 14 13 38 38 H 1.09000 * 109.49753 * 58.58878 * 15 14 13 39 39 H 1.08995 * 109.58956 * 294.84651 * 16 15 14 40 40 H 1.08997 * 109.70706 * 174.49143 * 16 15 14 41 41 H 0.96997 * 120.00979 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0658 0.0000 4 8 3.5888 0.5775 0.0006 5 7 3.5989 -0.6315 0.0067 6 6 2.3837 -1.1205 0.0007 7 6 1.9992 -2.5531 0.0009 8 8 0.8256 -2.8671 0.0006 9 7 2.9519 -3.5065 0.0016 10 6 2.5723 -4.9214 0.0024 11 6 3.8332 -5.7878 0.0025 12 1 4.4261 -5.5739 -0.8869 13 6 3.4384 -7.2635 0.0071 14 6 4.6950 -8.1251 0.1507 15 6 5.3868 -7.8043 1.4776 16 6 5.8070 -6.3312 1.4866 17 7 4.6277 -5.5013 1.2047 18 6 4.2726 -4.4837 2.0495 19 1 3.2329 -4.2158 2.1650 20 6 5.2493 -3.7965 2.7572 21 7 6.5165 -3.9279 2.4271 22 14 4.7647 -2.6854 4.1786 23 1 5.9834 -2.0719 4.7649 24 1 3.8602 -1.6162 3.6849 25 1 4.0655 -3.4852 5.2161 26 1 -0.3633 0.0000 1.0276 27 1 -0.3632 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 2.0559 2.1075 -0.0004 30 1 3.8890 -3.2558 0.0016 31 1 1.9819 -5.1397 -0.8874 32 1 1.9817 -5.1386 0.8925 33 1 2.9335 -7.5092 -0.9272 34 1 2.7677 -7.4559 0.8446 35 1 5.3758 -7.9146 -0.6741 36 1 4.4166 -9.1788 0.1318 37 1 6.2687 -8.4348 1.5898 38 1 4.6980 -7.9912 2.3015 39 1 6.5640 -6.1624 0.7208 40 1 6.2120 -6.0705 2.4644 41 1 7.1989 -3.4474 2.9214 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001024750337.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:04:54 Heat of formation + Delta-G solvation = 22.700493 kcal Electronic energy + Delta-G solvation = -24622.242210 eV Core-core repulsion = 21119.218795 eV Total energy + Delta-G solvation = -3503.023415 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 293.153 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.12964 -40.83083 -39.35817 -35.95271 -35.59938 -34.94911 -33.52305 -32.23992 -31.71276 -29.15088 -27.91634 -26.87607 -25.00707 -23.83760 -22.66044 -22.32543 -21.51013 -20.72705 -19.43169 -18.84830 -18.28344 -17.51142 -17.36517 -16.86481 -16.19570 -15.81496 -15.46081 -15.36217 -14.86660 -14.73493 -14.53636 -14.20930 -14.11527 -14.08891 -13.68286 -13.50650 -13.28319 -12.90706 -12.88658 -12.62050 -12.39404 -12.31349 -12.10387 -11.83817 -11.55262 -11.38707 -11.32105 -11.13136 -11.00820 -10.57293 -10.38798 -9.99358 -8.59832 -7.88608 -5.34461 0.16212 0.74642 1.33658 1.36078 1.40892 1.97296 2.15146 2.37791 2.43656 2.99504 3.27533 3.52849 3.64625 3.92133 3.96055 4.12255 4.19773 4.24286 4.38018 4.45492 4.51972 4.60288 4.69645 4.78598 4.82859 4.83404 4.95721 4.97300 5.10830 5.19992 5.26125 5.29136 5.36772 5.43824 5.48673 5.59344 5.69702 5.81655 6.38773 6.44541 7.00031 7.15411 7.16897 7.84264 8.36859 9.16021 Molecular weight = 293.15amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.006179 C = 0.004952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.165941 B = 4530.396291 C = 5652.505917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.172 4.172 3 C -0.046 4.046 4 O 0.128 5.872 5 N -0.355 5.355 6 C -0.062 4.062 7 C 0.585 3.415 8 O -0.563 6.563 9 N -0.682 5.682 10 C 0.137 3.863 11 C 0.158 3.842 12 H 0.029 0.971 13 C -0.120 4.120 14 C -0.102 4.102 15 C -0.134 4.134 16 C 0.178 3.822 17 N -0.601 5.601 18 C -0.238 4.238 19 H 0.057 0.943 20 C -0.030 4.030 21 N -0.921 5.921 22 Si 0.937 3.063 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 H 0.074 0.926 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.281 0.719 30 H 0.412 0.588 31 H 0.082 0.918 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.047 0.953 39 H -0.001 1.001 40 H 0.049 0.951 41 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.461 4.806 -7.020 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.178 4.178 3 C -0.126 4.126 4 O 0.050 5.950 5 N -0.053 5.053 6 C -0.220 4.220 7 C 0.369 3.631 8 O -0.442 6.442 9 N -0.331 5.331 10 C 0.014 3.986 11 C 0.052 3.948 12 H 0.046 0.954 13 C -0.160 4.160 14 C -0.140 4.140 15 C -0.173 4.173 16 C 0.052 3.948 17 N -0.326 5.326 18 C -0.369 4.369 19 H 0.075 0.925 20 C -0.227 4.227 21 N -0.567 5.567 22 Si 0.767 3.233 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.209 1.209 26 H 0.093 0.907 27 H 0.127 0.873 28 H 0.081 0.919 29 H 0.296 0.704 30 H 0.249 0.751 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.017 0.983 40 H 0.068 0.932 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.925 3.967 -6.945 11.259 hybrid contribution -0.036 0.891 1.177 1.476 sum -7.961 4.858 -5.768 10.966 Atomic orbital electron populations 1.20210 0.85134 1.04349 1.03316 1.21765 1.00253 0.89611 1.06151 1.26774 0.80568 1.02828 1.02395 1.84754 1.31158 1.14391 1.64710 1.74324 1.22257 0.92608 1.16091 1.23675 0.90544 0.97491 1.10241 1.17166 0.85407 0.83355 0.77149 1.90665 1.18002 1.82414 1.53152 1.46034 1.10202 1.06474 1.70394 1.21420 0.97088 0.78880 1.01210 1.20833 0.90457 0.94128 0.89427 0.95363 1.21810 0.98067 0.93948 1.02139 1.21346 0.96456 0.99406 0.96785 1.22042 0.99942 0.97406 0.97955 1.20588 0.87561 0.87920 0.98700 1.44232 1.30147 1.34775 1.23405 1.19088 0.91199 1.08620 1.17970 0.92521 1.25472 0.95726 0.99356 1.02134 1.70083 0.99767 1.45498 1.41339 0.85824 0.76631 0.79477 0.81379 1.21605 1.21844 1.20909 0.90692 0.87252 0.91855 0.70375 0.75113 0.89962 0.92870 0.89646 0.92511 0.92537 0.90418 0.91638 0.93463 0.98308 0.93229 0.94235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.62 10.01 71.24 0.71 -0.91 16 2 C -0.17 -4.80 6.34 -19.53 -0.12 -4.92 16 3 C -0.05 -0.94 12.24 67.15 0.82 -0.11 16 4 O 0.13 3.81 11.18 71.88 0.80 4.62 16 5 N -0.35 -13.63 11.84 -49.51 -0.59 -14.22 16 6 C -0.06 -2.35 7.19 42.96 0.31 -2.04 16 7 C 0.58 24.55 7.85 86.93 0.68 25.24 16 8 O -0.56 -24.43 15.34 -3.69 -0.06 -24.49 16 9 N -0.68 -29.07 3.84 -465.52 -1.79 -30.85 16 10 C 0.14 5.33 4.42 86.38 0.38 5.71 16 11 C 0.16 6.16 2.99 44.83 0.13 6.30 16 12 H 0.03 1.15 8.14 -2.38 -0.02 1.13 16 13 C -0.12 -3.78 5.34 30.53 0.16 -3.61 16 14 C -0.10 -3.09 5.89 30.62 0.18 -2.91 16 15 C -0.13 -4.87 6.08 30.67 0.19 -4.69 16 16 C 0.18 8.31 5.27 86.36 0.46 8.77 16 17 N -0.60 -28.62 2.98 -676.05 -2.01 -30.63 16 18 C -0.24 -12.63 6.98 84.03 0.59 -12.04 16 19 H 0.06 3.11 5.85 -2.91 -0.02 3.09 16 20 C -0.03 -1.67 4.97 84.86 0.42 -1.24 16 21 N -0.92 -53.44 11.22 21.65 0.24 -53.20 16 22 Si 0.94 46.62 29.58 68.60 2.03 48.65 16 23 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 24 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 25 H -0.28 -13.84 7.11 99.48 0.71 -13.14 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.71 6.89 -2.39 -0.02 1.70 16 29 H 0.28 1.84 8.06 -2.91 -0.02 1.82 16 30 H 0.41 19.29 7.16 -92.71 -0.66 18.63 16 31 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.05 2.24 7.41 -2.39 -0.02 2.22 16 33 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 40 H 0.05 2.66 6.18 -2.39 -0.01 2.64 16 41 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -69.50 332.30 3.93 -65.58 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 0.38 Total: 21.01 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 4.91 Total: 13.54 kcal Atomic # 7 Polarization: -124.76 SS G_CDS: -4.14 Total: -128.90 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: 0.75 Total: -19.87 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -69.50 3.93 -65.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001024750337.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.277 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds