Wall clock time and date at job start Fri Apr 10 2020 20:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46894 * 110.99855 * 2 1 4 4 C 1.53001 * 109.47241 * 286.42968 * 3 2 1 5 5 O 1.42890 * 109.47094 * 67.73996 * 4 3 2 6 6 C 1.42901 * 114.00201 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47553 * 179.97438 * 6 5 4 8 8 H 1.08007 * 120.00110 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00099 * 180.02562 * 7 6 5 10 10 N 1.31523 * 120.00028 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 120.00241 * 359.97438 * 9 7 6 12 12 H 1.48493 * 109.47080 * 89.99842 * 11 9 7 13 13 H 1.48497 * 109.47226 * 210.00205 * 11 9 7 14 14 H 1.48501 * 109.46587 * 330.00052 * 11 9 7 15 15 C 1.46898 * 111.00072 * 123.95838 * 2 1 3 16 16 C 1.53000 * 109.47471 * 71.98606 * 15 2 1 17 17 C 1.53001 * 109.46879 * 54.25940 * 16 15 2 18 18 O 1.42900 * 109.47117 * 294.26136 * 16 15 2 19 19 C 1.50695 * 109.47124 * 174.26248 * 16 15 2 20 20 C 1.38233 * 120.00289 * 329.72777 * 19 16 15 21 21 C 1.38233 * 120.00404 * 179.79233 * 20 19 16 22 22 C 1.38235 * 119.99877 * 0.43551 * 21 20 19 23 23 C 1.38238 * 119.99786 * 359.81680 * 22 21 20 24 24 C 1.38231 * 120.00193 * 359.97438 * 23 22 21 25 25 H 1.08996 * 109.47108 * 54.02760 * 1 2 3 26 26 H 1.09004 * 109.47197 * 174.03175 * 1 2 3 27 27 H 1.09000 * 109.47203 * 294.02633 * 1 2 3 28 28 H 1.09002 * 109.47500 * 46.43331 * 3 2 1 29 29 H 1.08997 * 109.47028 * 166.43089 * 3 2 1 30 30 H 1.08999 * 109.47137 * 187.74326 * 4 3 2 31 31 H 1.09005 * 109.47049 * 307.73855 * 4 3 2 32 32 H 1.08993 * 109.47416 * 300.00470 * 6 5 4 33 33 H 1.09006 * 109.47245 * 59.99825 * 6 5 4 34 34 H 0.96995 * 120.00271 * 179.97438 * 10 9 7 35 35 H 1.08994 * 109.47283 * 191.98965 * 15 2 1 36 36 H 1.09005 * 109.46990 * 311.98795 * 15 2 1 37 37 H 1.08998 * 109.46951 * 60.00285 * 17 16 15 38 38 H 1.09005 * 109.46406 * 180.02562 * 17 16 15 39 39 H 1.08992 * 109.47028 * 299.99686 * 17 16 15 40 40 H 0.96703 * 114.00046 * 299.99972 * 18 16 15 41 41 H 1.07997 * 119.99662 * 359.97438 * 20 19 16 42 42 H 1.07995 * 120.00551 * 180.27436 * 21 20 19 43 43 H 1.07998 * 120.00123 * 179.83471 * 22 21 20 44 44 H 1.08003 * 120.00214 * 179.97438 * 23 22 21 45 45 H 1.08008 * 120.00220 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7973 1.9938 -1.3836 5 8 0.4018 2.1841 -1.6248 6 6 0.1056 2.7638 -2.8970 7 6 -1.3863 2.9176 -3.0439 8 1 -2.0427 2.6036 -2.2458 9 6 -1.9133 3.4581 -4.1976 10 7 -3.2153 3.5928 -4.3256 11 14 -0.7780 4.0006 -5.5783 12 1 -0.5528 2.8654 -6.5088 13 1 -1.4000 5.1294 -6.3159 14 1 0.5213 4.4381 -5.0076 15 6 1.9955 -0.7661 1.1375 16 6 1.7619 -2.2592 0.8988 17 6 2.3577 -2.6589 -0.4525 18 8 0.3583 -2.5276 0.8987 19 6 2.4250 -3.0528 1.9949 20 6 3.5643 -2.5664 2.6082 21 6 4.1701 -3.2924 3.6165 22 6 3.6418 -4.5092 4.0054 23 6 2.5054 -4.9981 3.3885 24 6 1.8971 -4.2700 2.3832 25 1 -0.3633 0.6036 -0.8317 26 1 -0.3634 -1.0221 -0.1069 27 1 -0.3633 0.4184 0.9386 28 1 1.4644 1.9645 0.7446 29 1 3.0582 1.3526 0.2411 30 1 2.3079 2.9558 -1.4257 31 1 2.2101 1.3298 -2.1432 32 1 0.5810 3.7419 -2.9701 33 1 0.4834 2.1162 -3.6882 34 1 -3.5861 3.9734 -5.1371 35 1 3.0641 -0.5772 1.2393 36 1 1.4839 -0.4596 2.0499 37 1 3.4283 -2.4542 -0.4524 38 1 2.1908 -3.7226 -0.6227 39 1 1.8780 -2.0849 -1.2451 40 1 -0.0862 -2.2979 1.7263 41 1 3.9794 -1.6178 2.3015 42 1 5.0577 -2.9104 4.0987 43 1 4.1166 -5.0777 4.7913 44 1 2.0927 -5.9489 3.6920 45 1 1.0089 -4.6518 1.9014 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823605836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:04:37 Heat of formation + Delta-G solvation = -58.760648 kcal Electronic energy + Delta-G solvation = -23737.732782 eV Core-core repulsion = 20334.717290 eV Total energy + Delta-G solvation = -3403.015492 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 2.79 seconds Orbital eigenvalues (eV) -40.24419 -38.24230 -37.07097 -35.40830 -32.78421 -32.51995 -31.11632 -29.97583 -29.09882 -27.53622 -26.97632 -24.21386 -23.13948 -22.44964 -21.79651 -20.82526 -20.13827 -17.82109 -16.86162 -16.54909 -15.90993 -15.81296 -15.54525 -15.07210 -14.86237 -14.61089 -14.31815 -13.93445 -13.70331 -13.53174 -13.17995 -12.94827 -12.63330 -12.39826 -12.33442 -12.22842 -12.01978 -11.78025 -11.49727 -11.37503 -11.21196 -11.18297 -10.85839 -10.78867 -10.68152 -10.54140 -9.84828 -9.64803 -9.16978 -9.13715 -8.98762 -8.76183 -8.40323 -8.03200 -6.09712 -4.08485 1.07408 1.15336 3.26804 3.33525 3.35060 3.52187 3.93787 4.16639 4.37522 4.59210 4.64094 4.71004 4.75283 4.89222 4.91664 5.01362 5.21936 5.22117 5.31616 5.35434 5.48829 5.64527 5.67698 5.69773 5.78206 5.87993 5.90488 5.94997 6.00018 6.12243 6.20624 6.23532 6.26326 6.32805 6.38449 6.44494 6.63833 6.74531 7.01236 7.07134 7.35574 7.40154 7.57638 7.64012 8.04556 8.68708 9.01235 9.49935 11.03285 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.035039 B = 0.002847 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.918672 B = 9834.210460 C =10147.335181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 N -0.526 5.526 3 C 0.058 3.942 4 C 0.063 3.937 5 O -0.376 6.376 6 C 0.168 3.832 7 C -0.517 4.517 8 H 0.082 0.918 9 C 0.072 3.928 10 N -0.896 5.896 11 Si 0.876 3.124 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.267 1.267 15 C 0.029 3.971 16 C 0.180 3.820 17 C -0.123 4.123 18 O -0.543 6.543 19 C -0.111 4.111 20 C -0.114 4.114 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.122 4.122 24 C -0.103 4.103 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.010 0.990 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.048 0.952 32 H 0.001 0.999 33 H -0.001 1.001 34 H 0.266 0.734 35 H 0.078 0.922 36 H 0.034 0.966 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.372 0.628 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.801 -14.703 15.792 26.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 N -0.250 5.250 3 C -0.070 4.070 4 C -0.015 4.015 5 O -0.295 6.295 6 C 0.093 3.907 7 C -0.555 4.555 8 H 0.100 0.900 9 C -0.130 4.130 10 N -0.535 5.535 11 Si 0.703 3.297 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.191 1.191 15 C -0.100 4.100 16 C 0.139 3.861 17 C -0.180 4.180 18 O -0.348 6.348 19 C -0.111 4.111 20 C -0.132 4.132 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.140 4.140 24 C -0.121 4.121 25 H 0.126 0.874 26 H 0.106 0.894 27 H 0.028 0.972 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.018 0.982 33 H 0.017 0.983 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.105 0.895 40 H 0.220 0.780 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.137 0.863 44 H 0.139 0.861 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 15.793 -15.100 14.747 26.361 hybrid contribution 0.437 1.024 0.486 1.215 sum 16.230 -14.077 15.233 26.336 Atomic orbital electron populations 1.23115 0.85270 1.04400 1.01971 1.61965 1.10058 1.12559 1.40388 1.22178 0.98901 0.88954 0.96967 1.22331 0.85684 0.97587 0.95861 1.87860 1.20454 1.82788 1.38415 1.20586 0.97579 0.91442 0.81125 1.20888 0.89362 1.41500 1.03735 0.90027 1.24772 0.95037 0.95262 0.97937 1.69878 1.10690 1.45100 1.27792 0.86846 0.81363 0.78884 0.82622 1.19919 1.20884 1.19149 1.22863 1.00421 0.93951 0.92716 1.19993 0.80960 0.91309 0.93844 1.21596 0.99948 1.01299 0.95188 1.86615 1.19684 1.87653 1.40881 1.20642 0.96650 0.96139 0.97717 1.21147 0.95674 1.00009 0.96362 1.21145 1.00028 0.95202 0.97630 1.21173 0.96586 0.96323 1.00070 1.21176 0.96166 0.99921 0.96755 1.21057 1.00193 0.94021 0.96833 0.87357 0.89408 0.97174 0.94162 0.90771 0.94207 0.93407 0.98163 0.98338 0.92411 0.90357 0.94766 0.91805 0.92849 0.89542 0.78039 0.85794 0.86131 0.86282 0.86116 0.85303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 8.83 60.07 0.53 0.52 16 2 N -0.53 -7.62 3.65 -242.92 -0.89 -8.51 16 3 C 0.06 0.84 5.53 -3.83 -0.02 0.82 16 4 C 0.06 1.11 6.23 37.16 0.23 1.34 16 5 O -0.38 -8.53 7.35 -35.23 -0.26 -8.79 16 6 C 0.17 4.25 4.76 36.00 0.17 4.43 16 7 C -0.52 -15.32 9.99 -34.44 -0.34 -15.66 16 8 H 0.08 2.63 8.06 -52.48 -0.42 2.21 16 9 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 10 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 11 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 15 C 0.03 0.33 3.80 -3.83 -0.01 0.32 16 16 C 0.18 1.98 0.97 -91.77 -0.09 1.89 16 17 C -0.12 -1.45 8.60 37.16 0.32 -1.13 16 18 O -0.54 -6.35 8.89 -35.23 -0.31 -6.66 16 19 C -0.11 -1.10 4.80 -104.63 -0.50 -1.60 16 20 C -0.11 -1.04 9.14 -39.58 -0.36 -1.40 16 21 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 22 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.42 16 24 C -0.10 -0.98 9.35 -39.58 -0.37 -1.35 16 25 H 0.11 2.25 5.14 -51.93 -0.27 1.98 16 26 H 0.09 1.41 5.42 -51.93 -0.28 1.13 16 27 H 0.01 0.16 8.07 -51.93 -0.42 -0.26 16 28 H 0.04 0.61 8.03 -51.93 -0.42 0.20 16 29 H 0.07 0.86 7.69 -51.93 -0.40 0.46 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.00 0.02 7.20 -51.93 -0.37 -0.36 16 33 H 0.00 -0.03 7.57 -51.93 -0.39 -0.42 16 34 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.08 0.78 5.74 -51.93 -0.30 0.49 16 36 H 0.03 0.39 8.00 -51.93 -0.42 -0.02 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.21 7.45 -51.93 -0.39 0.82 16 40 H 0.37 3.41 9.04 45.56 0.41 3.82 16 41 H 0.12 0.99 6.04 -52.49 -0.32 0.68 16 42 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.12 0.78 8.06 -52.48 -0.42 0.36 16 45 H 0.13 1.20 7.48 -52.48 -0.39 0.80 16 LS Contribution 355.67 15.07 5.36 5.36 Total: -1.00 -32.15 355.67 -8.23 -40.38 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -6.50 Total: 2.31 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -1.74 Total: -14.02 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.11 Total: -35.48 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.57 Total: -15.45 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.15 -8.23 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823605836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.379 kcal (2) G-P(sol) polarization free energy of solvation -32.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.79 seconds