Wall clock time and date at job start Fri Apr 10 2020 20:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 116.99716 * 2 1 4 4 C 1.38746 * 120.05886 * 0.02562 * 3 2 1 5 5 C 1.38116 * 119.94624 * 179.97438 * 4 3 2 6 6 C 1.38289 * 120.05455 * 359.74676 * 5 4 3 7 7 C 1.38241 * 120.11059 * 0.51312 * 6 5 4 8 8 C 1.50699 * 119.97460 * 179.76607 * 7 6 5 9 9 H 1.08997 * 109.47516 * 159.71883 * 8 7 6 10 10 O 1.42897 * 109.47140 * 39.72089 * 8 7 6 11 11 C 1.53006 * 109.47053 * 279.72416 * 8 7 6 12 12 N 1.46898 * 109.47006 * 184.99757 * 11 8 7 13 13 C 1.46903 * 110.99673 * 179.97438 * 12 11 8 14 14 C 1.53003 * 109.46899 * 179.97438 * 13 12 11 15 15 H 1.09002 * 109.47054 * 55.00270 * 14 13 12 16 16 C 1.52995 * 109.47460 * 295.00352 * 14 13 12 17 17 C 1.52998 * 109.47291 * 175.00111 * 14 13 12 18 18 C 1.50694 * 109.47468 * 184.99992 * 17 14 13 19 19 H 1.07998 * 119.99884 * 0.02562 * 18 17 14 20 20 C 1.37874 * 120.00022 * 179.97438 * 18 17 14 21 21 N 1.31523 * 120.00143 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00196 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47085 * 89.99824 * 22 20 18 24 24 H 1.48501 * 109.47021 * 209.99957 * 22 20 18 25 25 H 1.48495 * 109.46720 * 329.99890 * 22 20 18 26 26 C 1.38169 * 120.05480 * 359.48607 * 7 6 5 27 27 H 1.09001 * 109.47112 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46449 * 299.99658 * 1 2 3 29 29 H 1.08998 * 109.47425 * 59.99762 * 1 2 3 30 30 H 1.08006 * 120.02872 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.97783 * 180.02562 * 5 4 3 32 32 H 1.08001 * 119.94860 * 180.27793 * 6 5 4 33 33 H 0.96702 * 114.00429 * 300.00137 * 10 8 7 34 34 H 1.09001 * 109.47002 * 304.99539 * 11 8 7 35 35 H 1.08993 * 109.46955 * 64.99976 * 11 8 7 36 36 H 1.00895 * 111.00438 * 303.95603 * 12 11 8 37 37 H 1.08993 * 109.47323 * 299.99830 * 13 12 11 38 38 H 1.08995 * 109.46831 * 60.00909 * 13 12 11 39 39 H 1.09006 * 109.47185 * 59.99889 * 16 14 13 40 40 H 1.09001 * 109.47385 * 179.97438 * 16 14 13 41 41 H 1.08998 * 109.47157 * 300.00441 * 16 14 13 42 42 H 1.08999 * 109.47243 * 305.00380 * 17 14 13 43 43 H 1.09004 * 109.46823 * 65.00225 * 17 14 13 44 44 H 0.96992 * 120.00056 * 180.02562 * 21 20 18 45 45 H 1.08000 * 120.03017 * 180.27909 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6047 0.0011 6 6 3.3019 3.6757 0.0064 7 6 4.0559 2.5171 0.0004 8 6 5.5608 2.5981 0.0009 9 1 5.9754 1.6534 0.3522 10 8 5.9807 3.6541 0.8673 11 6 6.0570 2.8762 -1.4195 12 7 7.5252 2.8366 -1.4418 13 6 8.0385 3.0992 -2.7930 14 6 9.5676 3.0503 -2.7761 15 1 9.8961 2.0961 -2.3642 16 6 10.1049 4.1915 -1.9101 17 6 10.0985 3.1997 -4.2032 18 6 11.5957 3.0290 -4.2027 19 1 12.1166 2.8331 -3.2771 20 6 12.3006 3.1218 -5.3840 21 7 13.6073 2.9724 -5.3837 22 14 11.3996 3.4599 -6.9851 23 1 11.3182 4.9259 -7.2073 24 1 12.1356 2.8289 -8.1100 25 1 10.0289 2.8937 -6.9108 26 6 3.4311 1.2848 -0.0001 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 0.2128 2.3203 0.0014 31 1 1.3340 4.5114 0.0019 32 1 3.7922 4.6380 0.0113 33 1 5.6480 4.5262 0.6144 34 1 5.6628 2.1186 -2.0969 35 1 5.7152 3.8611 -1.7374 36 1 7.9147 3.4852 -0.7743 37 1 7.6580 2.3430 -3.4795 38 1 7.7105 4.0856 -3.1207 39 1 9.7267 4.0851 -0.8933 40 1 11.1942 4.1564 -1.8977 41 1 9.7763 5.1457 -2.3218 42 1 9.6464 2.4397 -4.8404 43 1 9.8458 4.1897 -4.5831 44 1 14.1031 3.0381 -6.2147 45 1 4.0206 0.3799 -0.0002 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877036429.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:05:42 Heat of formation + Delta-G solvation = -77.705762 kcal Electronic energy + Delta-G solvation = -22741.372464 eV Core-core repulsion = 19337.535450 eV Total energy + Delta-G solvation = -3403.837014 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61258 -38.88489 -37.19096 -36.27581 -33.77041 -32.22020 -31.67558 -30.60102 -28.36066 -27.67299 -27.03297 -25.13022 -23.07618 -22.98340 -21.71671 -21.16491 -19.00599 -18.52559 -16.99000 -16.78520 -16.59893 -16.30613 -16.11549 -15.77170 -15.25933 -14.54787 -14.43465 -14.00213 -13.94442 -13.75861 -13.32584 -13.15109 -12.82701 -12.66120 -12.56562 -12.14406 -12.12130 -11.80416 -11.69848 -11.58710 -11.42098 -11.09551 -10.98615 -10.71151 -10.49221 -10.31463 -9.78405 -9.70367 -9.44243 -9.16480 -9.01860 -8.56508 -8.49032 -8.22128 -5.99163 -3.95917 0.91538 1.09065 2.86389 3.33015 3.35060 3.40568 3.44422 4.08002 4.25909 4.40437 4.49212 4.57886 4.65768 4.71832 4.73104 4.88591 4.95380 5.00218 5.05240 5.16486 5.24206 5.34239 5.56490 5.59402 5.67242 5.71811 5.80104 5.91603 5.99053 6.05304 6.16676 6.21575 6.37731 6.40546 6.49502 6.78851 6.99648 7.01436 7.09747 7.22586 7.35155 7.36743 7.51253 7.64453 7.85691 8.60607 9.06861 9.63707 11.14272 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.002450 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.069644 B =11425.562956 C =11909.001510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.128 3.872 4 C -0.210 4.210 5 C -0.077 4.077 6 C -0.150 4.150 7 C -0.072 4.072 8 C 0.148 3.852 9 H 0.120 0.880 10 O -0.550 6.550 11 C 0.034 3.966 12 N -0.686 5.686 13 C 0.062 3.938 14 C -0.076 4.076 15 H 0.072 0.928 16 C -0.136 4.136 17 C -0.009 4.009 18 C -0.512 4.512 19 H 0.074 0.926 20 C 0.064 3.936 21 N -0.905 5.905 22 Si 0.879 3.121 23 H -0.279 1.279 24 H -0.289 1.289 25 H -0.266 1.266 26 C -0.139 4.139 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.370 0.630 34 H 0.081 0.919 35 H 0.030 0.970 36 H 0.346 0.654 37 H 0.066 0.934 38 H 0.022 0.978 39 H 0.036 0.964 40 H 0.068 0.932 41 H 0.039 0.961 42 H 0.015 0.985 43 H 0.009 0.991 44 H 0.262 0.738 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.828 -0.053 12.169 31.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.230 6.230 3 C 0.083 3.917 4 C -0.229 4.229 5 C -0.095 4.095 6 C -0.168 4.168 7 C -0.073 4.073 8 C 0.089 3.911 9 H 0.137 0.863 10 O -0.355 6.355 11 C -0.096 4.096 12 N -0.318 5.318 13 C -0.066 4.066 14 C -0.094 4.094 15 H 0.090 0.910 16 C -0.194 4.194 17 C -0.047 4.047 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.137 4.137 21 N -0.545 5.545 22 Si 0.706 3.294 23 H -0.205 1.205 24 H -0.215 1.215 25 H -0.191 1.191 26 C -0.158 4.158 27 H 0.119 0.881 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.218 0.782 34 H 0.099 0.901 35 H 0.048 0.952 36 H 0.166 0.834 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.087 0.913 41 H 0.058 0.942 42 H 0.033 0.967 43 H 0.027 0.973 44 H 0.071 0.929 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -28.258 -1.424 12.283 30.846 hybrid contribution -1.216 1.741 -1.441 2.567 sum -29.475 0.317 10.842 31.407 Atomic orbital electron populations 1.23066 0.78323 1.04054 1.01319 1.86091 1.21430 1.26866 1.88645 1.18996 0.92261 0.84217 0.96204 1.21242 1.00028 0.92447 1.09183 1.20888 0.94419 0.97052 0.97187 1.20793 0.93888 0.97884 1.04218 1.20369 0.96690 0.92751 0.97482 1.20951 0.87492 0.92571 0.90106 0.86251 1.86679 1.75944 1.18452 1.54407 1.22589 0.90278 1.00474 0.96295 1.60469 1.04451 1.58340 1.08589 1.22174 0.97155 0.98521 0.88791 1.21030 0.90830 0.99267 0.98316 0.90951 1.21755 1.02688 0.97641 0.97282 1.19605 0.97248 0.95938 0.91861 1.21137 0.90070 1.48225 0.95540 0.90780 1.25039 0.94714 0.94945 0.98983 1.69918 1.06274 1.51005 1.27260 0.86798 0.80382 0.78569 0.83630 1.20474 1.21494 1.19093 1.20278 0.91408 0.98273 1.05812 0.88135 0.92659 0.92617 0.85507 0.85651 0.86028 0.78219 0.90099 0.95176 0.83358 0.91544 0.95928 0.94525 0.91316 0.94154 0.96701 0.97291 0.92857 0.84749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.01 10.50 -19.43 -0.20 -3.21 16 3 C 0.13 1.27 6.69 -39.22 -0.26 1.01 16 4 C -0.21 -1.74 9.04 -39.44 -0.36 -2.10 16 5 C -0.08 -0.61 10.04 -39.61 -0.40 -1.01 16 6 C -0.15 -1.28 9.32 -39.56 -0.37 -1.65 16 7 C -0.07 -0.71 4.97 -104.65 -0.52 -1.23 16 8 C 0.15 1.55 3.45 -27.88 -0.10 1.45 16 9 H 0.12 1.34 8.00 -51.93 -0.42 0.92 16 10 O -0.55 -5.79 12.71 -35.23 -0.45 -6.24 16 11 C 0.03 0.39 5.34 -3.82 -0.02 0.37 16 12 N -0.69 -9.78 6.50 -113.78 -0.74 -10.52 16 13 C 0.06 1.03 5.14 -3.82 -0.02 1.01 16 14 C -0.08 -1.51 2.54 -90.62 -0.23 -1.74 16 15 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 16 C -0.14 -2.54 8.77 37.16 0.33 -2.21 16 17 C -0.01 -0.21 3.52 -27.89 -0.10 -0.31 16 18 C -0.51 -14.58 8.96 -34.44 -0.31 -14.89 16 19 H 0.07 2.26 7.30 -52.49 -0.38 1.88 16 20 C 0.06 1.88 5.47 -17.82 -0.10 1.78 16 21 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 22 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 26 C -0.14 -1.44 9.61 -39.43 -0.38 -1.81 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 30 H 0.13 0.76 6.30 -52.48 -0.33 0.43 16 31 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 32 H 0.12 0.80 6.77 -52.49 -0.36 0.44 16 33 H 0.37 2.68 7.49 45.56 0.34 3.02 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.35 4.86 6.54 -39.29 -0.26 4.60 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 38 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.04 0.58 6.68 -51.93 -0.35 0.24 16 40 H 0.07 1.44 6.95 -51.93 -0.36 1.08 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 43 H 0.01 0.21 7.57 -51.93 -0.39 -0.18 16 44 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 45 H 0.13 1.31 8.04 -52.49 -0.42 0.89 16 LS Contribution 362.08 15.07 5.46 5.46 Total: -1.00 -32.75 362.08 -8.31 -41.06 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.64 Total: 3.71 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -1.84 Total: -20.20 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.03 Total: -37.92 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.65 Total: -9.45 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.75 -8.31 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877036429.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.644 kcal (2) G-P(sol) polarization free energy of solvation -32.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds