Wall clock time and date at job start Fri Apr 10 2020 20:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35892 * 117.00099 * 2 1 4 4 C 1.38761 * 120.05589 * 0.02562 * 3 2 1 5 5 C 1.38124 * 119.94312 * 179.97438 * 4 3 2 6 6 C 1.38285 * 120.05499 * 359.74459 * 5 4 3 7 7 C 1.38242 * 120.11522 * 0.51057 * 6 5 4 8 8 C 1.50692 * 119.97531 * 179.76252 * 7 6 5 9 9 H 1.08999 * 109.47076 * 159.72854 * 8 7 6 10 10 O 1.42898 * 109.47290 * 39.72542 * 8 7 6 11 11 C 1.53007 * 109.47466 * 279.72560 * 8 7 6 12 12 N 1.46891 * 109.47100 * 184.99602 * 11 8 7 13 13 C 1.46900 * 110.99776 * 179.97438 * 12 11 8 14 14 C 1.53006 * 109.47303 * 180.02562 * 13 12 11 15 15 H 1.08998 * 109.46505 * 304.99837 * 14 13 12 16 16 C 1.52997 * 109.47127 * 64.99966 * 14 13 12 17 17 C 1.52992 * 109.47223 * 185.00471 * 14 13 12 18 18 C 1.50697 * 109.47463 * 174.99857 * 17 14 13 19 19 H 1.08007 * 119.99713 * 0.02562 * 18 17 14 20 20 C 1.37879 * 120.00558 * 179.97438 * 18 17 14 21 21 N 1.31509 * 119.99821 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00224 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47114 * 89.99881 * 22 20 18 24 24 H 1.48492 * 109.47167 * 209.99907 * 22 20 18 25 25 H 1.48502 * 109.46795 * 330.00324 * 22 20 18 26 26 C 1.38170 * 120.04943 * 359.49403 * 7 6 5 27 27 H 1.08997 * 109.46837 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47317 * 300.00213 * 1 2 3 29 29 H 1.08998 * 109.46647 * 60.00326 * 1 2 3 30 30 H 1.08001 * 120.02583 * 0.02562 * 4 3 2 31 31 H 1.08003 * 119.96546 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.93931 * 180.27716 * 6 5 4 33 33 H 0.96704 * 113.99828 * 300.00290 * 10 8 7 34 34 H 1.09008 * 109.46480 * 64.99808 * 11 8 7 35 35 H 1.09001 * 109.47078 * 305.00281 * 11 8 7 36 36 H 1.00900 * 111.00730 * 303.95292 * 12 11 8 37 37 H 1.09007 * 109.47006 * 60.00373 * 13 12 11 38 38 H 1.08996 * 109.47541 * 300.00579 * 13 12 11 39 39 H 1.09002 * 109.47153 * 180.02562 * 16 14 13 40 40 H 1.09001 * 109.46832 * 60.00321 * 16 14 13 41 41 H 1.09004 * 109.47261 * 300.00303 * 16 14 13 42 42 H 1.09002 * 109.46906 * 294.99936 * 17 14 13 43 43 H 1.09006 * 109.47717 * 54.99311 * 17 14 13 44 44 H 0.97002 * 120.00259 * 179.97438 * 21 20 18 45 45 H 1.08004 * 120.02181 * 180.28072 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6757 0.0064 7 6 4.0561 2.5171 0.0006 8 6 5.5608 2.5981 0.0010 9 1 5.9754 1.6532 0.3523 10 8 5.9808 3.6540 0.8674 11 6 6.0571 2.8761 -1.4194 12 7 7.5253 2.8365 -1.4416 13 6 8.0386 3.0990 -2.7927 14 6 9.5678 3.0489 -2.7761 15 1 9.9457 3.7427 -2.0252 16 6 10.0279 1.6297 -2.4370 17 6 10.1060 3.4444 -4.1525 18 6 11.6105 3.5144 -4.1025 19 1 12.1308 3.2980 -3.1811 20 6 12.3229 3.8537 -5.2332 21 7 11.6894 4.1168 -6.3552 22 14 14.1878 3.9412 -5.1709 23 1 14.7573 2.6130 -5.5125 24 1 14.6688 4.9518 -6.1468 25 1 14.6198 4.3283 -3.8039 26 6 3.4311 1.2848 -0.0001 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3632 0.5138 -0.8900 30 1 0.2128 2.3203 0.0014 31 1 1.3340 4.5113 0.0019 32 1 3.7923 4.6380 0.0113 33 1 5.6481 4.5261 0.6145 34 1 5.7153 3.8611 -1.7374 35 1 5.6628 2.1185 -2.0968 36 1 7.9148 3.4852 -0.7742 37 1 7.7106 4.0854 -3.1207 38 1 7.6581 2.3428 -3.4793 39 1 11.1173 1.5942 -2.4247 40 1 9.6498 0.9361 -3.1880 41 1 9.6444 1.3480 -1.4563 42 1 9.8011 2.7011 -4.8892 43 1 9.7060 4.4189 -4.4329 44 1 12.1905 4.3559 -7.1506 45 1 4.0207 0.3799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877036551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:05:47 Heat of formation + Delta-G solvation = -81.764355 kcal Electronic energy + Delta-G solvation = -22676.038967 eV Core-core repulsion = 19272.025959 eV Total energy + Delta-G solvation = -3404.013008 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.57774 -38.83545 -37.07547 -36.14215 -33.73168 -32.19408 -31.60663 -30.56001 -28.16477 -27.52466 -26.62520 -24.92370 -23.11983 -22.94802 -21.98681 -21.13629 -19.08041 -18.49229 -16.75952 -16.67000 -16.31473 -16.25409 -16.08828 -15.62881 -15.10751 -14.61389 -14.40154 -13.99219 -13.93930 -13.70657 -13.41819 -13.07081 -12.71746 -12.54115 -12.23222 -12.08235 -12.00123 -11.69823 -11.47052 -11.38760 -11.31224 -11.03289 -10.80850 -10.73206 -10.44050 -10.25332 -10.12848 -9.66332 -9.20525 -9.08252 -8.90539 -8.53004 -8.30371 -8.11373 -5.95126 -3.96009 0.95126 1.12606 2.89203 3.35212 3.38702 3.41284 3.44911 4.13571 4.30416 4.43685 4.50004 4.63171 4.68908 4.74351 4.76921 4.94236 5.00061 5.04466 5.08352 5.21220 5.28438 5.40665 5.63217 5.64727 5.77015 5.78589 5.94072 5.95431 6.09040 6.19198 6.25458 6.41277 6.44600 6.58227 6.73183 7.04307 7.04475 7.22158 7.23165 7.36105 7.41900 7.68932 7.73421 7.88498 8.05314 8.49593 9.10412 9.67203 11.16433 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.032403 B = 0.002261 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.912750 B =12381.787637 C =12553.739756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.317 6.317 3 C 0.128 3.872 4 C -0.211 4.211 5 C -0.077 4.077 6 C -0.149 4.149 7 C -0.072 4.072 8 C 0.149 3.851 9 H 0.119 0.881 10 O -0.550 6.550 11 C 0.034 3.966 12 N -0.684 5.684 13 C 0.064 3.936 14 C -0.082 4.082 15 H 0.054 0.946 16 C -0.123 4.123 17 C 0.027 3.973 18 C -0.511 4.511 19 H 0.056 0.944 20 C 0.054 3.946 21 N -0.898 5.898 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.288 1.288 25 H -0.274 1.274 26 C -0.139 4.139 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.127 0.873 31 H 0.126 0.874 32 H 0.122 0.878 33 H 0.371 0.629 34 H 0.030 0.970 35 H 0.080 0.920 36 H 0.344 0.656 37 H 0.023 0.977 38 H 0.065 0.935 39 H 0.053 0.947 40 H 0.039 0.961 41 H 0.042 0.958 42 H 0.016 0.984 43 H 0.012 0.988 44 H 0.259 0.741 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.398 -3.471 14.066 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.229 4.229 5 C -0.095 4.095 6 C -0.167 4.167 7 C -0.073 4.073 8 C 0.089 3.911 9 H 0.137 0.863 10 O -0.355 6.355 11 C -0.096 4.096 12 N -0.315 5.315 13 C -0.064 4.064 14 C -0.101 4.101 15 H 0.072 0.928 16 C -0.180 4.180 17 C -0.011 4.011 18 C -0.550 4.550 19 H 0.075 0.925 20 C -0.147 4.147 21 N -0.537 5.537 22 Si 0.718 3.282 23 H -0.207 1.207 24 H -0.214 1.214 25 H -0.199 1.199 26 C -0.158 4.158 27 H 0.118 0.882 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.140 0.860 33 H 0.218 0.782 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.162 0.838 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.955 -4.791 14.111 28.212 hybrid contribution 0.135 1.638 -0.631 1.761 sum -23.820 -3.153 13.480 27.551 Atomic orbital electron populations 1.23062 0.78340 1.04031 1.01323 1.86086 1.21417 1.26893 1.88664 1.18994 0.92260 0.84201 0.96249 1.21244 1.00011 0.92452 1.09220 1.20889 0.94428 0.97047 0.97174 1.20798 0.93885 0.97910 1.04156 1.20379 0.96739 0.92737 0.97415 1.20947 0.87436 0.92509 0.90188 0.86339 1.86672 1.75963 1.18479 1.54421 1.22581 0.90391 1.00488 0.96134 1.60456 1.04326 1.58064 1.08668 1.22164 0.97241 0.98534 0.88494 1.21196 0.91020 0.97182 1.00721 0.92781 1.21591 1.00921 0.96115 0.99413 1.19124 0.95590 0.96255 0.90086 1.21245 0.91872 1.45805 0.96042 0.92532 1.25031 0.98350 0.95642 0.95639 1.69967 1.35333 1.47703 1.00747 0.86619 0.86044 0.77723 0.77767 1.20720 1.21360 1.19904 1.20270 0.91392 0.98259 1.05863 0.88155 0.92666 0.92616 0.85524 0.85652 0.86006 0.78183 0.95171 0.90154 0.83770 0.95858 0.91613 0.92775 0.94196 0.93860 0.96582 0.96970 0.93134 0.84790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.07 10.50 -19.40 -0.20 -3.28 16 3 C 0.13 1.30 6.69 -39.22 -0.26 1.04 16 4 C -0.21 -1.81 9.04 -39.43 -0.36 -2.16 16 5 C -0.08 -0.64 10.04 -39.61 -0.40 -1.03 16 6 C -0.15 -1.33 9.32 -39.56 -0.37 -1.70 16 7 C -0.07 -0.73 4.97 -104.65 -0.52 -1.25 16 8 C 0.15 1.59 3.45 -27.88 -0.10 1.50 16 9 H 0.12 1.35 8.00 -51.93 -0.42 0.94 16 10 O -0.55 -5.96 12.71 -35.23 -0.45 -6.40 16 11 C 0.03 0.41 5.34 -3.83 -0.02 0.39 16 12 N -0.68 -10.00 5.95 -113.77 -0.68 -10.68 16 13 C 0.06 1.12 5.07 -3.82 -0.02 1.10 16 14 C -0.08 -1.71 2.48 -90.62 -0.22 -1.93 16 15 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 16 C -0.12 -2.45 8.89 37.16 0.33 -2.12 16 17 C 0.03 0.70 4.45 -27.89 -0.12 0.58 16 18 C -0.51 -14.49 8.41 -34.44 -0.29 -14.78 16 19 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 20 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 21 N -0.90 -27.25 13.29 55.43 0.74 -26.51 16 22 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.14 -1.47 9.61 -39.43 -0.38 -1.85 16 27 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.25 7.66 -51.93 -0.40 -0.15 16 29 H 0.06 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.13 0.80 6.30 -52.49 -0.33 0.47 16 31 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.12 0.85 6.77 -52.48 -0.36 0.50 16 33 H 0.37 2.83 7.49 45.56 0.34 3.17 16 34 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.34 4.96 8.29 -39.29 -0.33 4.64 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 40 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.13 1.33 8.04 -52.48 -0.42 0.91 16 LS Contribution 367.94 15.07 5.54 5.54 Total: -1.00 -32.33 367.94 -8.70 -41.03 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.80 Total: 3.00 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -1.83 Total: -19.62 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.06 Total: -37.19 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.65 Total: -9.68 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.33 -8.70 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877036551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.733 kcal (2) G-P(sol) polarization free energy of solvation -32.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds