Wall clock time and date at job start Fri Apr 10 2020 20:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52988 * 109.47407 * 2 1 4 4 H 1.08999 * 109.47527 * 54.78589 * 3 2 1 5 5 C 1.52998 * 109.47526 * 294.78571 * 3 2 1 6 6 C 1.53004 * 109.47364 * 174.78569 * 3 2 1 7 7 H 1.08998 * 109.47398 * 174.49811 * 6 3 2 8 8 C 1.52998 * 109.46680 * 54.49492 * 6 3 2 9 9 N 1.46502 * 109.46953 * 180.02562 * 8 6 3 10 10 C 1.39676 * 120.00305 * 180.02562 * 9 8 6 11 11 C 1.39004 * 120.03458 * 359.97332 * 10 9 8 12 12 C 1.38155 * 120.05888 * 180.02562 * 11 10 9 13 13 C 1.38176 * 120.14201 * 359.72787 * 12 11 10 14 14 C 1.38923 * 120.07652 * 0.54697 * 13 12 11 15 15 O 1.35752 * 120.02695 * 179.72690 * 14 13 12 16 16 C 1.34826 * 116.99451 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00469 * 4.87821 * 16 15 14 18 18 C 1.38658 * 119.99797 * 184.87607 * 16 15 14 19 19 N 1.31563 * 119.99840 * 179.97438 * 18 16 15 20 20 Si 1.86798 * 119.99970 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47206 * 89.99728 * 20 18 16 22 22 H 1.48495 * 109.47004 * 210.00173 * 20 18 16 23 23 H 1.48507 * 109.46926 * 329.99952 * 20 18 16 24 24 C 1.38749 * 120.03968 * 179.97438 * 10 9 8 25 25 O 1.42900 * 109.46940 * 294.49862 * 6 3 2 26 26 C 1.42900 * 113.99825 * 267.30535 * 25 6 3 27 27 H 1.08998 * 109.47723 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47066 * 300.00026 * 1 2 3 29 29 H 1.09000 * 109.47103 * 59.99584 * 1 2 3 30 30 H 1.09001 * 109.46607 * 239.99380 * 2 1 3 31 31 H 1.08997 * 109.46598 * 120.00430 * 2 1 3 32 32 H 1.08998 * 109.47209 * 300.00272 * 5 3 2 33 33 H 1.09008 * 109.47098 * 59.99682 * 5 3 2 34 34 H 1.08994 * 109.47587 * 179.97438 * 5 3 2 35 35 H 1.08997 * 109.47353 * 60.00361 * 8 6 3 36 36 H 1.09006 * 109.47400 * 299.99974 * 8 6 3 37 37 H 0.97008 * 119.99781 * 359.97438 * 9 8 6 38 38 H 1.07994 * 119.97203 * 0.02562 * 11 10 9 39 39 H 1.07996 * 119.92989 * 179.97438 * 12 11 10 40 40 H 1.07997 * 119.96380 * 180.29638 * 13 12 11 41 41 H 0.96997 * 119.99565 * 179.97438 * 19 18 16 42 42 H 1.07992 * 120.07170 * 359.95765 * 24 10 9 43 43 H 1.08997 * 109.47302 * 304.82139 * 26 25 6 44 44 H 1.09010 * 109.47004 * 64.81538 * 26 25 6 45 45 H 1.09001 * 109.47454 * 184.81195 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6026 1.9825 0.8396 5 6 1.6400 2.1249 -1.3096 6 6 3.5645 1.4443 0.1311 7 1 3.9363 2.4642 0.0331 8 6 4.1720 0.5720 -0.9693 9 7 5.6316 0.5734 -0.8434 10 6 6.4109 -0.1574 -1.7432 11 6 5.8023 -0.8867 -2.7580 12 6 6.5726 -1.6101 -3.6480 13 6 7.9498 -1.6067 -3.5358 14 6 8.5638 -0.8845 -2.5203 15 8 9.9167 -0.8863 -2.4078 16 6 10.4479 -0.1652 -1.3999 17 1 9.8014 0.3154 -0.6805 18 6 11.8242 -0.0406 -1.2871 19 7 12.3426 0.6634 -0.3040 20 14 12.9424 -0.8724 -2.5310 21 1 13.2005 0.0544 -3.6621 22 1 14.2284 -1.2290 -1.8797 23 1 12.2870 -2.1040 -3.0399 24 6 7.7934 -0.1562 -1.6250 25 8 3.9332 0.9237 1.4098 26 6 4.0977 1.9224 2.4185 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 2.0775 1.5848 -2.1492 33 1 0.5539 2.1235 -1.4030 34 1 2.0030 3.1526 -1.3094 35 1 3.8907 0.9691 -1.9446 36 1 3.8002 -0.4480 -0.8713 37 1 6.0569 1.0825 -0.1356 38 1 4.7263 -0.8878 -2.8509 39 1 6.0975 -2.1764 -4.4354 40 1 8.5494 -2.1694 -4.2360 41 1 13.3054 0.7503 -0.2249 42 1 8.2687 0.4101 -0.8379 43 1 4.8188 2.6660 2.0794 44 1 3.1399 2.4062 2.6104 45 1 4.4596 1.4568 3.3352 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877170017.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:06:13 Heat of formation + Delta-G solvation = -58.906184 kcal Electronic energy + Delta-G solvation = -23552.933006 eV Core-core repulsion = 20149.911203 eV Total energy + Delta-G solvation = -3403.021803 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.56893 -38.91194 -36.95019 -35.93212 -34.39808 -32.26513 -30.96517 -29.51261 -28.74293 -27.50478 -26.02630 -25.11442 -24.65980 -23.07066 -21.64951 -20.56527 -19.52274 -17.81357 -17.47175 -16.85011 -16.18310 -15.77442 -15.21803 -15.12893 -14.72267 -14.32560 -14.20475 -13.94941 -13.69832 -13.66337 -13.46912 -13.25055 -12.94629 -12.70061 -12.32879 -12.16042 -12.09527 -12.02232 -11.70551 -11.61742 -11.34048 -11.22782 -10.85205 -10.79146 -10.73884 -10.60587 -10.44281 -10.15760 -9.66875 -9.39229 -9.33655 -8.76464 -7.40065 -6.76887 -6.34406 -4.00776 2.35857 2.53484 3.27319 3.30766 3.46478 3.55879 3.78909 4.30540 4.41298 4.62828 4.69158 4.70861 4.96056 5.00535 5.01011 5.13962 5.18615 5.20527 5.24289 5.29192 5.31741 5.46257 5.51468 5.60245 5.67243 5.68927 5.70414 5.82406 5.86490 5.90893 5.97993 6.12690 6.17951 6.20416 6.37895 6.57313 6.63381 7.01419 7.04305 7.28599 7.33908 7.59115 7.87189 7.99048 8.12450 8.26532 9.01986 9.67258 10.73658 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.022246 B = 0.003326 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.367408 B = 8416.504456 C = 9357.007889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.107 4.107 4 H 0.073 0.927 5 C -0.153 4.153 6 C 0.081 3.919 7 H 0.066 0.934 8 C 0.132 3.868 9 N -0.748 5.748 10 C 0.251 3.749 11 C -0.274 4.274 12 C -0.040 4.040 13 C -0.239 4.239 14 C 0.196 3.804 15 O -0.219 6.219 16 C -0.385 4.385 17 H 0.105 0.895 18 C 0.062 3.938 19 N -0.884 5.884 20 Si 0.905 3.095 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.259 1.259 24 C -0.291 4.291 25 O -0.374 6.374 26 C 0.029 3.971 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.104 0.896 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.278 0.722 42 H 0.130 0.870 43 H 0.043 0.957 44 H 0.038 0.962 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.798 2.520 0.783 21.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.210 4.210 6 C 0.023 3.977 7 H 0.084 0.916 8 C 0.007 3.993 9 N -0.379 5.379 10 C 0.149 3.851 11 C -0.296 4.296 12 C -0.059 4.059 13 C -0.260 4.260 14 C 0.143 3.857 15 O -0.123 6.123 16 C -0.461 4.461 17 H 0.123 0.877 18 C -0.141 4.141 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.209 1.209 23 H -0.183 1.183 24 C -0.315 4.315 25 O -0.293 6.293 26 C -0.067 4.067 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.231 0.769 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.088 0.912 42 H 0.147 0.853 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -21.581 2.264 0.744 21.712 hybrid contribution 0.645 0.403 0.066 0.764 sum -20.935 2.667 0.811 21.120 Atomic orbital electron populations 1.21828 0.96120 1.01517 1.01529 1.21577 0.95431 0.95769 1.02931 1.21569 0.94727 0.97503 0.98823 0.90867 1.21941 1.01761 1.00363 0.96916 1.22449 0.93832 0.97363 0.84069 0.91634 1.21441 0.81351 1.00028 0.96434 1.44423 1.03974 1.55244 1.34266 1.17484 0.89754 0.89460 0.88383 1.20115 0.98284 1.09550 1.01701 1.20362 0.92580 0.96225 0.96765 1.20007 0.94173 1.09245 1.02571 1.18801 0.83252 0.91598 0.92033 1.83586 1.16081 1.63470 1.49194 1.20760 0.92070 1.29190 1.04078 0.87741 1.24461 0.96196 0.96210 0.97225 1.69653 1.13105 1.38853 1.30649 0.86188 0.79150 0.80873 0.80737 1.19981 1.20911 1.18300 1.20606 0.91538 1.12180 1.07192 1.87988 1.89648 1.33037 1.18601 1.22822 0.99621 0.92298 0.91987 0.92835 0.93079 0.92656 0.91543 0.91078 0.91933 0.92006 0.92653 0.91377 0.91572 0.76950 0.87785 0.87090 0.86990 0.91214 0.85250 0.93863 0.94369 0.89559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.12 -1.05 4.67 -26.73 -0.12 -1.17 16 3 C -0.11 -0.91 2.39 -90.62 -0.22 -1.12 16 4 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 5 C -0.15 -1.13 8.72 37.16 0.32 -0.81 16 6 C 0.08 0.84 1.97 -26.73 -0.05 0.79 16 7 H 0.07 0.66 7.68 -51.93 -0.40 0.26 16 8 C 0.13 1.64 3.87 -4.04 -0.02 1.62 16 9 N -0.75 -11.84 5.62 -58.65 -0.33 -12.17 16 10 C 0.25 4.82 6.65 -83.81 -0.56 4.26 16 11 C -0.27 -4.85 9.31 -39.33 -0.37 -5.22 16 12 C -0.04 -0.72 10.03 -39.63 -0.40 -1.12 16 13 C -0.24 -5.00 9.99 -39.35 -0.39 -5.40 16 14 C 0.20 4.74 6.65 -39.13 -0.26 4.48 16 15 O -0.22 -5.97 8.58 0.05 0.00 -5.97 16 16 C -0.39 -11.15 9.94 30.89 0.31 -10.84 16 17 H 0.11 3.10 5.43 -52.48 -0.29 2.81 16 18 C 0.06 1.76 5.49 -17.51 -0.10 1.67 16 19 N -0.88 -26.01 13.96 55.48 0.77 -25.24 16 20 Si 0.90 22.18 28.62 -169.99 -4.86 17.31 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.26 -6.38 7.11 56.52 0.40 -5.97 16 24 C -0.29 -6.60 9.01 -39.20 -0.35 -6.95 16 25 O -0.37 -4.45 9.56 -35.23 -0.34 -4.79 16 26 C 0.03 0.27 10.88 101.05 1.10 1.37 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.05 0.37 6.57 -51.93 -0.34 0.03 16 30 H 0.07 0.60 6.66 -51.93 -0.35 0.26 16 31 H 0.07 0.72 7.71 -51.93 -0.40 0.32 16 32 H 0.06 0.48 6.58 -51.93 -0.34 0.14 16 33 H 0.06 0.40 6.57 -51.92 -0.34 0.06 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.79 6.39 -51.93 -0.33 0.46 16 36 H 0.07 0.86 6.27 -51.93 -0.33 0.53 16 37 H 0.40 6.20 8.36 -40.82 -0.34 5.86 16 38 H 0.10 1.58 6.72 -52.49 -0.35 1.22 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.11 2.20 8.06 -52.49 -0.42 1.77 16 41 H 0.28 7.55 8.31 -40.82 -0.34 7.22 16 42 H 0.13 3.09 5.63 -52.49 -0.30 2.80 16 43 H 0.04 0.38 7.98 -51.93 -0.41 -0.03 16 44 H 0.04 0.29 8.08 -51.92 -0.42 -0.13 16 45 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 358.60 15.07 5.40 5.40 Total: -1.00 -30.82 358.60 -7.12 -37.94 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -7.03 Total: 6.69 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -0.74 Total: -19.20 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.44 Total: -37.40 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.34 Total: -10.75 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.86 Total: 17.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.82 -7.12 -37.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877170017.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.962 kcal (2) G-P(sol) polarization free energy of solvation -30.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds