Wall clock time and date at job start Fri Apr 10 2020 20:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42895 * 113.99919 * 2 1 4 4 C 1.50708 * 109.47103 * 180.02562 * 3 2 1 5 5 C 1.38132 * 119.98423 * 359.97438 * 4 3 2 6 6 C 1.38847 * 119.97697 * 180.02562 * 5 4 3 7 7 N 1.39933 * 120.02068 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00123 * 180.02562 * 7 6 5 9 9 C 1.53005 * 109.47158 * 180.02562 * 8 7 6 10 10 H 1.08997 * 109.46857 * 304.99897 * 9 8 7 11 11 C 1.52999 * 109.47248 * 64.99779 * 9 8 7 12 12 C 1.53000 * 109.46974 * 185.00065 * 9 8 7 13 13 C 1.50700 * 109.47142 * 174.99926 * 12 9 8 14 14 H 1.08008 * 119.99948 * 359.97438 * 13 12 9 15 15 C 1.37877 * 120.00428 * 180.02562 * 13 12 9 16 16 N 1.31507 * 120.00148 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 119.99754 * 359.97438 * 15 13 12 18 18 H 1.48494 * 109.46904 * 90.00099 * 17 15 13 19 19 H 1.48501 * 109.47100 * 210.00358 * 17 15 13 20 20 H 1.48501 * 109.47208 * 330.00395 * 17 15 13 21 21 C 1.38886 * 119.95993 * 359.97438 * 6 5 4 22 22 C 1.38087 * 119.98217 * 0.28288 * 21 6 5 23 23 C 1.38672 * 119.99090 * 180.02562 * 4 3 2 24 24 O 1.36000 * 119.98246 * 0.02562 * 23 4 3 25 25 C 1.42895 * 116.99963 * 180.02562 * 24 23 4 26 26 H 1.08997 * 109.47329 * 60.00136 * 1 2 3 27 27 H 1.09003 * 109.47671 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47267 * 300.00580 * 1 2 3 29 29 H 1.08996 * 109.47833 * 60.00070 * 3 2 1 30 30 H 1.08995 * 109.47151 * 299.99399 * 3 2 1 31 31 H 1.08000 * 120.01389 * 0.02671 * 5 4 3 32 32 H 0.97000 * 119.99885 * 0.03040 * 7 6 5 33 33 H 1.09002 * 109.47378 * 299.99915 * 8 7 6 34 34 H 1.08994 * 109.47561 * 60.00217 * 8 7 6 35 35 H 1.08999 * 109.46923 * 180.02562 * 11 9 8 36 36 H 1.08995 * 109.47489 * 300.00293 * 11 9 8 37 37 H 1.08997 * 109.47096 * 60.00264 * 11 9 8 38 38 H 1.08996 * 109.46958 * 294.99281 * 12 9 8 39 39 H 1.08999 * 109.47399 * 55.00082 * 12 9 8 40 40 H 0.97006 * 120.00147 * 179.97438 * 16 15 13 41 41 H 1.08002 * 120.00539 * 179.97438 * 21 6 5 42 42 H 1.07998 * 119.99366 * 179.72368 * 22 21 6 43 43 H 1.09006 * 109.47551 * 60.00346 * 25 24 23 44 44 H 1.09004 * 109.47298 * 180.02562 * 25 24 23 45 45 H 1.09003 * 109.47672 * 300.00167 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 -0.0006 5 6 4.1063 -0.0608 -0.0006 6 6 5.4904 -0.1702 -0.0006 7 7 6.0928 -1.4332 0.0000 8 6 7.5533 -1.5482 0.0005 9 6 7.9485 -3.0263 0.0005 10 1 7.4726 -3.5296 0.8420 11 6 7.4918 -3.6764 -1.3071 12 6 9.4685 -3.1478 0.1267 13 6 9.8477 -4.6011 0.2503 14 1 9.0812 -5.3620 0.2401 15 6 11.1731 -4.9594 0.3772 16 7 11.5039 -6.2275 0.4855 17 14 12.4987 -3.6434 0.3954 18 1 12.7409 -3.2042 1.7931 19 1 13.7535 -4.1968 -0.1742 20 1 12.0554 -2.4829 -0.4182 21 6 6.2767 0.9746 -0.0013 22 6 5.6814 2.2206 0.0040 23 6 4.2984 2.3290 -0.0002 24 8 3.7129 3.5565 0.0013 25 6 4.5828 4.6902 0.0011 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6886 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 3.4941 -0.9505 -0.0005 32 1 5.5434 -2.2326 0.0000 33 1 7.9562 -1.0648 -0.8895 34 1 7.9556 -1.0643 0.8904 35 1 7.7730 -4.7295 -1.3068 36 1 6.4090 -3.5898 -1.3971 37 1 7.9677 -3.1731 -2.1486 38 1 9.9417 -2.7229 -0.7584 39 1 9.8038 -2.6083 1.0125 40 1 12.4364 -6.4796 0.5744 41 1 7.3534 0.8904 -0.0009 42 1 6.2927 3.1109 0.0080 43 1 5.2107 4.6663 -0.8897 44 1 3.9888 5.6041 0.0029 45 1 5.2128 4.6651 0.8903 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877702362.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:18 Heat of formation + Delta-G solvation = -69.024858 kcal Electronic energy + Delta-G solvation = -23006.797186 eV Core-core repulsion = 19603.336605 eV Total energy + Delta-G solvation = -3403.460582 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.28227 -38.20955 -37.91251 -36.24750 -33.76124 -32.14387 -31.72673 -29.14838 -27.85111 -27.44751 -26.70310 -25.63866 -25.37430 -22.57525 -21.98344 -20.60648 -19.32345 -18.03269 -17.16563 -16.66943 -16.62908 -16.18912 -15.60851 -15.60440 -15.07546 -14.83910 -14.59993 -14.25478 -14.08276 -13.39295 -13.18195 -13.13008 -12.80221 -12.73157 -12.39562 -12.22697 -12.11092 -11.97157 -11.84766 -11.38289 -11.33312 -11.04716 -10.81583 -10.73442 -10.45252 -10.06595 -9.99776 -9.75146 -9.61891 -9.32942 -9.13051 -8.71114 -8.55237 -6.94162 -6.05522 -4.03325 1.36991 1.69812 3.27592 3.29450 3.37242 3.40030 3.54133 3.74953 3.87210 4.43745 4.74086 4.86586 4.94668 5.00148 5.06455 5.08867 5.23385 5.26535 5.27782 5.33172 5.37015 5.40921 5.48076 5.49608 5.60351 5.67247 5.82369 5.97698 6.10051 6.17202 6.30829 6.33979 6.41280 6.45614 6.64445 6.74939 6.85046 7.01016 7.01846 7.19074 7.33734 7.38817 7.60689 7.77831 8.01128 8.52103 8.99116 9.56781 11.07751 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.020594 B = 0.002932 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.311812 B = 9546.276830 C =10751.551393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.387 6.387 3 C 0.116 3.884 4 C -0.073 4.073 5 C -0.142 4.142 6 C 0.195 3.805 7 N -0.742 5.742 8 C 0.126 3.874 9 C -0.087 4.087 10 H 0.068 0.932 11 C -0.133 4.133 12 C -0.006 4.006 13 C -0.516 4.516 14 H 0.074 0.926 15 C 0.066 3.934 16 N -0.904 5.904 17 Si 0.878 3.122 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.266 1.266 21 C -0.164 4.164 22 C -0.153 4.153 23 C 0.060 3.940 24 O -0.324 6.324 25 C 0.031 3.969 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.399 0.601 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.034 0.966 37 H 0.045 0.955 38 H 0.018 0.982 39 H 0.012 0.988 40 H 0.263 0.737 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.052 0.948 44 H 0.094 0.906 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.682 19.886 -1.601 27.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C 0.040 3.960 4 C -0.075 4.075 5 C -0.164 4.164 6 C 0.091 3.909 7 N -0.371 5.371 8 C 0.002 3.998 9 C -0.106 4.106 10 H 0.086 0.914 11 C -0.191 4.191 12 C -0.044 4.044 13 C -0.554 4.554 14 H 0.092 0.908 15 C -0.135 4.135 16 N -0.543 5.543 17 Si 0.706 3.294 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.190 1.190 21 C -0.187 4.187 22 C -0.173 4.173 23 C 0.014 3.986 24 O -0.239 6.239 25 C -0.064 4.064 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.234 0.766 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.053 0.947 37 H 0.064 0.936 38 H 0.036 0.964 39 H 0.031 0.969 40 H 0.072 0.928 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.070 0.930 44 H 0.112 0.888 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.391 19.646 -1.586 26.958 hybrid contribution 0.818 0.647 0.060 1.044 sum -17.573 20.293 -1.526 26.888 Atomic orbital electron populations 1.22727 0.80971 1.02797 0.99909 1.87861 1.19581 1.27703 1.95470 1.20997 0.89939 0.84391 1.00712 1.18602 0.93419 0.90799 1.04642 1.20240 0.92223 0.97179 1.06807 1.17844 0.91477 0.86256 0.95356 1.44899 1.06479 1.04104 1.81647 1.21598 0.79164 0.98814 1.00254 1.21234 0.99339 0.91672 0.98352 0.91366 1.21722 0.98181 1.02343 0.96812 1.19566 0.90286 0.98215 0.96342 1.21094 0.93379 0.90921 1.49974 0.90812 1.25022 0.98683 0.95149 0.94667 1.69908 1.17858 1.15841 1.50660 0.86805 0.81439 0.82558 0.78634 1.20335 1.21442 1.19015 1.20500 0.99677 0.90688 1.07795 1.20866 0.92835 0.98119 1.05442 1.18321 0.91014 0.84043 1.05243 1.85990 1.35498 1.12272 1.90117 1.22943 0.95186 0.87179 1.01142 0.94105 0.89547 0.94104 0.92063 0.92080 0.84659 0.76582 0.92820 0.92799 0.91298 0.94736 0.93573 0.96392 0.96946 0.92752 0.85721 0.85706 0.92986 0.88789 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.41 9.18 -35.23 -0.32 -4.73 16 3 C 0.12 1.28 5.79 36.01 0.21 1.49 16 4 C -0.07 -0.95 5.89 -104.50 -0.62 -1.57 16 5 C -0.14 -1.94 9.22 -39.40 -0.36 -2.30 16 6 C 0.19 2.78 6.66 -83.69 -0.56 2.22 16 7 N -0.74 -10.72 5.47 -58.59 -0.32 -11.04 16 8 C 0.13 2.00 4.30 -4.04 -0.02 1.98 16 9 C -0.09 -1.63 2.37 -90.62 -0.22 -1.85 16 10 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 11 C -0.13 -2.39 8.88 37.16 0.33 -2.06 16 12 C -0.01 -0.14 3.52 -27.88 -0.10 -0.24 16 13 C -0.52 -14.26 8.96 -34.44 -0.31 -14.57 16 14 H 0.07 2.19 7.30 -52.48 -0.38 1.80 16 15 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 16 N -0.90 -27.62 13.96 55.43 0.77 -26.85 16 17 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 21 C -0.16 -2.22 9.31 -39.40 -0.37 -2.59 16 22 C -0.15 -1.87 9.03 -39.46 -0.36 -2.23 16 23 C 0.06 0.75 6.66 -39.24 -0.26 0.49 16 24 O -0.32 -3.61 9.92 -19.74 -0.20 -3.81 16 25 C 0.03 0.23 9.81 101.05 0.99 1.22 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.14 1.80 7.00 -52.49 -0.37 1.44 16 32 H 0.40 5.44 7.67 -40.82 -0.31 5.13 16 33 H 0.05 0.85 7.95 -51.93 -0.41 0.44 16 34 H 0.05 0.86 7.95 -51.93 -0.41 0.45 16 35 H 0.07 1.38 6.95 -51.93 -0.36 1.02 16 36 H 0.03 0.52 7.18 -51.93 -0.37 0.15 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 39 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 41 H 0.12 1.63 6.73 -52.49 -0.35 1.28 16 42 H 0.13 1.23 6.29 -52.49 -0.33 0.90 16 43 H 0.05 0.35 7.67 -51.93 -0.40 -0.04 16 44 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.36 7.65 -51.93 -0.40 -0.04 16 LS Contribution 362.19 15.07 5.46 5.46 Total: -1.00 -31.21 362.19 -7.31 -38.52 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.42 Total: 2.49 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -0.61 Total: -16.84 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.45 Total: -37.89 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: -0.52 Total: -8.54 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.21 -7.31 -38.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877702362.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.510 kcal (2) G-P(sol) polarization free energy of solvation -31.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds