Wall clock time and date at job start Fri Apr 10 2020 20:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50703 * 120.00044 * 2 1 4 4 N 1.46502 * 109.46912 * 125.04960 * 3 2 1 5 5 C 1.46496 * 119.99938 * 264.96173 * 4 3 2 6 6 C 1.50706 * 109.46906 * 264.26859 * 5 4 3 7 7 H 1.07993 * 120.00243 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99855 * 179.97438 * 6 5 4 9 9 N 1.31517 * 120.00089 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99906 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47397 * 60.00376 * 10 8 6 12 12 H 1.48505 * 109.47092 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.47367 * 299.99896 * 10 8 6 14 14 C 1.34780 * 119.99645 * 84.96681 * 4 3 2 15 15 O 1.21275 * 120.00063 * 4.17274 * 14 4 3 16 16 C 1.50702 * 119.99398 * 184.17800 * 14 4 3 17 17 H 1.08994 * 109.63915 * 26.59699 * 16 14 4 18 18 C 1.53399 * 109.70112 * 266.26793 * 16 14 4 19 19 C 1.53049 * 109.46910 * 181.59194 * 18 16 14 20 20 O 1.43043 * 109.44457 * 59.32453 * 19 18 16 21 21 C 1.42585 * 113.84844 * 301.27330 * 20 19 18 22 22 C 1.53390 * 113.62599 * 188.22318 * 21 20 19 23 23 C 1.53851 * 86.98289 * 89.43430 * 22 21 20 24 24 C 1.53423 * 113.56312 * 286.14768 * 21 20 19 25 25 C 1.52814 * 112.93530 * 57.10798 * 21 20 19 26 26 H 1.07996 * 119.99985 * 0.02562 * 1 2 3 27 27 H 1.08001 * 120.00089 * 179.97438 * 1 2 3 28 28 H 1.08007 * 120.00030 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47100 * 5.05065 * 3 2 1 30 30 H 1.08995 * 109.46930 * 245.04645 * 3 2 1 31 31 H 1.08997 * 109.47464 * 24.26711 * 5 4 3 32 32 H 1.09001 * 109.47094 * 144.27246 * 5 4 3 33 33 H 0.97004 * 120.00095 * 180.02562 * 9 8 6 34 34 H 1.09001 * 109.44996 * 61.59556 * 18 16 14 35 35 H 1.08993 * 109.46672 * 301.59849 * 18 16 14 36 36 H 1.09007 * 109.47118 * 299.33301 * 19 18 16 37 37 H 1.08997 * 109.47949 * 179.32298 * 19 18 16 38 38 H 1.08994 * 113.63099 * 203.95832 * 22 21 20 39 39 H 1.09004 * 113.62769 * 334.91080 * 22 21 20 40 40 H 1.08999 * 113.60149 * 270.60186 * 23 22 21 41 41 H 1.08993 * 113.68050 * 139.74064 * 23 22 21 42 42 H 1.09005 * 113.63258 * 25.02703 * 24 21 20 43 43 H 1.08996 * 113.63413 * 155.89471 * 24 21 20 44 44 H 1.08999 * 109.56293 * 65.88871 * 25 21 20 45 45 H 1.09001 * 109.56270 * 186.11512 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9946 1.3314 1.1308 5 6 2.5982 1.9634 2.3915 6 6 3.1071 3.3816 2.4242 7 1 3.6691 3.7730 1.5892 8 6 2.8541 4.1797 3.5197 9 7 2.1692 3.7032 4.5363 10 14 3.4842 5.9377 3.5598 11 1 2.9063 6.6969 2.4220 12 1 3.0825 6.5785 4.8379 13 1 4.9654 5.9354 3.4521 14 6 4.2159 0.7741 1.0110 15 8 4.5727 0.3183 -0.0547 16 6 5.1381 0.7172 2.2016 17 1 4.5509 0.7129 3.1199 18 6 6.0688 1.9365 2.1935 19 6 7.0292 1.8531 3.3823 20 8 7.7971 0.6498 3.2905 21 6 7.0079 -0.5376 3.2700 22 6 7.8335 -1.8263 3.3730 23 6 7.6885 -1.7007 4.8995 24 6 6.4042 -0.8964 4.6340 25 6 5.9894 -0.5560 2.1309 26 1 -0.5400 0.9353 -0.0004 27 1 -0.5400 -0.9353 -0.0004 28 1 1.8500 -0.9354 0.0004 29 1 1.3587 2.1316 0.0905 30 1 2.6206 1.4030 -0.9317 31 1 1.5111 1.9656 2.4708 32 1 3.0224 1.4059 3.2266 33 1 1.9910 4.2648 5.3069 34 1 5.4747 2.8472 2.2695 35 1 6.6399 1.9515 1.2653 36 1 6.4585 1.8501 4.3110 37 1 7.6985 2.7133 3.3699 38 1 7.3326 -2.7004 2.9570 39 1 8.8594 -1.7172 3.0211 40 1 8.4810 -1.1159 5.3665 41 1 7.5120 -2.6516 5.4021 42 1 6.2805 -0.0395 5.2962 43 1 5.5074 -1.5123 4.5665 44 1 6.5117 -0.5933 1.1749 45 1 5.3467 -1.4307 2.2301 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897823885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:27 Heat of formation + Delta-G solvation = -48.159725 kcal Electronic energy + Delta-G solvation = -25168.898933 eV Core-core repulsion = 21766.343132 eV Total energy + Delta-G solvation = -3402.555802 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.47241 -38.95246 -35.94905 -35.47526 -33.83246 -32.88730 -32.11628 -29.37174 -27.60827 -26.36939 -25.67474 -24.34317 -23.10040 -22.83935 -21.00940 -19.64679 -18.77482 -18.10331 -16.70640 -16.37535 -15.96129 -15.79724 -15.37575 -14.75875 -14.61534 -14.47003 -14.19773 -13.78924 -13.55619 -13.37953 -12.82596 -12.58339 -12.48375 -12.22711 -12.14853 -11.70471 -11.49878 -11.26822 -11.25622 -11.01514 -10.95897 -10.87501 -10.71006 -10.52346 -10.50430 -10.23967 -10.14799 -9.80914 -9.68340 -9.27192 -9.12197 -8.73905 -8.55285 -7.76905 -6.23970 -4.30983 2.53088 3.18971 3.25172 3.26597 3.38850 3.89380 3.99894 4.28163 4.68554 4.76092 4.93928 5.03538 5.08471 5.22921 5.29264 5.35551 5.48552 5.52135 5.53806 5.75696 5.76416 5.78078 5.82488 5.90859 5.97895 6.03535 6.07594 6.15935 6.19912 6.24337 6.27092 6.30354 6.43756 6.46474 6.64574 6.74245 6.80488 6.89018 7.02370 7.16945 7.51538 7.57927 7.71281 8.00471 8.29856 8.73841 9.00819 9.36008 10.82474 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.010999 B = 0.006846 C = 0.004862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.100262 B = 4088.740627 C = 5757.311398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.154 4.154 3 C 0.143 3.857 4 N -0.592 5.592 5 C 0.238 3.762 6 C -0.536 4.536 7 H 0.062 0.938 8 C 0.068 3.932 9 N -0.888 5.888 10 Si 0.892 3.108 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.524 3.476 15 O -0.574 6.574 16 C -0.097 4.097 17 H 0.099 0.901 18 C -0.145 4.145 19 C 0.065 3.935 20 O -0.362 6.362 21 C 0.098 3.902 22 C -0.125 4.125 23 C -0.134 4.134 24 C -0.165 4.165 25 C -0.116 4.116 26 H 0.097 0.903 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.266 0.734 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.916 -7.723 -0.527 9.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.173 4.173 3 C 0.020 3.980 4 N -0.322 5.322 5 C 0.118 3.882 6 C -0.575 4.575 7 H 0.080 0.920 8 C -0.136 4.136 9 N -0.526 5.526 10 Si 0.719 3.281 11 H -0.201 1.201 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.313 3.687 15 O -0.455 6.455 16 C -0.119 4.119 17 H 0.117 0.883 18 C -0.183 4.183 19 C -0.011 4.011 20 O -0.281 6.281 21 C 0.058 3.942 22 C -0.162 4.162 23 C -0.172 4.172 24 C -0.203 4.203 25 C -0.154 4.154 26 H 0.115 0.885 27 H 0.111 0.889 28 H 0.121 0.879 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.202 -7.879 -0.880 9.482 hybrid contribution -0.247 1.153 0.227 1.201 sum 4.955 -6.726 -0.653 8.379 Atomic orbital electron populations 1.23759 0.95754 1.01528 1.02150 1.23397 0.96047 0.99387 0.98479 1.20409 0.92201 0.94627 0.90803 1.48256 1.13285 1.55280 1.15374 1.19461 0.96751 0.92475 0.79471 1.21423 1.35785 0.96923 1.03361 0.92020 1.24913 0.94863 0.98491 0.95303 1.69910 1.38846 1.36949 1.06928 0.86652 0.79552 0.84439 0.77473 1.20115 1.21106 1.19892 1.20415 0.81975 0.76922 0.89401 1.90570 1.75681 1.49816 1.29467 1.21255 0.96061 0.96071 0.98465 0.88311 1.22196 0.97590 0.99624 0.98861 1.22581 0.94364 0.86349 0.97780 1.87828 1.32726 1.13241 1.94337 1.22150 0.91822 0.86312 0.93926 1.22938 1.00847 0.95788 0.96643 1.22777 0.98246 1.00052 0.96100 1.23500 0.97811 1.00882 0.98117 1.21900 0.97044 0.97128 0.99367 0.88478 0.88913 0.87866 0.89927 0.90377 0.94570 0.94442 0.92417 0.87551 0.91692 0.92545 0.88901 0.89056 0.90739 0.90040 0.91674 0.90788 0.89423 0.90250 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.77 14.32 29.02 0.42 -2.36 16 2 C -0.15 -2.54 9.81 -36.02 -0.35 -2.89 16 3 C 0.14 2.65 5.81 -5.19 -0.03 2.62 16 4 N -0.59 -12.33 2.47 -176.43 -0.44 -12.77 16 5 C 0.24 5.46 4.94 -5.19 -0.03 5.44 16 6 C -0.54 -13.20 7.55 -34.44 -0.26 -13.46 16 7 H 0.06 1.55 7.42 -52.49 -0.39 1.16 16 8 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 9 N -0.89 -23.52 13.29 55.43 0.74 -22.78 16 10 Si 0.89 19.78 29.54 -169.99 -5.02 14.75 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 14 C 0.52 10.93 6.62 -10.98 -0.07 10.85 16 15 O -0.57 -13.00 15.78 5.56 0.09 -12.91 16 16 C -0.10 -1.81 1.98 -91.40 -0.18 -1.99 16 17 H 0.10 1.92 5.83 -51.93 -0.30 1.62 16 18 C -0.14 -2.65 5.37 -26.50 -0.14 -2.79 16 19 C 0.07 1.07 6.73 37.18 0.25 1.32 16 20 O -0.36 -5.92 10.45 -35.23 -0.37 -6.29 16 21 C 0.10 1.45 1.03 -90.30 -0.09 1.36 16 22 C -0.12 -1.53 7.47 -26.09 -0.19 -1.73 16 23 C -0.13 -1.56 8.02 -25.85 -0.21 -1.77 16 24 C -0.17 -2.24 7.11 -26.07 -0.19 -2.42 16 25 C -0.12 -1.91 4.27 -26.66 -0.11 -2.02 16 26 H 0.10 1.33 7.84 -52.49 -0.41 0.92 16 27 H 0.09 1.15 8.06 -52.49 -0.42 0.72 16 28 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.08 1.49 7.68 -51.93 -0.40 1.10 16 30 H 0.08 1.47 7.52 -51.93 -0.39 1.08 16 31 H 0.04 0.88 8.03 -51.93 -0.42 0.47 16 32 H 0.04 0.89 5.93 -51.93 -0.31 0.59 16 33 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 34 H 0.11 2.16 5.78 -51.93 -0.30 1.86 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.93 7.21 -51.92 -0.37 0.55 16 37 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.09 0.99 8.09 -51.93 -0.42 0.57 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 1.06 7.26 -51.93 -0.38 0.68 16 43 H 0.09 1.13 8.02 -51.93 -0.42 0.71 16 44 H 0.08 1.40 7.69 -51.93 -0.40 1.01 16 45 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -27.37 356.80 -8.33 -35.71 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -7.42 Total: 7.15 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: -1.29 Total: -8.24 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.30 Total: -35.55 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.28 Total: -19.20 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.02 Total: 14.75 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -27.37 -8.33 -35.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897823885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.454 kcal (2) G-P(sol) polarization free energy of solvation -27.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds