Wall clock time and date at job start Fri Apr 10 2020 20:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99808 * 2 1 4 4 H 1.48496 * 109.47491 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47561 * 300.01066 * 3 2 1 6 6 H 1.48507 * 109.46814 * 60.00587 * 3 2 1 7 7 C 1.37880 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99567 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46808 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47071 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46998 * 54.99547 * 11 10 9 13 13 N 1.46898 * 109.46780 * 294.99860 * 11 10 9 14 14 C 1.50701 * 109.46915 * 174.99798 * 11 10 9 15 15 N 1.31122 * 126.55335 * 254.99913 * 14 11 10 16 16 C 1.34494 * 105.61798 * 179.97438 * 15 14 11 17 17 C 1.50699 * 126.28886 * 179.97438 * 16 15 14 18 18 C 1.50470 * 108.87490 * 120.00063 * 17 16 15 19 19 C 1.54246 * 108.51998 * 214.92919 * 18 17 16 20 20 C 1.45537 * 112.40731 * 280.01038 * 19 18 17 21 21 C 1.54242 * 112.40484 * 61.93498 * 20 19 18 22 22 C 1.50473 * 108.52431 * 280.01487 * 21 20 19 23 23 C 1.54065 * 112.49668 * 94.15076 * 22 21 20 24 24 N 1.29942 * 107.42296 * 0.24295 * 16 15 14 25 25 O 1.21305 * 110.25340 * 359.57832 * 24 16 15 26 26 H 0.96993 * 120.00518 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47345 * 60.00289 * 9 7 2 28 28 H 1.09001 * 109.47768 * 300.00162 * 9 7 2 29 29 H 1.08994 * 109.47175 * 60.00176 * 10 9 7 30 30 H 1.08996 * 109.47068 * 299.99728 * 10 9 7 31 31 H 1.00903 * 110.99643 * 176.04459 * 13 11 10 32 32 H 1.00903 * 111.00261 * 299.99803 * 13 11 10 33 33 H 1.09001 * 108.76931 * 1.49148 * 17 16 15 34 34 H 1.09003 * 109.63195 * 95.21835 * 18 17 16 35 35 H 1.09001 * 109.62960 * 334.63878 * 18 17 16 36 36 H 1.09001 * 108.89247 * 40.76541 * 19 18 17 37 37 H 1.08997 * 108.89409 * 159.25841 * 19 18 17 38 38 H 1.09000 * 108.89458 * 182.68905 * 20 19 18 39 39 H 1.08995 * 108.89787 * 301.28165 * 20 19 18 40 40 H 1.09006 * 109.62552 * 39.72561 * 21 20 19 41 41 H 1.09001 * 109.62814 * 160.30110 * 21 20 19 42 42 H 1.08999 * 108.87754 * 214.92438 * 22 21 20 43 43 H 1.08996 * 108.87890 * 333.37233 * 22 21 20 44 44 H 1.09005 * 108.81720 * 79.14584 * 23 22 21 45 45 H 1.09004 * 108.81387 * 197.52830 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3967 -1.2123 6 1 1.8903 2.3964 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 1 0.7886 -5.0068 -0.8432 13 7 0.7284 -5.1188 1.2538 14 6 2.4552 -6.1297 -0.1251 15 7 2.6769 -6.8546 -1.1950 16 6 3.6191 -7.7461 -0.8396 17 6 4.2189 -8.8098 -1.7226 18 6 5.7029 -8.5810 -1.8209 19 6 6.1665 -8.9749 -3.2384 20 6 6.3321 -10.4130 -3.3883 21 6 5.0122 -11.1821 -3.1751 22 6 4.7706 -11.3164 -1.6960 23 6 3.8731 -10.1939 -1.1410 24 7 3.9130 -7.5255 0.4068 25 8 3.2592 -6.5975 0.8346 26 1 -0.4850 0.8399 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8721 -3.6043 0.8894 30 1 2.8721 -3.6043 -0.8905 31 1 0.1640 -5.9553 1.2510 32 1 1.3480 -5.1034 2.0500 33 1 3.7826 -8.7264 -2.7180 34 1 6.2180 -9.1961 -1.0831 35 1 5.9237 -7.5285 -1.6427 36 1 5.4278 -8.6274 -3.9606 37 1 7.1183 -8.4863 -3.4469 38 1 6.7050 -10.6228 -4.3908 39 1 7.0639 -10.7619 -2.6597 40 1 4.1898 -10.6316 -3.6320 41 1 5.0886 -12.1720 -3.6250 42 1 4.2939 -12.2773 -1.5023 43 1 5.7294 -11.2898 -1.1782 44 1 2.8344 -10.4250 -1.3774 45 1 3.9864 -10.1565 -0.0575 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573722096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:05:45 Heat of formation + Delta-G solvation = 30.599908 kcal Electronic energy + Delta-G solvation = -23503.703435 eV Core-core repulsion = 20136.855659 eV Total energy + Delta-G solvation = -3366.847776 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.47530 -39.41561 -36.71034 -35.79162 -33.37039 -32.85768 -32.59553 -30.92928 -30.26729 -26.54127 -25.76331 -25.24735 -24.16331 -23.19593 -21.58968 -20.81960 -20.22060 -19.14206 -17.88636 -17.52379 -16.28870 -16.14506 -15.95590 -15.30782 -15.12999 -14.80499 -14.35517 -14.21878 -14.03116 -13.66925 -13.37870 -12.76161 -12.66632 -12.46577 -12.39378 -12.08833 -11.76478 -11.67100 -11.37362 -11.06578 -11.01690 -10.99635 -10.92196 -10.70735 -10.69261 -10.65002 -10.57358 -10.54315 -9.95484 -9.82703 -9.36539 -9.01816 -8.82369 -8.28724 -5.95564 -3.97644 1.24291 2.30864 2.94414 3.33752 3.41380 3.45249 3.54480 4.01061 4.31980 4.36096 4.49641 4.58334 4.70418 4.75350 4.80566 4.87808 4.98554 5.02814 5.09324 5.33179 5.40018 5.42217 5.43363 5.50746 5.65920 5.67600 5.73721 5.78067 5.83346 5.85026 5.87934 5.89392 5.97706 6.06674 6.09141 6.15495 6.40441 6.56932 7.00318 7.16525 7.51097 7.74548 7.91955 8.08738 8.26830 8.45535 9.09919 9.65740 11.15449 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.002811 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.633537 B = 9957.280065 C =10584.016279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.053 0.947 9 C 0.032 3.968 10 C -0.101 4.101 11 C 0.185 3.815 12 H 0.124 0.876 13 N -0.812 5.812 14 C 0.160 3.840 15 N -0.486 5.486 16 C 0.169 3.831 17 C 0.010 3.990 18 C -0.108 4.108 19 C -0.118 4.118 20 C -0.119 4.119 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.109 4.109 24 N -0.389 5.389 25 O 0.070 5.930 26 H 0.259 0.741 27 H 0.016 0.984 28 H 0.037 0.963 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.340 0.660 32 H 0.349 0.651 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.931 -23.184 -3.811 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.071 0.929 9 C -0.006 4.006 10 C -0.140 4.140 11 C 0.070 3.930 12 H 0.142 0.858 13 N -0.341 5.341 14 C -0.064 4.064 15 N -0.219 5.219 16 C -0.104 4.104 17 C -0.010 4.010 18 C -0.147 4.147 19 C -0.155 4.155 20 C -0.156 4.156 21 C -0.159 4.159 22 C -0.152 4.152 23 C -0.148 4.148 24 N -0.098 5.098 25 O 0.014 5.986 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.163 0.837 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 8.943 -22.965 -3.972 24.963 hybrid contribution 0.910 0.247 0.179 0.960 sum 9.853 -22.718 -3.794 25.052 Atomic orbital electron populations 1.69975 1.05941 1.26383 1.50837 1.24984 0.94813 0.99086 0.95428 0.86587 0.80111 0.84039 0.77548 1.19847 1.21081 1.21032 1.21281 0.92968 0.91181 1.50604 0.92869 1.19024 0.93479 0.89615 0.98445 1.21838 0.99256 0.91710 1.01205 1.20838 0.89381 0.87406 0.95349 0.85829 1.58824 1.27086 1.45013 1.03160 1.31206 0.94233 0.98369 0.82558 1.71937 1.16218 1.07066 1.26697 1.25942 0.95020 0.98782 0.90640 1.19454 0.95494 0.89253 0.96818 1.21382 0.93505 1.01969 0.97830 1.20474 1.01960 0.96649 0.96447 1.20512 0.97634 0.95640 1.01807 1.21394 0.97927 1.00327 0.96260 1.21310 1.00051 0.97698 0.96157 1.21967 0.99953 0.92215 1.00636 1.74535 1.16400 1.05069 1.13843 1.85257 1.39427 1.34731 1.39178 0.93103 0.96569 0.94455 0.92435 0.92366 0.84757 0.83708 0.88334 0.90787 0.91622 0.91705 0.91805 0.92156 0.92095 0.91389 0.91784 0.91923 0.91787 0.91748 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 10 C -0.10 -1.99 4.78 -26.72 -0.13 -2.12 16 11 C 0.19 2.98 3.29 -68.86 -0.23 2.75 16 12 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 13 N -0.81 -11.70 8.67 -5.65 -0.05 -11.75 16 14 C 0.16 2.51 7.31 -13.06 -0.10 2.41 16 15 N -0.49 -7.84 11.55 -9.87 -0.11 -7.95 16 16 C 0.17 2.47 6.32 -156.38 -0.99 1.48 16 17 C 0.01 0.11 2.14 -92.48 -0.20 -0.09 16 18 C -0.11 -1.09 5.12 -27.34 -0.14 -1.23 16 19 C -0.12 -0.95 5.26 -29.60 -0.16 -1.11 16 20 C -0.12 -0.80 5.26 -29.60 -0.16 -0.96 16 21 C -0.12 -0.82 5.61 -27.34 -0.15 -0.97 16 22 C -0.11 -0.83 5.31 -27.44 -0.15 -0.98 16 23 C -0.11 -1.03 5.22 -25.62 -0.13 -1.16 16 24 N -0.39 -6.03 12.02 30.90 0.37 -5.65 16 25 O 0.07 1.10 11.29 18.09 0.20 1.30 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.98 7.75 -51.93 -0.40 0.58 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.34 4.03 9.06 -39.29 -0.36 3.67 16 32 H 0.35 4.67 8.98 -39.29 -0.35 4.32 16 33 H 0.10 1.07 6.63 -51.93 -0.34 0.72 16 34 H 0.07 0.71 6.98 -51.93 -0.36 0.35 16 35 H 0.07 0.78 7.71 -51.93 -0.40 0.38 16 36 H 0.06 0.54 7.47 -51.93 -0.39 0.15 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.06 0.40 7.46 -51.93 -0.39 0.01 16 40 H 0.07 0.49 6.98 -51.93 -0.36 0.13 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.46 6.63 -51.93 -0.34 0.12 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 LS Contribution 355.57 15.07 5.36 5.36 Total: -1.00 -30.76 355.57 -9.03 -39.80 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.45 Total: 2.83 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -3.07 Total: -14.66 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: 0.94 Total: -51.24 kcal Atomic # 8 Polarization: 1.10 SS G_CDS: 0.20 Total: 1.30 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.76 -9.03 -39.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573722096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.398 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds