Wall clock time and date at job start Fri Apr 10 2020 20:05:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99808 * 2 1 4 4 H 1.48496 * 109.47491 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47561 * 300.01066 * 3 2 1 6 6 H 1.48507 * 109.46814 * 60.00587 * 3 2 1 7 7 C 1.37880 * 120.00369 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99784 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99567 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46808 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.47071 * 180.02562 * 10 9 7 12 12 H 1.09000 * 109.46998 * 54.99547 * 11 10 9 13 13 N 1.46898 * 109.46780 * 294.99860 * 11 10 9 14 14 C 1.50701 * 109.46915 * 174.99798 * 11 10 9 15 15 N 1.31122 * 126.55335 * 254.99913 * 14 11 10 16 16 C 1.34494 * 105.61798 * 179.97438 * 15 14 11 17 17 C 1.50699 * 126.28886 * 179.97438 * 16 15 14 18 18 C 1.50470 * 108.87490 * 120.00063 * 17 16 15 19 19 C 1.54246 * 108.51998 * 214.92919 * 18 17 16 20 20 C 1.45537 * 112.40731 * 280.01038 * 19 18 17 21 21 C 1.54242 * 112.40484 * 61.93498 * 20 19 18 22 22 C 1.50473 * 108.52431 * 280.01487 * 21 20 19 23 23 C 1.54065 * 112.49668 * 94.15076 * 22 21 20 24 24 N 1.29942 * 107.42296 * 0.24295 * 16 15 14 25 25 O 1.21305 * 110.25340 * 359.57832 * 24 16 15 26 26 H 0.96993 * 120.00518 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47345 * 60.00289 * 9 7 2 28 28 H 1.09001 * 109.47768 * 300.00162 * 9 7 2 29 29 H 1.08994 * 109.47175 * 60.00176 * 10 9 7 30 30 H 1.08996 * 109.47068 * 299.99728 * 10 9 7 31 31 H 1.00903 * 110.99643 * 176.04459 * 13 11 10 32 32 H 1.00903 * 111.00261 * 299.99803 * 13 11 10 33 33 H 1.09001 * 108.76931 * 1.49148 * 17 16 15 34 34 H 1.09003 * 109.63195 * 95.21835 * 18 17 16 35 35 H 1.09001 * 109.62960 * 334.63878 * 18 17 16 36 36 H 1.09001 * 108.89247 * 40.76541 * 19 18 17 37 37 H 1.08997 * 108.89409 * 159.25841 * 19 18 17 38 38 H 1.09000 * 108.89458 * 182.68905 * 20 19 18 39 39 H 1.08995 * 108.89787 * 301.28165 * 20 19 18 40 40 H 1.09006 * 109.62552 * 39.72561 * 21 20 19 41 41 H 1.09001 * 109.62814 * 160.30110 * 21 20 19 42 42 H 1.08999 * 108.87754 * 214.92438 * 22 21 20 43 43 H 1.08996 * 108.87890 * 333.37233 * 22 21 20 44 44 H 1.09005 * 108.81720 * 79.14584 * 23 22 21 45 45 H 1.09004 * 108.81387 * 197.52830 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3967 -1.2123 6 1 1.8903 2.3964 1.2127 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 1 0.7886 -5.0068 -0.8432 13 7 0.7284 -5.1188 1.2538 14 6 2.4552 -6.1297 -0.1251 15 7 2.6769 -6.8546 -1.1950 16 6 3.6191 -7.7461 -0.8396 17 6 4.2189 -8.8098 -1.7226 18 6 5.7029 -8.5810 -1.8209 19 6 6.1665 -8.9749 -3.2384 20 6 6.3321 -10.4130 -3.3883 21 6 5.0122 -11.1821 -3.1751 22 6 4.7706 -11.3164 -1.6960 23 6 3.8731 -10.1939 -1.1410 24 7 3.9130 -7.5255 0.4068 25 8 3.2592 -6.5975 0.8346 26 1 -0.4850 0.8399 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 2.8721 -3.6043 0.8894 30 1 2.8721 -3.6043 -0.8905 31 1 0.1640 -5.9553 1.2510 32 1 1.3480 -5.1034 2.0500 33 1 3.7826 -8.7264 -2.7180 34 1 6.2180 -9.1961 -1.0831 35 1 5.9237 -7.5285 -1.6427 36 1 5.4278 -8.6274 -3.9606 37 1 7.1183 -8.4863 -3.4469 38 1 6.7050 -10.6228 -4.3908 39 1 7.0639 -10.7619 -2.6597 40 1 4.1898 -10.6316 -3.6320 41 1 5.0886 -12.1720 -3.6250 42 1 4.2939 -12.2773 -1.5023 43 1 5.7294 -11.2898 -1.1782 44 1 2.8344 -10.4250 -1.3774 45 1 3.9864 -10.1565 -0.0575 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573722096.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:05:44 Heat of formation + Delta-G solvation = 10.371848 kcal Electronic energy + Delta-G solvation = -23504.580590 eV Core-core repulsion = 20136.855659 eV Total energy + Delta-G solvation = -3367.724931 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.69741 -40.14331 -38.13585 -36.91275 -35.15910 -34.03065 -33.29508 -32.23717 -31.82742 -28.23314 -26.63471 -25.93382 -25.79015 -24.42367 -22.97948 -21.74623 -21.40490 -20.04692 -19.12405 -18.80003 -18.27721 -17.29100 -16.96389 -16.58406 -16.20280 -15.98080 -15.62494 -15.48428 -14.87019 -14.46314 -14.30500 -14.10341 -14.02742 -13.78378 -13.54439 -13.40589 -13.11012 -12.84637 -12.80447 -12.48200 -12.43457 -12.23686 -12.11148 -11.88680 -11.71151 -11.64174 -11.46121 -11.37419 -11.31625 -11.18559 -11.17553 -10.82143 -10.49615 -10.01941 -8.13561 -6.23124 -0.00150 1.11189 1.42367 1.43195 1.55401 1.67710 2.42747 2.47731 2.92155 3.20012 3.46734 3.54342 3.68805 3.74188 3.97597 4.00684 4.10215 4.19014 4.23507 4.27564 4.30947 4.39999 4.46502 4.62894 4.73339 4.81878 4.82637 4.90539 4.96673 4.99961 5.04118 5.11897 5.18436 5.21356 5.27457 5.32050 5.37522 5.44633 5.53783 5.58398 5.83195 5.97735 5.99060 6.30616 6.45337 6.95038 7.04673 7.44840 8.97941 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.026443 B = 0.002811 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.633537 B = 9957.280065 C =10584.016279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.280 1.280 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.040 3.960 10 C -0.088 4.088 11 C 0.201 3.799 12 H 0.123 0.877 13 N -0.818 5.818 14 C 0.162 3.838 15 N -0.501 5.501 16 C 0.171 3.829 17 C 0.010 3.990 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.121 4.121 22 C -0.110 4.110 23 C -0.104 4.104 24 N -0.399 5.399 25 O 0.066 5.934 26 H 0.262 0.738 27 H -0.008 1.008 28 H 0.018 0.982 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.356 0.644 32 H 0.356 0.644 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.191 -24.316 -4.233 26.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.073 0.927 9 C 0.003 3.997 10 C -0.127 4.127 11 C 0.085 3.915 12 H 0.141 0.859 13 N -0.349 5.349 14 C -0.061 4.061 15 N -0.235 5.235 16 C -0.102 4.102 17 C -0.010 4.010 18 C -0.143 4.143 19 C -0.150 4.150 20 C -0.155 4.155 21 C -0.158 4.158 22 C -0.147 4.147 23 C -0.142 4.142 24 N -0.110 5.110 25 O 0.012 5.988 26 H 0.071 0.929 27 H 0.011 0.989 28 H 0.037 0.963 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 10.205 -24.110 -4.379 26.545 hybrid contribution 0.501 0.570 0.315 0.821 sum 10.706 -23.540 -4.064 26.178 Atomic orbital electron populations 1.70094 1.07530 1.27483 1.51761 1.25865 0.95699 1.02919 0.95019 0.85508 0.79038 0.79415 0.77720 1.18954 1.20543 1.20403 1.21732 0.93345 0.92706 1.50306 0.92718 1.18825 0.93776 0.90885 0.96262 1.21542 0.98164 0.91863 1.01161 1.20416 0.88987 0.85878 0.96207 0.85943 1.58776 1.27195 1.46210 1.02676 1.30968 0.94102 0.98347 0.82697 1.71953 1.16935 1.07673 1.26933 1.26579 0.94190 0.98772 0.90682 1.19684 0.95867 0.89173 0.96271 1.21351 0.92852 1.00684 0.99442 1.20449 1.01975 0.97789 0.94789 1.20505 0.97864 0.94500 1.02652 1.21402 0.97640 1.01058 0.95733 1.21295 0.99719 0.97153 0.96555 1.21940 1.00576 0.91919 0.99803 1.74531 1.16740 1.05323 1.14393 1.85247 1.39461 1.34906 1.39180 0.92882 0.98946 0.96325 0.92057 0.92815 0.82904 0.82938 0.88089 0.90337 0.93807 0.92020 0.91330 0.91018 0.91621 0.91931 0.90328 0.90720 0.91538 0.91758 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.08 13.29 21.45 0.28 -55.79 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.96 44.35 29.54 68.60 2.03 46.37 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 7 C -0.54 -30.57 9.11 25.60 0.23 -30.34 16 8 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 9 C 0.04 2.02 4.86 29.85 0.15 2.17 16 10 C -0.09 -3.50 4.78 30.60 0.15 -3.35 16 11 C 0.20 6.42 3.29 44.17 0.15 6.56 16 12 H 0.12 3.98 8.14 -2.39 -0.02 3.96 16 13 N -0.82 -23.19 8.67 -171.79 -1.49 -24.68 16 14 C 0.16 5.04 7.31 88.38 0.65 5.68 16 15 N -0.50 -15.97 11.55 -303.19 -3.50 -19.48 16 16 C 0.17 4.91 6.32 138.46 0.87 5.78 16 17 C 0.01 0.21 2.14 -12.00 -0.03 0.19 16 18 C -0.10 -2.02 5.12 30.20 0.15 -1.86 16 19 C -0.11 -1.64 5.26 28.74 0.15 -1.49 16 20 C -0.12 -1.32 5.26 28.74 0.15 -1.17 16 21 C -0.12 -1.34 5.61 30.20 0.17 -1.17 16 22 C -0.11 -1.37 5.31 30.14 0.16 -1.21 16 23 C -0.10 -1.83 5.22 31.31 0.16 -1.67 16 24 N -0.40 -12.21 12.02 -60.31 -0.73 -12.93 16 25 O 0.07 2.05 11.29 74.79 0.84 2.90 16 26 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 27 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 28 H 0.02 1.00 7.75 -2.39 -0.02 0.98 16 29 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.05 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.36 8.14 9.06 -89.69 -0.81 7.33 16 32 H 0.36 9.30 8.98 -89.69 -0.81 8.50 16 33 H 0.10 2.10 6.63 -2.39 -0.02 2.08 16 34 H 0.08 1.42 6.98 -2.39 -0.02 1.40 16 35 H 0.04 1.03 7.71 -2.39 -0.02 1.01 16 36 H 0.06 0.94 7.47 -2.39 -0.02 0.93 16 37 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.07 0.70 7.46 -2.39 -0.02 0.68 16 40 H 0.06 0.78 6.98 -2.38 -0.02 0.76 16 41 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.81 6.63 -2.39 -0.02 0.80 16 44 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 45 H 0.05 1.08 7.86 -2.38 -0.02 1.06 16 Total: -1.00 -65.45 355.57 0.39 -65.06 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.62 Total: 19.80 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 3.58 Total: -21.24 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -5.43 Total: -112.88 kcal Atomic # 8 Polarization: 2.05 SS G_CDS: 0.84 Total: 2.90 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -65.45 0.39 -65.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573722096.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.429 kcal (2) G-P(sol) polarization free energy of solvation -65.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds