Wall clock time and date at job start Fri Apr 10 2020 20:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35453 * 116.99799 * 2 1 4 4 N 1.32319 * 119.15801 * 359.96871 * 3 2 1 5 5 C 1.32508 * 120.95559 * 180.02562 * 4 3 2 6 6 C 1.50693 * 120.37056 * 179.97438 * 5 4 3 7 7 C 1.38126 * 119.26643 * 359.72395 * 5 4 3 8 8 C 1.39630 * 118.44780 * 0.56312 * 7 5 4 9 9 N 1.38538 * 120.49485 * 179.70943 * 8 7 5 10 10 C 1.46493 * 119.99896 * 4.72500 * 9 8 7 11 11 C 1.50705 * 109.47555 * 84.20932 * 10 9 8 12 12 H 1.07999 * 119.99357 * 355.62980 * 11 10 9 13 13 C 1.37878 * 120.00388 * 175.89669 * 11 10 9 14 14 N 1.31512 * 120.00071 * 180.02562 * 13 11 10 15 15 Si 1.86804 * 119.99779 * 0.02562 * 13 11 10 16 16 H 1.48495 * 109.47069 * 89.99496 * 15 13 11 17 17 H 1.48501 * 109.46714 * 209.99637 * 15 13 11 18 18 H 1.48500 * 109.47046 * 329.99579 * 15 13 11 19 19 C 1.46493 * 120.00073 * 184.72202 * 9 8 7 20 20 C 1.52997 * 109.47387 * 88.99672 * 19 9 8 21 21 C 1.53007 * 109.47016 * 56.85944 * 20 19 9 22 22 C 1.52995 * 109.47496 * 176.85965 * 20 19 9 23 23 C 1.53001 * 109.47149 * 296.86282 * 20 19 9 24 24 N 1.32271 * 119.15761 * 179.97438 * 3 2 1 25 25 H 1.09005 * 109.47190 * 60.00833 * 1 2 3 26 26 H 1.09004 * 109.46936 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47676 * 300.00710 * 1 2 3 28 28 H 1.08997 * 109.47477 * 90.00344 * 6 5 4 29 29 H 1.09008 * 109.47281 * 210.00086 * 6 5 4 30 30 H 1.09002 * 109.47510 * 329.99972 * 6 5 4 31 31 H 1.07996 * 120.77841 * 180.27142 * 7 5 4 32 32 H 1.09004 * 109.47021 * 324.21276 * 10 9 8 33 33 H 1.09000 * 109.47462 * 204.21028 * 10 9 8 34 34 H 0.96995 * 120.00341 * 180.02562 * 14 13 11 35 35 H 1.08996 * 109.47284 * 208.99879 * 19 9 8 36 36 H 1.09005 * 109.47529 * 328.99919 * 19 9 8 37 37 H 1.08999 * 109.46628 * 60.00155 * 21 20 19 38 38 H 1.08993 * 109.47252 * 180.02562 * 21 20 19 39 39 H 1.09006 * 109.46761 * 300.00218 * 21 20 19 40 40 H 1.08997 * 109.47479 * 59.99981 * 22 20 19 41 41 H 1.09006 * 109.47591 * 180.02562 * 22 20 19 42 42 H 1.09003 * 109.47039 * 300.00106 * 22 20 19 43 43 H 1.08996 * 109.46969 * 66.63714 * 23 20 19 44 44 H 1.08997 * 109.47109 * 186.63522 * 23 20 19 45 45 H 1.08998 * 109.46995 * 306.63919 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0439 1.2069 0.0000 4 7 1.3069 2.3059 -0.0006 5 6 1.8711 3.5049 -0.0012 6 6 1.0191 4.7478 -0.0025 7 6 3.2489 3.6028 0.0048 8 6 3.9995 2.4254 -0.0010 9 7 5.3840 2.4743 -0.0014 10 6 6.0714 3.7632 0.1086 11 6 6.1854 4.1495 1.5608 12 1 5.7244 3.5358 2.3205 13 6 6.8736 5.2893 1.9191 14 7 6.9735 5.6261 3.1864 15 14 7.6641 6.3551 0.6042 16 1 6.6933 7.3831 0.1506 17 1 8.8663 7.0226 1.1650 18 1 8.0612 5.5066 -0.5480 19 6 6.1605 1.2370 -0.1119 20 6 6.4046 0.9180 -1.5882 21 6 7.1110 2.1000 -2.2553 22 6 7.2815 -0.3305 -1.7021 23 6 5.0653 0.6658 -2.2836 24 7 3.3656 1.2568 0.0005 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8898 28 1 0.8132 5.0483 1.0248 29 1 1.5481 5.5504 -0.5166 30 1 0.0799 4.5440 -0.5166 31 1 3.7344 4.5675 0.0089 32 1 5.5037 4.5246 -0.4264 33 1 7.0682 3.6816 -0.3250 34 1 7.4573 6.4281 3.4385 35 1 7.1169 1.3618 0.3958 36 1 5.6081 0.4187 0.3501 37 1 8.0651 2.2797 -1.7598 38 1 7.2845 1.8730 -3.3071 39 1 6.4862 2.9895 -2.1741 40 1 6.7784 -1.1725 -1.2269 41 1 7.4558 -0.5575 -2.7539 42 1 8.2357 -0.1507 -1.2066 43 1 4.4879 1.5900 -2.3061 44 1 5.2440 0.3242 -3.3031 45 1 4.5100 -0.0964 -1.7370 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576838788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:05:58 Heat of formation + Delta-G solvation = -4.632630 kcal Electronic energy + Delta-G solvation = -25046.031086 eV Core-core repulsion = 21677.655512 eV Total energy + Delta-G solvation = -3368.375574 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.10062 -39.97535 -38.82335 -36.42506 -35.18061 -34.26849 -32.02697 -30.25797 -29.54174 -28.14868 -28.12043 -28.06524 -26.51579 -24.87925 -23.68577 -21.94733 -19.97023 -19.14972 -19.06380 -18.52726 -17.36457 -17.32231 -16.55537 -16.21986 -15.92730 -15.67155 -15.32829 -15.10662 -15.00977 -14.57743 -14.33000 -14.15106 -13.89359 -13.58111 -13.51288 -13.10023 -13.05703 -12.95324 -12.76910 -12.67404 -12.54742 -12.41383 -12.30839 -11.89835 -11.87865 -11.83125 -11.64915 -11.57317 -11.43430 -11.36792 -10.80268 -10.06657 -10.00331 -8.64899 -8.31295 -6.39056 0.28721 0.50010 1.38217 1.39141 1.48549 1.55257 2.32154 2.33469 2.96848 3.02326 3.21176 3.79111 3.89319 3.91371 4.01651 4.14214 4.40816 4.45994 4.46965 4.51891 4.53076 4.60240 4.71836 4.72858 4.78490 4.80102 4.83889 4.84152 4.91858 4.94005 4.97482 5.02963 5.07012 5.10142 5.22732 5.31621 5.35402 5.41225 5.49686 5.53149 5.69249 6.10787 6.28700 6.50884 6.56124 6.66683 7.24376 7.39167 8.85507 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.012318 B = 0.006622 C = 0.004859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.504058 B = 4226.998406 C = 5760.669189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 O -0.310 6.310 3 C 0.518 3.482 4 N -0.618 5.618 5 C 0.219 3.781 6 C -0.095 4.095 7 C -0.332 4.332 8 C 0.470 3.530 9 N -0.567 5.567 10 C 0.234 3.766 11 C -0.539 4.539 12 H 0.021 0.979 13 C 0.020 3.980 14 N -0.944 5.944 15 Si 0.941 3.059 16 H -0.261 1.261 17 H -0.284 1.284 18 H -0.237 1.237 19 C 0.133 3.867 20 C -0.079 4.079 21 C -0.139 4.139 22 C -0.130 4.130 23 C -0.115 4.115 24 N -0.602 5.602 25 H 0.063 0.937 26 H 0.130 0.870 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.141 0.859 32 H 0.036 0.964 33 H 0.057 0.943 34 H 0.269 0.731 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.021 0.979 44 H 0.060 0.940 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.268 -6.784 -12.829 16.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.212 6.212 3 C 0.213 3.787 4 N -0.356 5.356 5 C 0.079 3.921 6 C -0.152 4.152 7 C -0.360 4.360 8 C 0.227 3.773 9 N -0.275 5.275 10 C 0.113 3.887 11 C -0.578 4.578 12 H 0.039 0.961 13 C -0.179 4.179 14 N -0.583 5.583 15 Si 0.763 3.237 16 H -0.185 1.185 17 H -0.210 1.210 18 H -0.160 1.160 19 C 0.010 3.990 20 C -0.081 4.081 21 C -0.196 4.196 22 C -0.187 4.187 23 C -0.172 4.172 24 N -0.340 5.340 25 H 0.081 0.919 26 H 0.148 0.852 27 H 0.075 0.925 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.159 0.841 32 H 0.054 0.946 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.079 0.921 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.355 -7.797 -12.705 16.623 hybrid contribution 0.647 1.455 0.523 1.676 sum -6.709 -6.342 -12.182 15.285 Atomic orbital electron populations 1.23151 0.74176 1.04917 1.02652 1.86005 1.25015 1.22751 1.87466 1.20400 0.85309 0.85212 0.87776 1.67890 1.40400 0.98370 1.28905 1.21541 0.91057 0.93309 0.86190 1.20793 0.99172 0.90995 1.04240 1.22029 0.95527 0.99571 1.18871 1.18232 0.86049 0.87836 0.85201 1.46649 1.00294 1.08438 1.72074 1.19652 0.93375 0.80691 0.95008 1.21529 1.34544 1.09324 0.92381 0.96057 1.25794 0.96026 0.98506 0.97594 1.70060 1.43276 1.26432 1.18572 0.85819 0.78608 0.79527 0.79760 1.18521 1.20961 1.15959 1.21581 0.95132 0.85695 0.96549 1.20941 0.96228 0.96810 0.94075 1.21924 0.99771 0.97237 1.00697 1.21732 0.98827 0.95535 1.02651 1.21654 0.95790 1.00093 0.99675 1.66898 1.08507 1.28419 1.30195 0.91874 0.85182 0.92462 0.89251 0.88881 0.88817 0.84119 0.94581 0.92484 0.92243 0.91295 0.91287 0.92625 0.91261 0.93959 0.92521 0.90996 0.92107 0.95942 0.92077 0.92981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.03 10.36 113.37 1.17 2.20 16 2 O -0.31 -10.31 10.55 -87.51 -0.92 -11.23 16 3 C 0.52 19.78 8.49 180.58 1.53 21.32 16 4 N -0.62 -22.03 9.16 -301.77 -2.76 -24.80 16 5 C 0.22 7.60 6.81 42.43 0.29 7.89 16 6 C -0.09 -2.34 10.21 71.23 0.73 -1.61 16 7 C -0.33 -13.21 8.99 22.58 0.20 -13.01 16 8 C 0.47 19.76 5.77 133.18 0.77 20.53 16 9 N -0.57 -23.48 2.06 -707.74 -1.46 -24.94 16 10 C 0.23 10.34 2.63 85.64 0.22 10.56 16 11 C -0.54 -29.60 9.90 25.60 0.25 -29.35 16 12 H 0.02 1.37 8.06 -2.91 -0.02 1.34 16 13 C 0.02 1.07 5.47 84.66 0.46 1.53 16 14 N -0.94 -56.96 13.96 21.45 0.30 -56.66 16 15 Si 0.94 40.14 27.55 68.60 1.89 42.03 16 16 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 17 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.24 -9.00 6.43 99.48 0.64 -8.36 16 19 C 0.13 4.84 4.59 86.38 0.40 5.24 16 20 C -0.08 -2.30 0.85 -52.18 -0.04 -2.34 16 21 C -0.14 -3.89 7.19 71.98 0.52 -3.37 16 22 C -0.13 -2.99 8.47 71.98 0.61 -2.38 16 23 C -0.11 -3.45 7.08 71.98 0.51 -2.94 16 24 N -0.60 -24.71 7.45 -311.08 -2.32 -27.03 16 25 H 0.06 1.35 8.09 -2.38 -0.02 1.33 16 26 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.06 1.30 8.09 -2.39 -0.02 1.28 16 28 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.09 2.02 8.09 -2.38 -0.02 2.00 16 30 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.14 5.68 6.28 -2.91 -0.02 5.66 16 32 H 0.04 1.54 6.00 -2.38 -0.01 1.53 16 33 H 0.06 2.39 5.19 -2.39 -0.01 2.37 16 34 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 35 H 0.07 2.54 8.06 -2.39 -0.02 2.52 16 36 H 0.07 2.64 7.36 -2.38 -0.02 2.62 16 37 H 0.05 1.53 7.94 -2.39 -0.02 1.51 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.04 1.33 6.21 -2.38 -0.01 1.31 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 42 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.02 0.76 6.66 -2.39 -0.02 0.74 16 44 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.05 1.71 7.42 -2.39 -0.02 1.69 16 Total: -1.00 -68.00 355.09 3.25 -64.75 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.90 Total: 23.59 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 7.63 Total: 14.28 kcal Atomic # 7 Polarization: -127.18 SS G_CDS: -6.24 Total: -133.42 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: -0.92 Total: -11.23 kcal Atomic # 14 Polarization: 40.14 SS G_CDS: 1.89 Total: 42.03 kcal Total: -68.00 3.25 -64.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576838788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.119 kcal (2) G-P(sol) polarization free energy of solvation -67.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds