Wall clock time and date at job start Fri Apr 10 2020 20:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38223 * 120.01283 * 2 1 4 4 C 1.38223 * 120.02362 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.97557 * 180.02562 * 4 3 2 6 6 N 1.46890 * 109.47212 * 89.99991 * 5 4 3 7 7 C 1.46894 * 111.00324 * 76.22473 * 6 5 4 8 8 C 1.46904 * 111.00282 * 200.17774 * 6 5 4 9 9 C 1.53005 * 109.47073 * 86.70579 * 8 6 5 10 10 C 1.52995 * 109.47267 * 294.32281 * 9 8 6 11 11 C 1.52997 * 109.46724 * 54.32250 * 9 8 6 12 12 C 1.52997 * 109.46884 * 174.32219 * 9 8 6 13 13 C 1.50701 * 109.46736 * 180.02562 * 12 9 8 14 14 H 1.08003 * 120.00509 * 359.97438 * 13 12 9 15 15 C 1.37882 * 119.99962 * 179.97438 * 13 12 9 16 16 N 1.31508 * 120.00190 * 179.97438 * 15 13 12 17 17 Si 1.86802 * 119.99932 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47138 * 89.99572 * 17 15 13 19 19 H 1.48500 * 109.47283 * 210.00096 * 17 15 13 20 20 H 1.48496 * 109.47071 * 329.99849 * 17 15 13 21 21 C 1.38271 * 120.05564 * 359.97438 * 4 3 2 22 22 C 1.38173 * 120.02108 * 359.97438 * 21 4 3 23 23 C 1.38439 * 120.01219 * 179.97438 * 2 1 3 24 24 F 1.35095 * 120.02748 * 359.75010 * 23 2 1 25 25 H 1.09001 * 109.47602 * 270.02808 * 1 2 3 26 26 H 1.09007 * 109.46970 * 30.02229 * 1 2 3 27 27 H 1.09000 * 109.47315 * 150.02124 * 1 2 3 28 28 H 1.07996 * 119.98832 * 359.97438 * 3 2 1 29 29 H 1.09000 * 109.47201 * 210.00712 * 5 4 3 30 30 H 1.09006 * 109.46692 * 330.00162 * 5 4 3 31 31 H 1.09002 * 109.47118 * 63.90618 * 7 6 5 32 32 H 1.09000 * 109.47694 * 183.91252 * 7 6 5 33 33 H 1.09001 * 109.46928 * 303.91279 * 7 6 5 34 34 H 1.08988 * 109.47505 * 206.71116 * 8 6 5 35 35 H 1.09000 * 109.46746 * 326.71053 * 8 6 5 36 36 H 1.09003 * 109.47549 * 70.71182 * 10 9 8 37 37 H 1.08999 * 109.47391 * 190.70799 * 10 9 8 38 38 H 1.09000 * 109.47323 * 310.70860 * 10 9 8 39 39 H 1.08997 * 109.47542 * 65.05052 * 11 9 8 40 40 H 1.09000 * 109.47272 * 185.04938 * 11 9 8 41 41 H 1.09005 * 109.47430 * 305.04605 * 11 9 8 42 42 H 1.09005 * 109.47063 * 299.99982 * 12 9 8 43 43 H 1.08989 * 109.47664 * 60.00292 * 12 9 8 44 44 H 0.96999 * 120.00429 * 179.97438 * 16 15 13 45 45 H 1.07999 * 119.99187 * 180.02562 * 21 4 3 46 46 H 1.07997 * 120.01243 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1969 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3332 2.5028 0.0011 6 7 4.5773 2.9267 1.3862 7 6 5.6648 2.1466 1.9917 8 6 4.8613 4.3664 1.4539 9 6 3.5462 5.1412 1.5603 10 6 2.7430 4.9622 0.2705 11 6 2.7354 4.6095 2.7439 12 6 3.8452 6.6265 1.7730 13 6 2.5499 7.3895 1.8784 14 1 1.6076 6.8673 1.8009 15 6 2.5676 8.7543 2.0736 16 7 1.4373 9.4202 2.1651 17 14 4.1973 9.6576 2.2069 18 1 4.6325 10.0952 0.8562 19 1 4.0348 10.8452 3.0835 20 1 5.2200 8.7506 2.7868 21 6 4.2733 0.0005 0.0016 22 6 3.5842 -1.1972 0.0027 23 6 2.1994 -1.1988 0.0005 24 9 1.5247 -2.3692 0.0062 25 1 -0.3634 0.0005 1.0276 26 1 -0.3633 0.8899 -0.5142 27 1 -0.3634 -0.8902 -0.5135 28 1 1.6583 2.1322 -0.0004 29 1 5.2859 2.3732 -0.5125 30 1 3.7438 3.2622 -0.5128 31 1 6.5945 2.3443 1.4580 32 1 5.7784 2.4323 3.0374 33 1 5.4286 1.0844 1.9288 34 1 5.4773 4.5745 2.3286 35 1 5.3927 4.6746 0.5535 36 1 2.3679 3.9403 0.2148 37 1 1.9040 5.6579 0.2654 38 1 3.3849 5.1609 -0.5878 39 1 3.2678 4.8178 3.6719 40 1 1.7615 5.0985 2.7661 41 1 2.5992 3.5333 2.6368 42 1 4.4174 6.7540 2.6920 43 1 4.4227 7.0053 0.9299 44 1 1.4498 10.3803 2.3029 45 1 5.3533 0.0019 0.0024 46 1 4.1254 -2.1317 0.0039 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578959679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:06:09 Heat of formation + Delta-G solvation = -29.343547 kcal Electronic energy + Delta-G solvation = -24101.683295 eV Core-core repulsion = 20712.316214 eV Total energy + Delta-G solvation = -3389.367081 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.97665 -39.71514 -38.06407 -35.19291 -32.97381 -32.16083 -31.37502 -28.04155 -27.28724 -26.98584 -26.41024 -25.93784 -23.41925 -22.40187 -21.55367 -20.41427 -17.93349 -17.62801 -16.82303 -16.64142 -15.78376 -15.65155 -15.16918 -14.86905 -14.44626 -14.12197 -13.68009 -13.53558 -13.41776 -13.35905 -13.27141 -13.05527 -12.59181 -12.47007 -12.21621 -12.17892 -11.87934 -11.76924 -11.57397 -11.30814 -11.10804 -10.93065 -10.80791 -10.53688 -10.47140 -10.31460 -9.78605 -9.64757 -9.19655 -8.97637 -8.92986 -8.58822 -8.48965 -8.04992 -5.99289 -3.95159 1.04557 1.14790 3.31916 3.39978 3.41612 3.43145 4.17399 4.26723 4.48697 4.55323 4.64784 4.75052 5.08975 5.11898 5.27990 5.29236 5.34391 5.44236 5.49002 5.49560 5.56496 5.63574 5.76401 5.82520 5.88522 5.94453 5.96865 6.01215 6.07103 6.15099 6.19706 6.24335 6.47119 6.49310 6.63818 6.69923 6.81606 6.84862 7.11318 7.17365 7.19647 7.22390 7.34780 7.38903 7.52073 7.86666 8.60932 9.06995 9.64026 11.13850 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.024947 B = 0.003579 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.095505 B = 7821.566075 C = 8587.096217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 C -0.072 4.072 4 C -0.070 4.070 5 C 0.074 3.926 6 N -0.528 5.528 7 C 0.022 3.978 8 C 0.062 3.938 9 C -0.042 4.042 10 C -0.137 4.137 11 C -0.116 4.116 12 C -0.005 4.005 13 C -0.505 4.505 14 H 0.078 0.922 15 C 0.065 3.935 16 N -0.906 5.906 17 Si 0.875 3.125 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.267 1.267 21 C -0.095 4.095 22 C -0.152 4.152 23 C 0.087 3.913 24 F -0.143 7.143 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.137 0.863 29 H 0.040 0.960 30 H 0.104 0.896 31 H 0.020 0.980 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.055 0.945 41 H 0.049 0.951 42 H 0.013 0.987 43 H 0.007 0.993 44 H 0.261 0.739 45 H 0.126 0.874 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.348 -20.166 -4.967 21.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.118 4.118 3 C -0.090 4.090 4 C -0.070 4.070 5 C -0.053 4.053 6 N -0.251 5.251 7 C -0.126 4.126 8 C -0.066 4.066 9 C -0.043 4.043 10 C -0.194 4.194 11 C -0.173 4.173 12 C -0.043 4.043 13 C -0.543 4.543 14 H 0.096 0.904 15 C -0.136 4.136 16 N -0.546 5.546 17 Si 0.703 3.297 18 H -0.205 1.205 19 H -0.216 1.216 20 H -0.192 1.192 21 C -0.114 4.114 22 C -0.171 4.171 23 C 0.067 3.933 24 F -0.122 7.122 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.155 0.845 29 H 0.058 0.942 30 H 0.122 0.878 31 H 0.038 0.962 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.032 0.968 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.144 0.856 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.839 -20.108 -4.663 21.201 hybrid contribution 1.619 0.559 -0.302 1.740 sum 6.458 -19.549 -4.965 21.178 Atomic orbital electron populations 1.20735 0.90208 1.03218 1.02974 1.19961 0.97058 0.91886 1.02901 1.20940 0.93545 0.97219 0.97296 1.19877 0.93740 0.94810 0.98618 1.21492 0.98666 0.94529 0.90618 1.61910 1.41955 1.04664 1.16551 1.22477 0.91775 0.98648 0.99725 1.22400 0.98366 0.85677 1.00116 1.20354 0.92719 0.95538 0.95666 1.22030 1.00943 1.00242 0.96157 1.21580 1.00029 0.99342 0.96367 1.19645 0.97701 0.91221 0.95744 1.21133 0.92681 0.92011 1.48506 0.90395 1.25014 0.95795 0.97729 0.95041 1.69904 1.25728 1.08016 1.50903 0.86860 0.85266 0.79454 0.78145 1.20535 1.21596 1.19173 1.20882 0.99796 0.91170 0.99511 1.21027 0.92199 0.99521 1.04367 1.17535 0.90035 0.80834 1.04866 1.91454 1.80503 1.46145 1.94089 0.90689 0.90701 0.91474 0.84522 0.94207 0.87768 0.96185 0.91452 0.91691 0.91571 0.94747 0.93711 0.90949 0.94481 0.94487 0.92562 0.93166 0.96831 0.97484 0.92914 0.85594 0.85161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 9.83 36.00 0.35 -0.77 16 2 C -0.12 -1.35 5.89 -104.56 -0.62 -1.97 16 3 C -0.07 -0.85 9.31 -39.59 -0.37 -1.22 16 4 C -0.07 -0.80 5.15 -104.61 -0.54 -1.34 16 5 C 0.07 0.89 4.30 -4.98 -0.02 0.87 16 6 N -0.53 -7.07 3.41 -244.37 -0.83 -7.91 16 7 C 0.02 0.25 9.20 60.06 0.55 0.80 16 8 C 0.06 0.96 4.23 -3.82 -0.02 0.94 16 9 C -0.04 -0.78 0.61 -154.51 -0.09 -0.88 16 10 C -0.14 -2.41 6.81 37.16 0.25 -2.15 16 11 C -0.12 -2.18 7.97 37.16 0.30 -1.88 16 12 C -0.01 -0.12 3.11 -27.88 -0.09 -0.21 16 13 C -0.51 -13.71 8.11 -34.44 -0.28 -13.99 16 14 H 0.08 2.26 6.00 -52.48 -0.31 1.95 16 15 C 0.06 1.84 5.47 -17.82 -0.10 1.75 16 16 N -0.91 -27.54 13.96 55.43 0.77 -26.77 16 17 Si 0.87 21.55 27.47 -169.99 -4.67 16.88 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.27 -6.34 6.54 56.52 0.37 -5.97 16 21 C -0.09 -0.97 8.30 -39.59 -0.33 -1.30 16 22 C -0.15 -1.58 10.03 -39.51 -0.40 -1.97 16 23 C 0.09 1.01 7.24 -39.42 -0.29 0.72 16 24 F -0.14 -1.72 16.48 2.25 0.04 -1.68 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.66 8.09 -51.92 -0.42 0.24 16 27 H 0.07 0.62 7.64 -51.93 -0.40 0.22 16 28 H 0.14 1.62 6.41 -52.49 -0.34 1.28 16 29 H 0.04 0.44 7.94 -51.93 -0.41 0.03 16 30 H 0.10 1.34 4.21 -51.93 -0.22 1.12 16 31 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.77 8.06 -51.93 -0.42 0.35 16 33 H 0.06 0.68 6.18 -51.93 -0.32 0.36 16 34 H 0.07 1.04 7.72 -51.94 -0.40 0.64 16 35 H 0.03 0.52 7.79 -51.93 -0.40 0.12 16 36 H 0.04 0.68 4.69 -51.93 -0.24 0.44 16 37 H 0.07 1.48 6.34 -51.93 -0.33 1.15 16 38 H 0.04 0.61 7.54 -51.93 -0.39 0.22 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.17 6.79 -51.93 -0.35 0.82 16 41 H 0.05 0.86 7.28 -51.93 -0.38 0.48 16 42 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 43 H 0.01 0.16 7.57 -51.94 -0.39 -0.23 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.13 1.06 7.79 -52.49 -0.41 0.65 16 46 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 353.65 15.07 5.33 5.33 Total: -1.00 -29.49 353.65 -8.41 -37.90 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -7.37 Total: -1.16 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: -1.67 Total: -22.59 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: -0.06 Total: -34.67 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.67 Total: 16.88 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.49 -8.41 -37.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578959679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.554 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds