Wall clock time and date at job start Fri Apr 10 2020 20:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30836 * 125.90192 * 2 1 4 4 N 1.40084 * 108.20904 * 180.14351 * 3 2 1 5 5 H 0.97001 * 126.04219 * 179.85882 * 4 3 2 6 6 C 1.34947 * 107.92164 * 359.58781 * 4 3 2 7 7 C 1.35317 * 107.74962 * 0.24402 * 6 4 3 8 8 C 1.50698 * 126.04222 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46992 * 265.02374 * 8 7 6 10 10 C 1.53003 * 109.47090 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.47132 * 179.97438 * 10 9 8 12 12 C 1.34779 * 120.00006 * 180.02562 * 11 10 9 13 13 O 1.21278 * 119.99656 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99699 * 179.97438 * 12 11 10 15 15 C 1.53003 * 109.46824 * 179.97438 * 14 12 11 16 16 C 1.53000 * 109.47090 * 180.02562 * 15 14 12 17 17 C 1.53003 * 109.47090 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.46824 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00536 * 359.97438 * 18 17 16 20 20 C 1.37883 * 119.99617 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00005 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99971 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47200 * 59.99648 * 22 20 18 24 24 H 1.48501 * 109.47376 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46963 * 299.99786 * 22 20 18 26 26 H 1.08995 * 109.48061 * 270.30456 * 1 2 3 27 27 H 1.09003 * 109.47004 * 30.31144 * 1 2 3 28 28 H 1.09005 * 109.47121 * 150.30115 * 1 2 3 29 29 H 1.08007 * 126.12498 * 180.26712 * 6 4 3 30 30 H 1.08996 * 109.47131 * 25.02274 * 8 7 6 31 31 H 1.09002 * 109.47409 * 145.02425 * 8 7 6 32 32 H 1.08996 * 109.47101 * 299.99919 * 9 8 7 33 33 H 1.08995 * 109.47312 * 60.00009 * 9 8 7 34 34 H 1.08996 * 109.47142 * 299.99967 * 10 9 8 35 35 H 1.09000 * 109.46574 * 60.00134 * 10 9 8 36 36 H 0.97005 * 119.99897 * 359.97438 * 11 10 9 37 37 H 1.08996 * 109.47296 * 299.99737 * 14 12 11 38 38 H 1.09000 * 109.47373 * 60.00488 * 14 12 11 39 39 H 1.08996 * 109.47142 * 300.00043 * 15 14 12 40 40 H 1.08995 * 109.46976 * 59.99953 * 15 14 12 41 41 H 1.08996 * 109.47101 * 299.99992 * 16 15 14 42 42 H 1.09002 * 109.47003 * 59.99875 * 16 15 14 43 43 H 1.08996 * 109.47142 * 299.99967 * 17 16 15 44 44 H 1.08995 * 109.46976 * 59.99877 * 17 16 15 45 45 H 0.97008 * 120.00065 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0033 5 1 4.3908 1.2078 -0.0060 6 6 3.6141 -0.7154 0.0039 7 6 2.3270 -1.1331 0.0061 8 6 1.8598 -2.5658 0.0143 9 6 1.5830 -3.0201 -1.4202 10 6 1.1092 -4.4749 -1.4119 11 7 0.8435 -4.9098 -2.7854 12 6 0.4123 -6.1643 -3.0236 13 8 0.2447 -6.9333 -2.1009 14 6 0.1385 -6.6114 -4.4365 15 6 -0.3351 -8.0662 -4.4282 16 6 -0.6125 -8.5204 -5.8627 17 6 -1.0856 -9.9755 -5.8545 18 6 -1.3594 -10.4225 -7.2673 19 1 -1.2113 -9.7374 -8.0889 20 6 -1.8000 -11.7061 -7.5110 21 7 -1.9809 -12.5403 -6.5106 22 14 -2.1388 -12.2606 -9.2624 23 1 -0.8950 -12.1496 -10.0661 24 1 -2.5980 -13.6728 -9.2545 25 1 -3.1921 -11.4004 -9.8590 26 1 -0.3635 0.0055 1.0275 27 1 -0.3633 0.8872 -0.5187 28 1 -0.3634 -0.8927 -0.5092 29 1 4.4891 -1.3486 0.0077 30 1 2.6323 -3.1974 0.4528 31 1 0.9464 -2.6467 0.6037 32 1 0.8104 -2.3885 -1.8587 33 1 2.4962 -2.9392 -2.0096 34 1 1.8820 -5.1062 -0.9736 35 1 0.1960 -4.5562 -0.8224 36 1 0.9773 -4.2946 -3.5234 37 1 -0.6345 -5.9797 -4.8741 38 1 1.0513 -6.5303 -5.0266 39 1 0.4381 -8.6976 -3.9907 40 1 -1.2478 -8.1478 -3.8380 41 1 -1.3856 -7.8891 -6.3006 42 1 0.3005 -8.4389 -6.4526 43 1 -0.3122 -10.6065 -5.4167 44 1 -1.9984 -10.0574 -5.2645 45 1 -2.2905 -13.4435 -6.6820 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588337230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:06:20 Heat of formation + Delta-G solvation = -9.454859 kcal Electronic energy + Delta-G solvation = -21697.005183 eV Core-core repulsion = 18328.420501 eV Total energy + Delta-G solvation = -3368.584681 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68183 -39.61491 -36.28670 -34.82600 -33.93466 -32.88695 -32.55531 -30.37833 -29.36640 -28.30975 -26.35608 -25.02740 -22.56435 -21.86936 -21.34219 -20.19830 -19.91766 -19.76888 -18.15703 -16.71279 -16.21465 -16.09333 -15.83983 -15.32904 -15.32119 -14.64559 -14.43300 -13.97230 -13.85447 -13.37081 -13.31094 -13.21313 -12.76798 -12.64219 -12.52093 -12.40549 -12.02692 -11.75804 -11.63847 -11.54386 -11.22128 -10.93948 -10.80160 -10.51242 -10.48378 -10.36812 -9.79490 -9.77180 -9.57244 -9.18850 -9.10640 -8.96602 -8.86952 -8.27469 -5.92383 -3.94876 1.45348 2.26994 2.45223 2.79497 3.21259 3.37196 3.41491 3.43802 4.22153 4.34373 4.51225 4.54416 4.67077 4.84990 4.91715 4.98456 5.08343 5.21471 5.24323 5.32359 5.38423 5.41508 5.43319 5.51550 5.55394 5.57485 5.60274 5.86821 5.91469 5.94858 6.18656 6.25185 6.34955 6.39641 6.59588 6.83541 6.88555 7.06639 7.23950 7.25184 7.49786 7.77073 7.93774 8.09243 8.33198 8.51018 9.12660 9.68481 11.18834 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.045691 B = 0.001681 C = 0.001671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.658942 B =16650.898901 C =16750.730165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.083 3.917 3 N -0.298 5.298 4 N -0.480 5.480 5 H 0.439 0.561 6 C 0.061 3.939 7 C -0.232 4.232 8 C -0.038 4.038 9 C -0.125 4.125 10 C 0.117 3.883 11 N -0.740 5.740 12 C 0.511 3.489 13 O -0.536 6.536 14 C -0.139 4.139 15 C -0.103 4.103 16 C -0.110 4.110 17 C 0.019 3.981 18 C -0.521 4.521 19 H 0.054 0.946 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.892 3.108 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.176 0.824 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.399 0.601 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.333 28.059 14.056 33.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.084 4.084 3 N -0.122 5.122 4 N -0.187 5.187 5 H 0.283 0.717 6 C -0.087 4.087 7 C -0.244 4.244 8 C -0.077 4.077 9 C -0.163 4.163 10 C -0.007 4.007 11 N -0.393 5.393 12 C 0.298 3.702 13 O -0.412 6.412 14 C -0.179 4.179 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.018 4.018 18 C -0.559 4.559 19 H 0.072 0.928 20 C -0.146 4.146 21 N -0.534 5.534 22 Si 0.720 3.280 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.096 0.904 27 H 0.092 0.908 28 H 0.099 0.901 29 H 0.193 0.807 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.233 0.767 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 11.186 28.562 14.781 34.050 hybrid contribution 0.494 -0.584 -1.311 1.518 sum 11.680 27.978 13.470 33.176 Atomic orbital electron populations 1.20231 0.86611 1.03572 1.03192 1.22321 0.97075 0.90231 0.98823 1.77297 0.86765 1.22673 1.25456 1.46194 1.07305 1.05532 1.59684 0.71699 1.22436 0.99392 0.85311 1.01521 1.19984 0.91769 0.96316 1.16316 1.19762 1.01674 0.90183 0.96057 1.21796 1.01920 0.94848 0.97705 1.21336 1.01043 0.94497 0.83811 1.46114 1.69911 1.14258 1.09059 1.21094 0.75750 0.81011 0.92349 1.90704 1.51035 1.53118 1.46372 1.21792 1.03204 1.00420 0.92485 1.21447 1.01660 0.91884 0.99147 1.21652 0.99830 1.00147 0.93181 1.19096 0.96445 0.89458 0.96759 1.21256 1.44412 0.97191 0.93087 0.92813 1.25042 0.95756 0.96881 0.96878 1.69966 1.46697 1.06138 1.30636 0.86672 0.78605 0.77577 0.85190 1.20319 1.21328 1.20303 0.90362 0.90834 0.90118 0.80706 0.90958 0.90706 0.91231 0.91402 0.91661 0.91581 0.76720 0.89189 0.89229 0.91842 0.91814 0.93492 0.93514 0.96584 0.96577 0.93014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.21 36.00 0.37 -0.08 16 2 C 0.08 0.66 7.22 -82.41 -0.59 0.07 16 3 N -0.30 -2.74 12.70 33.67 0.43 -2.31 16 4 N -0.48 -2.97 7.36 30.45 0.22 -2.75 16 5 H 0.44 1.35 8.96 -182.61 -1.64 -0.29 16 6 C 0.06 0.33 11.90 -17.22 -0.21 0.13 16 7 C -0.23 -1.58 5.35 -105.05 -0.56 -2.14 16 8 C -0.04 -0.21 5.33 -27.88 -0.15 -0.36 16 9 C -0.12 -0.73 5.31 -26.73 -0.14 -0.87 16 10 C 0.12 1.00 5.67 -4.04 -0.02 0.97 16 11 N -0.74 -7.17 5.56 -60.30 -0.33 -7.51 16 12 C 0.51 7.10 7.83 -10.99 -0.09 7.02 16 13 O -0.54 -9.86 15.98 5.56 0.09 -9.77 16 14 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 15 C -0.10 -1.87 4.50 -26.73 -0.12 -2.00 16 16 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 17 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 18 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 19 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 22 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.38 7.71 -51.93 -0.40 -0.02 16 29 H 0.18 0.40 8.06 -52.48 -0.42 -0.02 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.07 0.40 7.88 -51.93 -0.41 -0.01 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.40 2.73 8.47 -40.82 -0.35 2.38 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -36.85 378.60 -9.63 -46.48 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -9.09 Total: -4.68 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.36 Total: -15.24 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 1.05 Total: -39.48 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -36.85 -9.63 -46.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588337230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.021 kcal (2) G-P(sol) polarization free energy of solvation -36.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds