Wall clock time and date at job start Fri Apr 10 2020 20:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99955 * 2 1 4 4 C 1.52999 * 109.47023 * 180.62806 * 3 2 1 5 5 N 1.46909 * 109.46955 * 67.83898 * 4 3 2 6 6 C 1.46900 * 111.00007 * 284.97727 * 5 4 3 7 7 C 1.50694 * 109.47061 * 172.30427 * 6 5 4 8 8 H 1.07996 * 120.00415 * 354.46912 * 7 6 5 9 9 C 1.37879 * 119.99980 * 174.47507 * 7 6 5 10 10 N 1.31513 * 120.00005 * 353.70354 * 9 7 6 11 11 Si 1.86799 * 120.00016 * 173.70422 * 9 7 6 12 12 H 1.48497 * 109.47452 * 65.00421 * 11 9 7 13 13 H 1.48503 * 109.46963 * 185.00325 * 11 9 7 14 14 H 1.48503 * 109.47006 * 305.00215 * 11 9 7 15 15 C 1.46899 * 111.00200 * 161.02608 * 5 4 3 16 16 C 1.53006 * 109.46642 * 293.95335 * 15 5 4 17 17 H 1.08997 * 109.46968 * 60.00524 * 16 15 5 18 18 O 1.42899 * 109.47245 * 299.99834 * 16 15 5 19 19 C 1.53001 * 109.46947 * 180.02562 * 16 15 5 20 20 C 1.50696 * 109.47158 * 185.00378 * 19 16 15 21 21 C 1.38228 * 120.00405 * 89.99977 * 20 19 16 22 22 C 1.38241 * 120.00202 * 180.02562 * 21 20 19 23 23 C 1.38235 * 119.99810 * 0.02562 * 22 21 20 24 24 C 1.38238 * 119.99919 * 0.25476 * 23 22 21 25 25 C 1.38235 * 119.99607 * 270.01945 * 20 19 16 26 26 H 1.09000 * 109.47581 * 183.62647 * 1 2 3 27 27 H 1.08994 * 109.47072 * 303.63116 * 1 2 3 28 28 H 1.09002 * 109.47233 * 63.62734 * 1 2 3 29 29 H 1.09008 * 109.47219 * 60.63466 * 3 2 1 30 30 H 1.08994 * 109.47383 * 300.62901 * 3 2 1 31 31 H 1.09001 * 109.47270 * 307.84210 * 4 3 2 32 32 H 1.08993 * 109.47320 * 187.83568 * 4 3 2 33 33 H 1.09000 * 109.47385 * 292.30434 * 6 5 4 34 34 H 1.09004 * 109.47265 * 52.30402 * 6 5 4 35 35 H 0.96999 * 120.00303 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47011 * 173.95885 * 15 5 4 37 37 H 1.09000 * 109.47193 * 53.94756 * 15 5 4 38 38 H 0.96699 * 114.00139 * 300.00586 * 18 16 15 39 39 H 1.09003 * 109.47235 * 64.99793 * 19 16 15 40 40 H 1.09002 * 109.47166 * 305.00068 * 19 16 15 41 41 H 1.08002 * 120.00049 * 359.97438 * 21 20 19 42 42 H 1.07995 * 119.99884 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.99865 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.99532 * 179.72106 * 24 23 22 45 45 H 1.08006 * 120.00242 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0158 5 7 3.9693 0.6309 -1.3055 6 6 3.6952 -0.8105 -1.3785 7 6 3.9762 -1.3052 -2.7739 8 1 4.2371 -0.6043 -3.5530 9 6 3.8999 -2.6526 -3.0561 10 7 3.7046 -3.5178 -2.0851 11 14 4.0741 -3.2493 -4.8176 12 1 5.4444 -2.9533 -5.3074 13 1 3.8354 -4.7141 -4.8699 14 1 3.0809 -2.5549 -5.6760 15 6 5.3916 0.9090 -1.5461 16 6 5.5956 2.4165 -1.7100 17 1 5.2739 2.9275 -0.8026 18 8 4.8247 2.8838 -2.8188 19 6 7.0768 2.7063 -1.9613 20 6 7.2975 4.1965 -2.0004 21 6 7.5987 4.8814 -0.8381 22 6 7.8006 6.2485 -0.8740 23 6 7.7009 6.9307 -2.0722 24 6 7.3940 6.2466 -3.2335 25 6 7.1984 4.8786 -3.1987 26 1 -0.3634 -1.0256 0.0650 27 1 -0.3633 0.5691 0.8556 28 1 -0.3634 0.4565 -0.9207 29 1 1.6976 1.8424 0.8957 30 1 1.6797 1.8503 -0.8842 31 1 3.8559 0.5238 0.7896 32 1 3.9794 2.1701 0.1242 33 1 4.3342 -1.3382 -0.6704 34 1 2.6497 -0.9945 -1.1314 35 1 3.6513 -4.4657 -2.2835 36 1 5.7132 0.3981 -2.4535 37 1 5.9796 0.5527 -0.7003 38 1 5.0575 2.4710 -3.6616 39 1 7.3760 2.2694 -2.9140 40 1 7.6732 2.2717 -1.1591 41 1 7.6754 4.3486 0.0982 42 1 8.0355 6.7837 0.0342 43 1 7.8582 7.9988 -2.1001 44 1 7.3116 6.7803 -4.1688 45 1 6.9632 4.3434 -4.1069 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590698190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:06:24 Heat of formation + Delta-G solvation = -68.427621 kcal Electronic energy + Delta-G solvation = -23886.418087 eV Core-core repulsion = 20482.983404 eV Total energy + Delta-G solvation = -3403.434683 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.44423 -38.07911 -37.05700 -35.20325 -32.70701 -32.45550 -30.87819 -29.87693 -28.89852 -26.76875 -25.73755 -24.61295 -22.57133 -22.17811 -21.92284 -20.80328 -19.73023 -16.92248 -16.45995 -15.98565 -15.84637 -15.62913 -15.35047 -14.98108 -14.88826 -14.59805 -14.25514 -14.06596 -13.65499 -13.41086 -13.07160 -12.76440 -12.68444 -12.40001 -11.92574 -11.74802 -11.54691 -11.20670 -11.12015 -11.05739 -10.94373 -10.89197 -10.72382 -10.66791 -10.41622 -10.24107 -9.85752 -9.44139 -9.19538 -8.90753 -8.78546 -8.56880 -8.28364 -7.08432 -5.91980 -3.91101 1.37221 1.41571 3.35998 3.41426 3.44445 3.78808 4.37428 4.48443 4.62824 4.81874 4.90314 4.98642 5.04576 5.10514 5.28941 5.41758 5.42941 5.51388 5.57603 5.58606 5.69061 5.75598 5.81599 5.85243 5.87548 5.93774 5.99717 6.06561 6.11264 6.11489 6.26504 6.36939 6.46228 6.50004 6.50437 6.65171 6.74875 7.02000 7.54213 7.60959 7.76666 7.89314 8.15345 8.32108 8.40908 8.69715 9.16959 9.70395 11.18504 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.004192 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.897141 B = 6677.738331 C = 8080.047483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.071 3.929 4 C 0.053 3.947 5 N -0.521 5.521 6 C 0.182 3.818 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.056 3.944 10 N -0.896 5.896 11 Si 0.891 3.109 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.031 3.969 16 C 0.118 3.882 17 H 0.088 0.912 18 O -0.545 6.545 19 C -0.118 4.118 20 C -0.065 4.065 21 C -0.122 4.122 22 C -0.122 4.122 23 C -0.132 4.132 24 C -0.121 4.121 25 C -0.104 4.104 26 H 0.080 0.920 27 H 0.029 0.971 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.055 0.945 31 H 0.031 0.969 32 H 0.071 0.929 33 H -0.012 1.012 34 H 0.065 0.935 35 H 0.259 0.741 36 H 0.089 0.911 37 H 0.024 0.976 38 H 0.370 0.630 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.917 16.735 2.703 17.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.006 4.006 4 C -0.076 4.076 5 N -0.246 5.246 6 C 0.058 3.942 7 C -0.544 4.544 8 H 0.077 0.923 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.720 3.280 12 H -0.206 1.206 13 H -0.215 1.215 14 H -0.202 1.202 15 C -0.098 4.098 16 C 0.058 3.942 17 H 0.106 0.894 18 O -0.349 6.349 19 C -0.156 4.156 20 C -0.065 4.065 21 C -0.140 4.140 22 C -0.140 4.140 23 C -0.150 4.150 24 C -0.139 4.139 25 C -0.122 4.122 26 H 0.098 0.902 27 H 0.048 0.952 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.049 0.951 32 H 0.089 0.911 33 H 0.006 0.994 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.043 0.957 38 H 0.216 0.784 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.445 16.947 2.839 17.749 hybrid contribution 0.645 -0.977 -0.631 1.330 sum 5.090 15.970 2.208 16.906 Atomic orbital electron populations 1.22643 0.82717 1.02112 0.98945 1.88151 1.18331 1.27277 1.94927 1.22493 0.94111 0.85022 0.98953 1.22092 0.93628 0.99114 0.92729 1.62111 1.15224 1.19307 1.27915 1.20091 0.98593 0.79377 0.96148 1.21149 1.46291 0.91635 0.95331 0.92335 1.24950 0.95872 0.96841 0.96834 1.69975 1.50474 1.01902 1.31214 0.86677 0.78377 0.77483 0.85502 1.20595 1.21488 1.20193 1.22697 0.90888 0.94270 1.01968 1.21946 0.87518 0.94476 0.90272 0.89382 1.86541 1.63061 1.67190 1.18117 1.21421 0.98833 0.91745 1.03650 1.19818 0.97657 0.95723 0.93278 1.21056 1.00681 0.94420 0.97862 1.21082 1.00667 0.94448 0.97799 1.21079 1.01303 0.99586 0.93011 1.21126 1.00026 0.94550 0.98172 1.21039 0.99221 0.94225 0.97738 0.90156 0.95243 0.94462 0.94561 0.92672 0.95114 0.91092 0.99384 0.91740 0.93109 0.89236 0.95746 0.78355 0.90389 0.90241 0.86316 0.86446 0.86564 0.86385 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.37 -7.48 7.79 -35.23 -0.27 -7.76 16 3 C 0.07 1.26 6.23 37.16 0.23 1.49 16 4 C 0.05 0.99 5.39 -3.82 -0.02 0.97 16 5 N -0.52 -11.18 4.32 -236.07 -1.02 -12.20 16 6 C 0.18 4.83 4.51 -4.98 -0.02 4.81 16 7 C -0.51 -14.18 8.22 -34.44 -0.28 -14.47 16 8 H 0.06 1.60 7.25 -52.49 -0.38 1.22 16 9 C 0.06 1.60 5.45 -17.82 -0.10 1.50 16 10 N -0.90 -27.04 13.28 55.43 0.74 -26.31 16 11 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 C 0.03 0.57 4.47 -3.82 -0.02 0.55 16 16 C 0.12 1.76 2.87 -26.73 -0.08 1.68 16 17 H 0.09 1.34 6.25 -51.93 -0.32 1.01 16 18 O -0.54 -8.73 12.70 -35.23 -0.45 -9.18 16 19 C -0.12 -1.47 5.03 -27.88 -0.14 -1.61 16 20 C -0.06 -0.80 4.97 -104.63 -0.52 -1.32 16 21 C -0.12 -1.41 9.70 -39.58 -0.38 -1.80 16 22 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 23 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 24 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 25 C -0.10 -1.24 9.40 -39.58 -0.37 -1.61 16 26 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.03 0.60 8.01 -51.93 -0.42 0.18 16 32 H 0.07 1.14 5.89 -51.93 -0.31 0.83 16 33 H -0.01 -0.34 8.11 -51.93 -0.42 -0.76 16 34 H 0.06 1.84 5.14 -51.93 -0.27 1.58 16 35 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 36 H 0.09 1.81 6.59 -51.93 -0.34 1.47 16 37 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 38 H 0.37 5.15 9.04 45.56 0.41 5.56 16 39 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 40 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 41 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 43 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -32.55 366.21 -8.96 -41.51 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -6.67 Total: 5.04 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -1.78 Total: -13.32 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.28 Total: -38.51 kcal Atomic # 8 Polarization: -16.21 SS G_CDS: -0.72 Total: -16.93 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.55 -8.96 -41.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590698190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.922 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds