Wall clock time and date at job start Fri Apr 10 2020 20:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99955 * 2 1 4 4 C 1.52999 * 109.47023 * 180.62806 * 3 2 1 5 5 N 1.46909 * 109.46955 * 67.83898 * 4 3 2 6 6 C 1.46900 * 111.00007 * 284.97727 * 5 4 3 7 7 C 1.50694 * 109.47061 * 172.30427 * 6 5 4 8 8 H 1.07996 * 120.00415 * 354.46912 * 7 6 5 9 9 C 1.37879 * 119.99980 * 174.47507 * 7 6 5 10 10 N 1.31513 * 120.00005 * 353.70354 * 9 7 6 11 11 Si 1.86799 * 120.00016 * 173.70422 * 9 7 6 12 12 H 1.48497 * 109.47452 * 65.00421 * 11 9 7 13 13 H 1.48503 * 109.46963 * 185.00325 * 11 9 7 14 14 H 1.48503 * 109.47006 * 305.00215 * 11 9 7 15 15 C 1.46899 * 111.00200 * 161.02608 * 5 4 3 16 16 C 1.53006 * 109.46642 * 293.95335 * 15 5 4 17 17 H 1.08997 * 109.46968 * 60.00524 * 16 15 5 18 18 O 1.42899 * 109.47245 * 299.99834 * 16 15 5 19 19 C 1.53001 * 109.46947 * 180.02562 * 16 15 5 20 20 C 1.50696 * 109.47158 * 185.00378 * 19 16 15 21 21 C 1.38228 * 120.00405 * 89.99977 * 20 19 16 22 22 C 1.38241 * 120.00202 * 180.02562 * 21 20 19 23 23 C 1.38235 * 119.99810 * 0.02562 * 22 21 20 24 24 C 1.38238 * 119.99919 * 0.25476 * 23 22 21 25 25 C 1.38235 * 119.99607 * 270.01945 * 20 19 16 26 26 H 1.09000 * 109.47581 * 183.62647 * 1 2 3 27 27 H 1.08994 * 109.47072 * 303.63116 * 1 2 3 28 28 H 1.09002 * 109.47233 * 63.62734 * 1 2 3 29 29 H 1.09008 * 109.47219 * 60.63466 * 3 2 1 30 30 H 1.08994 * 109.47383 * 300.62901 * 3 2 1 31 31 H 1.09001 * 109.47270 * 307.84210 * 4 3 2 32 32 H 1.08993 * 109.47320 * 187.83568 * 4 3 2 33 33 H 1.09000 * 109.47385 * 292.30434 * 6 5 4 34 34 H 1.09004 * 109.47265 * 52.30402 * 6 5 4 35 35 H 0.96999 * 120.00303 * 180.02562 * 10 9 7 36 36 H 1.08997 * 109.47011 * 173.95885 * 15 5 4 37 37 H 1.09000 * 109.47193 * 53.94756 * 15 5 4 38 38 H 0.96699 * 114.00139 * 300.00586 * 18 16 15 39 39 H 1.09003 * 109.47235 * 64.99793 * 19 16 15 40 40 H 1.09002 * 109.47166 * 305.00068 * 19 16 15 41 41 H 1.08002 * 120.00049 * 359.97438 * 21 20 19 42 42 H 1.07995 * 119.99884 * 179.97438 * 22 21 20 43 43 H 1.07997 * 119.99865 * 179.97438 * 23 22 21 44 44 H 1.07998 * 119.99532 * 179.72106 * 24 23 22 45 45 H 1.08006 * 120.00242 * 359.97438 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0158 5 7 3.9693 0.6309 -1.3055 6 6 3.6952 -0.8105 -1.3785 7 6 3.9762 -1.3052 -2.7739 8 1 4.2371 -0.6043 -3.5530 9 6 3.8999 -2.6526 -3.0561 10 7 3.7046 -3.5178 -2.0851 11 14 4.0741 -3.2493 -4.8176 12 1 5.4444 -2.9533 -5.3074 13 1 3.8354 -4.7141 -4.8699 14 1 3.0809 -2.5549 -5.6760 15 6 5.3916 0.9090 -1.5461 16 6 5.5956 2.4165 -1.7100 17 1 5.2739 2.9275 -0.8026 18 8 4.8247 2.8838 -2.8188 19 6 7.0768 2.7063 -1.9613 20 6 7.2975 4.1965 -2.0004 21 6 7.5987 4.8814 -0.8381 22 6 7.8006 6.2485 -0.8740 23 6 7.7009 6.9307 -2.0722 24 6 7.3940 6.2466 -3.2335 25 6 7.1984 4.8786 -3.1987 26 1 -0.3634 -1.0256 0.0650 27 1 -0.3633 0.5691 0.8556 28 1 -0.3634 0.4565 -0.9207 29 1 1.6976 1.8424 0.8957 30 1 1.6797 1.8503 -0.8842 31 1 3.8559 0.5238 0.7896 32 1 3.9794 2.1701 0.1242 33 1 4.3342 -1.3382 -0.6704 34 1 2.6497 -0.9945 -1.1314 35 1 3.6513 -4.4657 -2.2835 36 1 5.7132 0.3981 -2.4535 37 1 5.9796 0.5527 -0.7003 38 1 5.0575 2.4710 -3.6616 39 1 7.3760 2.2694 -2.9140 40 1 7.6732 2.2717 -1.1591 41 1 7.6754 4.3486 0.0982 42 1 8.0355 6.7837 0.0342 43 1 7.8582 7.9988 -2.1001 44 1 7.3116 6.7803 -4.1688 45 1 6.9632 4.3434 -4.1069 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590698190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:06:23 Heat of formation + Delta-G solvation = -90.789364 kcal Electronic energy + Delta-G solvation = -23887.387765 eV Core-core repulsion = 20482.983404 eV Total energy + Delta-G solvation = -3404.404361 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.40281 -39.47694 -38.37502 -36.75377 -34.59608 -33.68160 -31.68398 -31.25912 -30.44778 -28.37796 -27.04132 -26.19674 -23.89778 -23.41923 -23.21583 -21.80586 -21.34998 -18.53947 -17.78770 -17.37075 -17.24457 -16.94763 -16.69638 -16.51401 -15.98800 -15.83876 -15.60990 -15.42982 -15.13198 -14.57094 -14.30444 -14.17438 -13.84373 -13.60213 -13.42306 -13.30101 -12.90704 -12.77368 -12.60298 -12.51165 -12.47008 -12.30575 -12.01837 -11.97114 -11.85158 -11.75816 -11.56982 -11.03071 -10.79405 -10.56827 -10.28284 -9.72932 -9.46441 -8.87334 -8.11513 -6.19014 0.53240 0.59331 1.41493 1.45291 1.53057 2.44238 2.92273 3.02392 3.21793 3.27537 3.71754 3.82634 4.02140 4.15744 4.21895 4.23955 4.28465 4.36264 4.38960 4.45796 4.48236 4.56269 4.58538 4.62797 4.72631 4.79277 4.81646 4.87235 4.92698 4.96777 4.98308 5.21008 5.25403 5.30995 5.37889 5.64583 5.65658 5.69829 5.74883 5.82169 6.21018 6.21457 6.38279 6.52166 6.74631 6.97307 7.02096 7.48182 8.99290 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.013845 B = 0.004192 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.897141 B = 6677.738331 C = 8080.047483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.410 6.410 3 C 0.072 3.928 4 C 0.050 3.950 5 N -0.525 5.525 6 C 0.200 3.800 7 C -0.517 4.517 8 H 0.062 0.938 9 C 0.001 3.999 10 N -0.935 5.935 11 Si 0.963 3.037 12 H -0.267 1.267 13 H -0.287 1.287 14 H -0.269 1.269 15 C 0.032 3.968 16 C 0.135 3.865 17 H 0.091 0.909 18 O -0.556 6.556 19 C -0.109 4.109 20 C -0.081 4.081 21 C -0.135 4.135 22 C -0.128 4.128 23 C -0.135 4.135 24 C -0.130 4.130 25 C -0.119 4.119 26 H 0.078 0.922 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.017 0.983 32 H 0.101 0.899 33 H -0.054 1.054 34 H 0.043 0.957 35 H 0.260 0.740 36 H 0.069 0.931 37 H 0.021 0.979 38 H 0.378 0.622 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.128 0.872 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.304 18.918 2.097 19.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.330 6.330 3 C -0.005 4.005 4 C -0.078 4.078 5 N -0.249 5.249 6 C 0.074 3.926 7 C -0.556 4.556 8 H 0.080 0.920 9 C -0.197 4.197 10 N -0.576 5.576 11 Si 0.788 3.212 12 H -0.192 1.192 13 H -0.213 1.213 14 H -0.194 1.194 15 C -0.096 4.096 16 C 0.076 3.924 17 H 0.109 0.891 18 O -0.362 6.362 19 C -0.147 4.147 20 C -0.081 4.081 21 C -0.153 4.153 22 C -0.146 4.146 23 C -0.153 4.153 24 C -0.148 4.148 25 C -0.137 4.137 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.035 0.965 32 H 0.119 0.881 33 H -0.036 1.036 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.226 0.774 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.146 0.854 42 H 0.157 0.843 43 H 0.158 0.842 44 H 0.154 0.846 45 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 4.837 19.160 2.228 19.886 hybrid contribution 0.518 -1.578 -0.383 1.705 sum 5.355 17.582 1.844 18.472 Atomic orbital electron populations 1.22797 0.80690 1.02751 1.00496 1.88079 1.20757 1.28946 1.95230 1.22579 0.93147 0.84388 1.00386 1.22253 0.94860 0.99950 0.90712 1.62045 1.17100 1.15920 1.29855 1.19703 0.96328 0.82139 0.94461 1.21476 1.45950 0.92079 0.96070 0.91973 1.25860 0.95425 0.97022 1.01342 1.70128 1.51639 1.02195 1.33654 0.85534 0.78979 0.76785 0.79871 1.19186 1.21272 1.19430 1.22744 0.89154 0.97010 1.00730 1.21748 0.89259 0.91222 0.90221 0.89144 1.86509 1.63646 1.67291 1.18745 1.21277 0.96776 0.92533 1.04099 1.19826 0.99022 0.95301 0.93967 1.21290 1.00759 0.95176 0.98038 1.21409 1.00036 0.94237 0.98919 1.21442 1.00263 1.00899 0.92695 1.21423 0.99680 0.94325 0.99363 1.21223 0.99682 0.95000 0.97844 0.90323 0.92124 0.94127 0.90968 0.93183 0.96489 0.88085 1.03635 0.93920 0.93082 0.91270 0.96110 0.77425 0.90082 0.89562 0.85361 0.84277 0.84208 0.84604 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.41 -16.86 7.79 -148.98 -1.16 -18.02 16 3 C 0.07 2.48 6.23 71.98 0.45 2.93 16 4 C 0.05 1.87 5.39 86.30 0.47 2.33 16 5 N -0.53 -22.94 4.32 -900.78 -3.89 -26.83 16 6 C 0.20 11.01 4.51 85.56 0.39 11.40 16 7 C -0.52 -29.72 8.22 25.60 0.21 -29.51 16 8 H 0.06 3.44 7.25 -2.91 -0.02 3.42 16 9 C 0.00 0.05 5.45 84.66 0.46 0.51 16 10 N -0.94 -58.04 13.28 21.45 0.28 -57.76 16 11 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 C 0.03 1.21 4.47 86.31 0.39 1.60 16 16 C 0.14 3.93 2.87 30.60 0.09 4.02 16 17 H 0.09 2.60 6.25 -2.39 -0.01 2.59 16 18 O -0.56 -17.28 12.70 -148.98 -1.89 -19.17 16 19 C -0.11 -2.60 5.03 29.85 0.15 -2.45 16 20 C -0.08 -1.89 4.97 -19.87 -0.10 -1.99 16 21 C -0.13 -2.86 9.70 22.27 0.22 -2.65 16 22 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 23 C -0.14 -2.44 10.05 22.27 0.22 -2.21 16 24 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 25 C -0.12 -2.67 9.40 22.27 0.21 -2.46 16 26 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.02 0.67 8.01 -2.39 -0.02 0.65 16 32 H 0.10 3.09 5.89 -2.39 -0.01 3.07 16 33 H -0.05 -3.36 8.11 -2.39 -0.02 -3.38 16 34 H 0.04 2.56 5.14 -2.38 -0.01 2.55 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.07 2.86 6.59 -2.39 -0.02 2.85 16 37 H 0.02 0.79 8.12 -2.39 -0.02 0.77 16 38 H 0.38 10.27 9.04 -74.06 -0.67 9.60 16 39 H 0.08 1.87 8.09 -2.39 -0.02 1.85 16 40 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 41 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 42 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 43 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 44 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 45 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -71.57 366.21 0.50 -71.06 By element: Atomic # 1 Polarization: 24.32 SS G_CDS: 0.29 Total: 24.61 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: 4.84 Total: -20.83 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -3.60 Total: -84.59 kcal Atomic # 8 Polarization: -34.14 SS G_CDS: -3.05 Total: -37.20 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -71.57 0.50 -71.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590698190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.727 kcal (2) G-P(sol) polarization free energy of solvation -71.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds