Wall clock time and date at job start Fri Apr 10 2020 20:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47473 * 2 1 4 4 C 1.50704 * 109.47284 * 240.00236 * 2 1 3 5 5 H 1.08000 * 120.00288 * 240.00119 * 4 2 1 6 6 C 1.37880 * 120.00071 * 59.99616 * 4 2 1 7 7 N 1.31522 * 119.99800 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00414 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47160 * 89.99914 * 8 6 4 10 10 H 1.48492 * 109.47084 * 210.00267 * 8 6 4 11 11 H 1.48505 * 109.46686 * 330.00324 * 8 6 4 12 12 C 1.52999 * 109.47621 * 120.00406 * 2 1 3 13 13 N 1.46504 * 109.47036 * 300.00116 * 12 2 1 14 14 C 1.34768 * 120.00355 * 179.72227 * 13 12 2 15 15 O 1.21587 * 119.99731 * 355.29211 * 14 13 12 16 16 N 1.34776 * 120.00394 * 175.29057 * 14 13 12 17 17 C 1.46928 * 120.62874 * 5.22605 * 16 14 13 18 18 C 1.53187 * 108.77730 * 126.36878 * 17 16 14 19 19 C 1.53039 * 109.31301 * 54.63266 * 18 17 16 20 20 C 1.53032 * 109.54002 * 298.63530 * 19 18 17 21 21 C 1.52998 * 109.50248 * 181.34837 * 20 19 18 22 22 C 1.47207 * 109.50019 * 301.41553 * 20 19 18 23 23 N 6.93248 * 70.50461 * 110.89697 * 2 1 3 24 24 C 1.46926 * 120.63194 * 184.94232 * 16 14 13 25 25 H 1.09000 * 109.47011 * 299.99936 * 1 2 3 26 26 H 1.09003 * 109.47389 * 59.99910 * 1 2 3 27 27 H 1.08997 * 109.47115 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47275 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47341 * 300.00116 * 3 2 1 30 30 H 1.09000 * 109.46950 * 60.00026 * 3 2 1 31 31 H 0.96998 * 119.99779 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47623 * 179.97438 * 12 2 1 33 33 H 1.09005 * 109.47131 * 59.99324 * 12 2 1 34 34 H 0.97009 * 119.99701 * 359.97438 * 13 12 2 35 35 H 1.09006 * 109.58636 * 246.15958 * 17 16 14 36 36 H 1.08999 * 109.58431 * 6.43391 * 17 16 14 37 37 H 1.09004 * 109.50017 * 174.58668 * 18 17 16 38 38 H 1.09001 * 109.49759 * 294.68378 * 18 17 16 39 39 H 1.09004 * 109.45892 * 58.65803 * 19 18 17 40 40 H 1.09001 * 109.45919 * 178.62362 * 19 18 17 41 41 H 1.09003 * 109.47000 * 59.99604 * 21 20 19 42 42 H 1.08995 * 109.47928 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.46796 * 300.00401 * 21 20 19 44 44 H 1.09000 * 109.58564 * 353.42033 * 24 16 14 45 45 H 1.09004 * 109.58305 * 113.84694 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.3427 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4454 14 6 1.8727 -0.4945 3.6694 15 8 2.4950 -1.5329 3.7821 16 7 1.5040 0.1928 4.7686 17 6 0.6551 1.3867 4.6551 18 6 -0.5618 1.2152 5.5696 19 6 -0.0868 0.9146 6.9931 20 6 0.7114 -0.3910 7.0013 21 6 1.1572 -0.7081 8.4302 22 6 -0.1325 -1.4860 6.4955 23 7 -0.7837 -2.3310 6.1052 24 6 1.9382 -0.2410 6.1035 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7087 1.1614 -3.4844 32 1 3.1301 -0.7217 1.2489 33 1 1.6766 -1.7490 1.2492 34 1 0.9943 0.7581 2.3564 35 1 1.2204 2.2674 4.9603 36 1 0.3255 1.5039 3.6228 37 1 -1.1500 2.1329 5.5685 38 1 -1.1747 0.3893 5.2086 39 1 0.5462 1.7295 7.3443 40 1 -0.9504 0.8163 7.6509 41 1 0.2805 -0.8144 9.0691 42 1 1.7260 -1.6379 8.4355 43 1 1.7829 0.1024 8.8038 44 1 2.4527 -1.1989 6.0270 45 1 2.6102 0.5042 6.5292 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590948981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:06:27 Heat of formation + Delta-G solvation = -9.350569 kcal Electronic energy + Delta-G solvation = -24567.066881 eV Core-core repulsion = 21198.486722 eV Total energy + Delta-G solvation = -3368.580159 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.59079 -38.57457 -36.40325 -35.85023 -34.08434 -33.04406 -32.12237 -30.75091 -27.31803 -26.07516 -25.71679 -25.37213 -24.24384 -23.24107 -22.04576 -19.75162 -18.89616 -17.94335 -17.01238 -16.02207 -15.67433 -15.45513 -15.10798 -14.77920 -14.46842 -14.12543 -13.92859 -13.65370 -13.52690 -13.41572 -12.89875 -12.74353 -12.63011 -12.40842 -12.29149 -12.14095 -11.94030 -11.78714 -11.41617 -11.30734 -11.18888 -11.03098 -10.85107 -10.79128 -10.67316 -10.37371 -10.18671 -9.74775 -9.62071 -9.29281 -8.78064 -8.74483 -8.39394 -8.15683 -6.00855 -4.10516 2.73110 2.76449 2.87893 3.29835 3.36600 3.41034 3.53970 3.69476 4.21098 4.37042 4.41114 4.46056 4.55687 4.68908 4.92458 5.11540 5.21955 5.26041 5.31428 5.33167 5.44502 5.48304 5.56456 5.59405 5.71990 5.79438 5.93574 6.20121 6.38017 6.49964 6.51949 6.80345 6.82635 6.91451 7.04407 7.09799 7.21381 7.39360 7.56366 7.56904 7.71103 8.02181 8.13234 8.36577 8.42271 8.88934 9.00326 9.55127 11.00654 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030574 B = 0.003564 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.585596 B = 7854.663352 C = 8064.786130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.149 3.851 13 N -0.731 5.731 14 C 0.702 3.298 15 O -0.595 6.595 16 N -0.638 5.638 17 C 0.110 3.890 18 C -0.142 4.142 19 C -0.105 4.105 20 C 0.020 3.980 21 C -0.139 4.139 22 C 0.215 3.785 23 N -0.427 5.427 24 C 0.142 3.858 25 H 0.003 0.997 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.027 0.973 29 H 0.085 0.915 30 H 0.004 0.996 31 H 0.259 0.741 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.393 0.607 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.151 6.565 20.773 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.543 4.543 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.026 3.974 13 N -0.387 5.387 14 C 0.404 3.596 15 O -0.473 6.473 16 N -0.377 5.377 17 C -0.013 4.013 18 C -0.180 4.180 19 C -0.144 4.144 20 C 0.015 3.985 21 C -0.198 4.198 22 C -0.103 4.103 23 N -0.102 5.102 24 C 0.016 3.984 25 H 0.022 0.978 26 H 0.104 0.896 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.104 0.896 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.231 0.769 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.119 0.881 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.730 4.621 20.030 20.629 hybrid contribution 0.146 0.231 -0.825 0.869 sum -1.584 4.852 19.205 19.872 Atomic orbital electron populations 1.21813 0.97818 0.99167 0.99859 1.18363 0.92751 0.92806 0.90558 1.21808 0.98583 0.98299 0.99909 1.20987 1.31426 1.12062 0.89849 0.92409 1.24877 0.94883 0.94914 0.98832 1.69806 1.36773 1.22754 1.23185 0.86566 0.79346 0.79381 0.82557 1.20733 1.21277 1.19879 1.21608 0.97799 0.95573 0.82434 1.45673 1.55478 1.33037 1.04558 1.15956 0.79992 0.82972 0.80709 1.90878 1.47071 1.23771 1.85610 1.47246 1.55194 1.29835 1.05393 1.21639 0.91215 0.87856 1.00625 1.22007 0.97982 1.03031 0.95012 1.21630 1.00157 0.94928 0.97637 1.18745 0.93677 0.89422 0.96625 1.21823 1.02417 1.03318 0.92223 1.28813 0.93945 0.94070 0.93483 1.81211 1.10082 1.10743 1.08143 1.21375 0.93280 1.02982 0.80720 0.97784 0.89594 0.95479 0.95411 0.89626 0.97691 0.93041 0.92920 0.92975 0.76944 0.90807 0.89993 0.89765 0.91531 0.89370 0.90690 0.91352 0.91280 0.90135 0.88058 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.08 37.15 0.30 -2.68 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 4 C -0.50 -13.42 8.01 -34.44 -0.28 -13.69 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.73 9.35 55.43 0.52 -23.21 16 8 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 C 0.15 3.29 4.51 -4.04 -0.02 3.27 16 13 N -0.73 -13.66 4.87 -65.22 -0.32 -13.98 16 14 C 0.70 12.88 8.30 -86.93 -0.72 12.16 16 15 O -0.59 -13.19 15.77 5.29 0.08 -13.11 16 16 N -0.64 -8.36 2.68 -178.76 -0.48 -8.84 16 17 C 0.11 1.08 6.39 -3.71 -0.02 1.05 16 18 C -0.14 -1.15 5.84 -26.61 -0.16 -1.31 16 19 C -0.10 -0.65 4.69 -26.69 -0.13 -0.77 16 20 C 0.02 0.17 0.72 -157.40 -0.11 0.05 16 21 C -0.14 -0.73 8.44 37.16 0.31 -0.42 16 22 C 0.22 2.80 12.21 -20.76 -0.25 2.55 16 23 N -0.43 -7.07 18.54 42.15 0.78 -6.29 16 24 C 0.14 1.44 5.06 -3.93 -0.02 1.42 16 25 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 26 H 0.09 2.17 6.07 -51.93 -0.32 1.86 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 30 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 31 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.39 6.60 3.65 -40.82 -0.15 6.45 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.89 5.64 -51.93 -0.29 0.59 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.73 7.14 -51.93 -0.37 0.36 16 39 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 44 H 0.10 1.28 6.99 -51.93 -0.36 0.92 16 45 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -32.60 351.07 -7.24 -39.84 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.13 Total: 2.41 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.96 Total: 1.96 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.50 Total: -52.31 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.60 -7.24 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590948981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.485 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds