Wall clock time and date at job start Fri Apr 10 2020 20:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47473 * 2 1 4 4 C 1.50704 * 109.47284 * 240.00236 * 2 1 3 5 5 H 1.08000 * 120.00288 * 240.00119 * 4 2 1 6 6 C 1.37880 * 120.00071 * 59.99616 * 4 2 1 7 7 N 1.31522 * 119.99800 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00414 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47160 * 89.99914 * 8 6 4 10 10 H 1.48492 * 109.47084 * 210.00267 * 8 6 4 11 11 H 1.48505 * 109.46686 * 330.00324 * 8 6 4 12 12 C 1.52999 * 109.47621 * 120.00406 * 2 1 3 13 13 N 1.46504 * 109.47036 * 300.00116 * 12 2 1 14 14 C 1.34768 * 120.00355 * 179.72227 * 13 12 2 15 15 O 1.21587 * 119.99731 * 355.29211 * 14 13 12 16 16 N 1.34776 * 120.00394 * 175.29057 * 14 13 12 17 17 C 1.46928 * 120.62874 * 5.22605 * 16 14 13 18 18 C 1.53187 * 108.77730 * 126.36878 * 17 16 14 19 19 C 1.53039 * 109.31301 * 54.63266 * 18 17 16 20 20 C 1.53032 * 109.54002 * 298.63530 * 19 18 17 21 21 C 1.52998 * 109.50248 * 181.34837 * 20 19 18 22 22 C 1.47207 * 109.50019 * 301.41553 * 20 19 18 23 23 N 6.93248 * 70.50461 * 110.89697 * 2 1 3 24 24 C 1.46926 * 120.63194 * 184.94232 * 16 14 13 25 25 H 1.09000 * 109.47011 * 299.99936 * 1 2 3 26 26 H 1.09003 * 109.47389 * 59.99910 * 1 2 3 27 27 H 1.08997 * 109.47115 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47275 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47341 * 300.00116 * 3 2 1 30 30 H 1.09000 * 109.46950 * 60.00026 * 3 2 1 31 31 H 0.96998 * 119.99779 * 180.02562 * 7 6 4 32 32 H 1.09003 * 109.47623 * 179.97438 * 12 2 1 33 33 H 1.09005 * 109.47131 * 59.99324 * 12 2 1 34 34 H 0.97009 * 119.99701 * 359.97438 * 13 12 2 35 35 H 1.09006 * 109.58636 * 246.15958 * 17 16 14 36 36 H 1.08999 * 109.58431 * 6.43391 * 17 16 14 37 37 H 1.09004 * 109.50017 * 174.58668 * 18 17 16 38 38 H 1.09001 * 109.49759 * 294.68378 * 18 17 16 39 39 H 1.09004 * 109.45892 * 58.65803 * 19 18 17 40 40 H 1.09001 * 109.45919 * 178.62362 * 19 18 17 41 41 H 1.09003 * 109.47000 * 59.99604 * 21 20 19 42 42 H 1.08995 * 109.47928 * 180.02562 * 21 20 19 43 43 H 1.09005 * 109.46796 * 300.00401 * 21 20 19 44 44 H 1.09000 * 109.58564 * 353.42033 * 24 16 14 45 45 H 1.09004 * 109.58305 * 113.84694 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 1.3427 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1123 11 1 3.6292 -1.7581 -3.7123 12 6 2.0400 -0.7213 1.2491 13 7 1.5517 -0.0308 2.4454 14 6 1.8727 -0.4945 3.6694 15 8 2.4950 -1.5329 3.7821 16 7 1.5040 0.1928 4.7686 17 6 0.6551 1.3867 4.6551 18 6 -0.5618 1.2152 5.5696 19 6 -0.0868 0.9146 6.9931 20 6 0.7114 -0.3910 7.0013 21 6 1.1572 -0.7081 8.4302 22 6 -0.1325 -1.4860 6.4955 23 7 -0.7837 -2.3310 6.1052 24 6 1.9382 -0.2410 6.1035 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7087 1.1614 -3.4844 32 1 3.1301 -0.7217 1.2489 33 1 1.6766 -1.7490 1.2492 34 1 0.9943 0.7581 2.3564 35 1 1.2204 2.2674 4.9603 36 1 0.3255 1.5039 3.6228 37 1 -1.1500 2.1329 5.5685 38 1 -1.1747 0.3893 5.2086 39 1 0.5462 1.7295 7.3443 40 1 -0.9504 0.8163 7.6509 41 1 0.2805 -0.8144 9.0691 42 1 1.7260 -1.6379 8.4355 43 1 1.7829 0.1024 8.8038 44 1 2.4527 -1.1989 6.0270 45 1 2.6102 0.5042 6.5292 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590948981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:06:27 Heat of formation + Delta-G solvation = -29.760260 kcal Electronic energy + Delta-G solvation = -24567.951912 eV Core-core repulsion = 21198.486722 eV Total energy + Delta-G solvation = -3369.465190 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.68957 -39.74961 -38.13749 -36.99793 -35.32460 -34.51506 -32.88455 -32.57503 -28.14366 -27.60015 -27.40542 -27.05077 -25.63299 -24.00798 -22.86979 -21.10722 -20.66273 -19.22287 -17.90226 -17.84767 -17.08763 -16.64525 -16.55187 -15.90377 -15.54901 -15.34622 -15.14073 -14.88964 -14.66799 -14.62953 -14.31984 -14.05900 -14.02099 -13.49060 -13.23119 -13.17603 -13.05413 -12.92754 -12.74277 -12.70229 -12.59333 -12.47700 -12.28205 -12.15210 -11.93504 -11.79609 -11.52011 -11.43832 -11.32744 -11.07901 -10.73723 -10.41947 -10.13055 -9.44551 -8.04107 -6.19689 1.41361 1.43922 1.52333 1.67534 1.76384 1.80439 2.14913 2.44580 2.87840 3.05630 3.19376 3.69789 3.79229 3.87169 4.05780 4.25124 4.36547 4.48187 4.52845 4.54449 4.67112 4.73582 4.80010 4.91314 4.92221 4.94648 5.01190 5.03606 5.05931 5.09950 5.16289 5.21813 5.34942 5.35528 5.38056 5.56638 5.61961 5.63811 5.65703 5.92691 6.11358 6.19263 6.41624 6.59083 6.83602 7.00243 7.47811 7.57965 8.95087 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.030574 B = 0.003564 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.585596 B = 7854.663352 C = 8064.786130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.052 3.948 3 C -0.115 4.115 4 C -0.531 4.531 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.946 3.054 9 H -0.281 1.281 10 H -0.279 1.279 11 H -0.276 1.276 12 C 0.167 3.833 13 N -0.728 5.728 14 C 0.695 3.305 15 O -0.642 6.642 16 N -0.630 5.630 17 C 0.102 3.898 18 C -0.140 4.140 19 C -0.099 4.099 20 C 0.022 3.978 21 C -0.135 4.135 22 C 0.235 3.765 23 N -0.505 5.505 24 C 0.134 3.866 25 H 0.032 0.968 26 H 0.066 0.934 27 H 0.010 0.990 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.261 0.739 32 H 0.039 0.961 33 H 0.024 0.976 34 H 0.404 0.596 35 H 0.114 0.886 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.027 0.973 39 H 0.131 0.869 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.118 0.882 44 H 0.069 0.931 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 9.447 23.211 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.052 3.948 3 C -0.173 4.173 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.772 3.228 9 H -0.207 1.207 10 H -0.204 1.204 11 H -0.201 1.201 12 C 0.043 3.957 13 N -0.385 5.385 14 C 0.396 3.604 15 O -0.525 6.525 16 N -0.367 5.367 17 C -0.020 4.020 18 C -0.178 4.178 19 C -0.137 4.137 20 C 0.018 3.982 21 C -0.193 4.193 22 C -0.082 4.082 23 N -0.180 5.180 24 C 0.011 3.989 25 H 0.050 0.950 26 H 0.085 0.915 27 H 0.029 0.971 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.243 0.757 35 H 0.132 0.868 36 H 0.085 0.915 37 H 0.132 0.868 38 H 0.046 0.954 39 H 0.149 0.851 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.136 0.864 44 H 0.088 0.912 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.577 7.555 22.517 23.803 hybrid contribution 0.081 -0.645 -1.520 1.653 sum -1.496 6.909 20.997 22.155 Atomic orbital electron populations 1.21649 0.97474 0.98182 1.00211 1.18356 0.92939 0.93450 0.90088 1.21617 0.98043 0.97298 1.00368 1.21254 1.31883 1.12188 0.91615 0.93944 1.25440 0.95101 0.95584 1.00889 1.69897 1.36890 1.23167 1.23675 0.85750 0.78620 0.78500 0.79888 1.20748 1.20447 1.20061 1.21114 0.96743 0.94325 0.83566 1.45385 1.55879 1.33217 1.04013 1.16190 0.79791 0.82795 0.81629 1.90843 1.49223 1.26000 1.86417 1.47355 1.54542 1.29991 1.04856 1.21997 0.91903 0.87480 1.00610 1.22024 0.96935 1.03010 0.95841 1.21742 1.01142 0.94360 0.96458 1.19181 0.92329 0.89058 0.97671 1.21883 1.03274 1.04299 0.89869 1.29994 0.92823 0.93741 0.91640 1.81212 1.12821 1.13375 1.10627 1.21722 0.94654 1.02962 0.79600 0.94960 0.91520 0.97090 0.96054 0.91750 0.94472 0.92928 0.94306 0.95774 0.75687 0.86797 0.91453 0.86806 0.95358 0.85051 0.89271 0.90455 0.92421 0.86358 0.91222 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 2 C 0.05 2.51 0.50 -52.93 -0.03 2.49 16 3 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 4 C -0.53 -28.96 8.01 25.60 0.21 -28.75 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.60 5.15 84.65 0.44 2.03 16 7 N -0.90 -48.25 9.35 21.45 0.20 -48.04 16 8 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 9 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 12 C 0.17 7.64 4.51 86.38 0.39 8.03 16 13 N -0.73 -27.23 4.87 -478.53 -2.33 -29.56 16 14 C 0.69 25.61 8.30 179.06 1.49 27.09 16 15 O -0.64 -29.59 15.77 -3.99 -0.06 -29.66 16 16 N -0.63 -15.35 2.68 -837.74 -2.24 -17.59 16 17 C 0.10 1.64 6.39 86.36 0.55 2.19 16 18 C -0.14 -1.78 5.84 30.67 0.18 -1.60 16 19 C -0.10 -0.72 4.69 30.62 0.14 -0.58 16 20 C 0.02 0.30 0.72 -54.05 -0.04 0.26 16 21 C -0.13 -0.89 8.44 71.98 0.61 -0.29 16 22 C 0.24 6.08 12.21 89.44 1.09 7.17 16 23 N -0.50 -17.44 18.54 20.01 0.37 -17.07 16 24 C 0.13 2.39 5.06 86.22 0.44 2.82 16 25 H 0.03 1.27 6.86 -2.39 -0.02 1.26 16 26 H 0.07 3.39 6.07 -2.39 -0.01 3.38 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 30 H 0.04 1.37 6.86 -2.39 -0.02 1.35 16 31 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.40 13.10 3.65 -92.70 -0.34 12.76 16 35 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.07 1.29 5.64 -2.39 -0.01 1.27 16 37 H 0.11 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.03 0.58 7.14 -2.39 -0.02 0.57 16 39 H 0.13 -0.02 8.14 -2.38 -0.02 -0.04 16 40 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.12 -0.04 8.14 -2.38 -0.02 -0.06 16 44 H 0.07 1.73 6.99 -2.39 -0.02 1.71 16 45 H 0.13 1.17 8.14 -2.38 -0.02 1.15 16 Total: -1.00 -76.90 351.07 5.23 -71.67 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.65 Total: 13.43 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 6.62 Total: 11.40 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -4.00 Total: -112.27 kcal Atomic # 8 Polarization: -29.59 SS G_CDS: -0.06 Total: -29.66 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -76.90 5.23 -71.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590948981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.910 kcal (2) G-P(sol) polarization free energy of solvation -76.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds