Wall clock time and date at job start Fri Apr 10 2020 20:06:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46509 * 109.46746 * 2 1 4 4 C 1.46497 * 119.99709 * 95.54451 * 3 2 1 5 5 C 1.50701 * 109.47037 * 268.23917 * 4 3 2 6 6 O 1.34312 * 125.78821 * 276.09226 * 5 4 3 7 7 C 1.34302 * 109.47510 * 180.24112 * 6 5 4 8 8 C 1.34511 * 108.42214 * 359.76755 * 7 6 5 9 9 C 1.34505 * 125.79474 * 95.93162 * 5 4 3 10 10 C 1.50704 * 126.57749 * 0.03412 * 9 5 4 11 11 C 1.34780 * 120.00025 * 275.54126 * 3 2 1 12 12 O 1.21280 * 119.99645 * 179.97438 * 11 3 2 13 13 C 1.50703 * 119.99953 * 0.02562 * 11 3 2 14 14 C 1.52995 * 109.47019 * 179.97438 * 13 11 3 15 15 C 1.53000 * 109.47194 * 180.02562 * 14 13 11 16 16 C 1.53004 * 109.46889 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46714 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00414 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99964 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00120 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99861 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47404 * 89.99299 * 21 19 17 23 23 H 1.48499 * 109.46971 * 209.99958 * 21 19 17 24 24 H 1.48508 * 109.47063 * 329.99556 * 21 19 17 25 25 H 1.08992 * 109.47180 * 305.67076 * 1 2 3 26 26 H 1.08998 * 109.46845 * 65.67371 * 1 2 3 27 27 H 1.09003 * 109.46554 * 185.66781 * 1 2 3 28 28 H 1.08997 * 109.47007 * 240.00586 * 2 1 3 29 29 H 1.08995 * 109.47404 * 120.00007 * 2 1 3 30 30 H 1.09000 * 109.47333 * 148.23745 * 4 3 2 31 31 H 1.08995 * 109.47442 * 28.23587 * 4 3 2 32 32 H 1.07997 * 125.78572 * 179.75092 * 7 6 5 33 33 H 1.07994 * 126.58229 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.46984 * 266.45172 * 10 9 5 35 35 H 1.08998 * 109.47429 * 146.45516 * 10 9 5 36 36 H 1.08998 * 109.46855 * 26.44938 * 10 9 5 37 37 H 1.09001 * 109.47156 * 299.99923 * 13 11 3 38 38 H 1.09000 * 109.46941 * 59.99995 * 13 11 3 39 39 H 1.09001 * 109.47247 * 300.00056 * 14 13 11 40 40 H 1.09006 * 109.47058 * 59.99853 * 14 13 11 41 41 H 1.08997 * 109.46578 * 299.99880 * 15 14 13 42 42 H 1.09000 * 109.46919 * 60.00090 * 15 14 13 43 43 H 1.09004 * 109.46665 * 299.99644 * 16 15 14 44 44 H 1.08993 * 109.47208 * 59.99900 * 16 15 14 45 45 H 0.96997 * 119.99924 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3780 2.0310 1.2628 5 6 1.1792 2.7612 1.8113 6 8 0.7862 3.9978 1.4642 7 6 -0.3163 4.3280 2.1564 8 6 -0.6427 3.2953 2.9540 9 6 0.3195 2.2841 2.7291 10 6 0.3750 0.9332 3.3950 11 6 2.1366 2.0543 -1.1618 12 8 2.5404 3.1979 -1.1616 13 6 1.7661 1.3860 -2.4607 14 6 1.9911 2.3610 -3.6181 15 6 1.6144 1.6828 -4.9369 16 6 1.8400 2.6577 -6.0943 17 6 1.4695 1.9895 -7.3933 18 1 1.1088 0.9715 -7.3933 19 6 1.5901 2.6781 -8.5817 20 7 1.2672 2.0948 -9.7154 21 14 2.2133 4.4390 -8.5818 22 1 3.6920 4.4408 -8.7177 23 1 1.6105 5.1774 -9.7205 24 1 1.8326 5.0988 -7.3069 25 1 -0.3633 0.5992 0.8348 26 1 -0.3633 0.4233 -0.9364 27 1 -0.3632 -1.0227 0.1015 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 3.1872 2.7402 1.0890 31 1 2.7033 1.2771 1.9796 32 1 -0.8501 5.2641 2.0848 33 1 -1.4789 3.2478 3.6357 34 1 -0.2450 0.2290 2.8402 35 1 0.0051 1.0163 4.4169 36 1 1.4052 0.5774 3.4093 37 1 2.3868 0.5016 -2.6043 38 1 0.7167 1.0927 -2.4320 39 1 1.3701 3.2452 -3.4743 40 1 3.0404 2.6548 -3.6470 41 1 2.2351 0.7985 -5.0808 42 1 0.5650 1.3895 -4.9077 43 1 1.2195 3.5423 -5.9504 44 1 2.8894 2.9507 -6.1232 45 1 1.3524 2.5791 -10.5515 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591103085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:06:35 Heat of formation + Delta-G solvation = -44.349206 kcal Electronic energy + Delta-G solvation = -23572.421372 eV Core-core repulsion = 20170.030807 eV Total energy + Delta-G solvation = -3402.390565 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.78134 -40.00811 -36.43031 -35.05211 -34.31329 -32.70214 -31.93792 -30.42326 -30.05139 -28.15235 -26.40914 -25.07695 -23.66583 -21.97056 -21.52697 -20.10318 -19.98667 -19.00145 -17.38240 -17.13654 -16.53300 -16.46955 -15.85350 -15.67225 -14.85213 -14.48102 -14.19303 -14.17283 -13.87919 -13.71332 -13.35144 -13.08288 -12.90246 -12.69025 -12.60858 -12.46023 -12.25169 -12.18216 -11.87472 -11.72937 -11.66435 -11.39690 -11.01306 -10.69280 -10.48265 -9.95145 -9.81795 -9.79026 -9.62179 -9.42179 -9.10031 -9.04603 -8.56614 -8.47456 -5.98813 -3.96081 1.45947 2.29230 2.59457 2.91193 2.98684 3.36980 3.43855 3.50458 4.37681 4.48408 4.51992 4.61219 4.64300 4.68784 4.87728 4.95467 5.08573 5.18741 5.21378 5.25006 5.29224 5.35171 5.37118 5.42565 5.46471 5.55338 5.61754 5.75328 5.77394 5.96478 6.03005 6.07273 6.15363 6.25546 6.34395 6.44819 6.71230 6.84678 6.98743 7.01802 7.21857 7.40759 7.53585 7.86815 8.16207 8.60310 9.06257 9.64754 11.14729 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.024834 B = 0.002911 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.204974 B = 9618.000761 C =10106.741591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.107 3.893 3 N -0.617 5.617 4 C 0.194 3.806 5 C -0.026 4.026 6 O -0.160 6.160 7 C -0.035 4.035 8 C -0.217 4.217 9 C -0.172 4.172 10 C -0.083 4.083 11 C 0.515 3.485 12 O -0.525 6.525 13 C -0.137 4.137 14 C -0.107 4.107 15 C -0.102 4.102 16 C -0.015 4.015 17 C -0.519 4.519 18 H 0.071 0.929 19 C 0.064 3.936 20 N -0.907 5.907 21 Si 0.879 3.121 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.264 1.264 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.200 0.800 33 H 0.146 0.854 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.015 0.985 44 H 0.011 0.989 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.670 -4.312 30.321 30.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.016 4.016 3 N -0.352 5.352 4 C 0.071 3.929 5 C -0.078 4.078 6 O -0.054 6.054 7 C -0.103 4.103 8 C -0.237 4.237 9 C -0.175 4.175 10 C -0.140 4.140 11 C 0.304 3.696 12 O -0.400 6.400 13 C -0.177 4.177 14 C -0.145 4.145 15 C -0.139 4.139 16 C -0.053 4.053 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.707 3.293 22 H -0.203 1.203 23 H -0.215 1.215 24 H -0.189 1.189 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.116 0.884 31 H 0.125 0.875 32 H 0.217 0.783 33 H 0.163 0.837 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.285 -3.489 29.888 30.118 hybrid contribution -0.133 0.885 0.083 0.899 sum -1.418 -2.604 29.971 30.117 Atomic orbital electron populations 1.22363 0.95788 1.02472 1.03309 1.21620 0.94780 0.81785 1.03433 1.48197 1.66969 1.14350 1.05688 1.19750 0.91637 0.95882 0.85656 1.22706 1.00498 0.84759 0.99848 1.84158 1.37297 1.30060 1.53914 1.24071 0.89371 1.01118 0.95782 1.21675 1.02741 0.94399 1.04853 1.20204 0.97146 0.98471 1.01648 1.20244 1.02067 0.91930 0.99777 1.21146 0.76648 0.86416 0.85380 1.90713 1.44701 1.17646 1.86952 1.21852 1.03299 1.00660 0.91887 1.21499 1.02374 0.97570 0.93030 1.21468 1.00370 0.99058 0.93024 1.19577 0.96233 0.95369 0.94103 1.21188 1.43713 1.01161 0.89593 0.91110 1.25041 0.94964 0.98068 0.95542 1.69922 1.49324 1.37458 0.97887 0.86777 0.79267 0.85445 0.77837 1.20305 1.21474 1.18891 0.91678 0.92020 0.91390 0.89773 0.90230 0.88360 0.87546 0.78314 0.83664 0.91268 0.91629 0.91854 0.88957 0.88989 0.91878 0.91789 0.92871 0.92903 0.96645 0.97049 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 10.15 37.16 0.38 -0.99 16 2 C 0.11 0.76 5.93 -4.04 -0.02 0.74 16 3 N -0.62 -6.45 2.47 -175.06 -0.43 -6.89 16 4 C 0.19 1.88 5.81 -5.19 -0.03 1.85 16 5 C -0.03 -0.29 6.72 -35.63 -0.24 -0.53 16 6 O -0.16 -2.14 10.65 5.69 0.06 -2.08 16 7 C -0.03 -0.36 12.09 29.41 0.36 0.00 16 8 C -0.22 -2.04 10.87 -39.70 -0.43 -2.47 16 9 C -0.17 -1.62 5.19 -104.74 -0.54 -2.17 16 10 C -0.08 -0.52 9.95 36.01 0.36 -0.16 16 11 C 0.51 7.29 7.62 -10.98 -0.08 7.21 16 12 O -0.53 -9.59 15.59 5.56 0.09 -9.51 16 13 C -0.14 -1.83 4.31 -27.88 -0.12 -1.95 16 14 C -0.11 -1.86 4.50 -26.73 -0.12 -1.98 16 15 C -0.10 -2.04 5.15 -26.73 -0.14 -2.18 16 16 C -0.02 -0.39 4.04 -27.88 -0.11 -0.50 16 17 C -0.52 -15.23 9.66 -34.44 -0.33 -15.57 16 18 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 19 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 20 N -0.91 -28.62 13.96 55.43 0.77 -27.84 16 21 Si 0.88 22.61 27.47 -169.99 -4.67 17.95 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 25 H 0.06 0.55 5.42 -51.93 -0.28 0.27 16 26 H 0.06 0.56 6.53 -51.93 -0.34 0.22 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.55 6.67 -51.93 -0.35 0.20 16 29 H 0.08 0.38 7.81 -51.93 -0.41 -0.03 16 30 H 0.10 1.10 7.48 -51.93 -0.39 0.71 16 31 H 0.11 0.66 6.60 -51.93 -0.34 0.31 16 32 H 0.20 1.37 8.06 -52.49 -0.42 0.94 16 33 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.07 0.40 7.00 -51.93 -0.36 0.03 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.31 6.95 -51.93 -0.36 -0.05 16 37 H 0.09 1.04 7.41 -51.93 -0.38 0.66 16 38 H 0.09 1.11 6.48 -51.93 -0.34 0.78 16 39 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 40 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 41 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 44 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 45 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 LS Contribution 362.69 15.07 5.47 5.47 Total: -1.00 -35.96 362.69 -7.18 -43.14 By element: Atomic # 1 Polarization: 3.91 SS G_CDS: -7.28 Total: -3.38 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -1.18 Total: -16.86 kcal Atomic # 7 Polarization: -35.07 SS G_CDS: 0.34 Total: -34.73 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.15 Total: -11.59 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -4.67 Total: 17.95 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.96 -7.18 -43.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591103085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.207 kcal (2) G-P(sol) polarization free energy of solvation -35.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds