Wall clock time and date at job start Fri Apr 10 2020 20:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99416 * 2 1 4 4 H 1.48501 * 109.46914 * 275.52457 * 3 2 1 5 5 H 1.48497 * 109.47063 * 35.52481 * 3 2 1 6 6 H 1.48493 * 109.46947 * 155.52472 * 3 2 1 7 7 C 1.37873 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99906 * 348.86169 * 7 2 1 9 9 C 1.50694 * 120.00316 * 168.86254 * 7 2 1 10 10 C 1.53002 * 115.54634 * 323.12181 * 9 7 2 11 11 N 1.46501 * 109.47338 * 304.16325 * 10 9 7 12 12 C 1.34774 * 120.00172 * 184.94515 * 11 10 9 13 13 O 1.21584 * 120.00362 * 5.00162 * 12 11 10 14 14 N 1.34779 * 119.99990 * 184.99396 * 12 11 10 15 15 C 1.46630 * 119.73974 * 354.76425 * 14 12 11 16 16 C 1.53920 * 110.76199 * 227.62149 * 15 14 12 17 17 C 1.51822 * 107.27379 * 308.58944 * 16 15 14 18 18 H 1.08994 * 110.30564 * 304.81638 * 17 16 15 19 19 C 1.53002 * 115.73538 * 177.87483 * 17 16 15 20 20 C 1.54957 * 104.00455 * 216.57687 * 19 17 16 21 21 N 1.49036 * 106.84412 * 2.25940 * 20 19 17 22 22 C 1.46768 * 104.35524 * 25.81144 * 21 20 19 23 23 H 1.09003 * 110.60916 * 74.18022 * 22 21 20 24 24 C 1.47772 * 119.71747 * 174.91984 * 14 12 11 25 25 C 1.52996 * 117.50261 * 108.78680 * 9 7 2 26 26 C 1.53000 * 117.50357 * 177.45077 * 9 7 2 27 27 H 0.96992 * 120.00814 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47240 * 184.16697 * 10 9 7 29 29 H 1.08992 * 109.47671 * 64.16569 * 10 9 7 30 30 H 0.97007 * 119.99717 * 4.94440 * 11 10 9 31 31 H 1.09000 * 109.14379 * 107.32622 * 15 14 12 32 32 H 1.08997 * 109.25498 * 347.99335 * 15 14 12 33 33 H 1.08994 * 109.89907 * 189.14860 * 16 15 14 34 34 H 1.08997 * 109.95784 * 68.06850 * 16 15 14 35 35 H 1.09001 * 110.52500 * 335.20628 * 19 17 16 36 36 H 1.08997 * 110.51554 * 97.80912 * 19 17 16 37 37 H 1.08992 * 109.98429 * 121.61435 * 20 19 17 38 38 H 1.09002 * 109.97993 * 242.87986 * 20 19 17 39 39 H 1.00891 * 111.00528 * 266.16724 * 21 20 19 40 40 H 1.09006 * 110.06731 * 9.23279 * 24 14 12 41 41 H 1.08994 * 110.07256 * 247.75822 * 24 14 12 42 42 H 1.08998 * 117.50506 * 215.00745 * 25 9 7 43 43 H 1.09004 * 117.49586 * 0.03028 * 25 9 7 44 44 H 1.09006 * 117.49577 * 359.97438 * 26 9 7 45 45 H 1.08994 * 117.49834 * 144.97046 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3797 2.1139 -1.3936 5 1 1.5096 2.6162 0.8135 6 1 3.6000 1.4095 0.5800 7 6 2.0046 -1.1939 0.0005 8 1 1.4800 -2.1204 0.1816 9 6 3.4903 -1.2063 -0.2515 10 6 3.9932 -0.1931 -1.2818 11 7 3.2807 -0.3884 -2.5469 12 6 3.6289 0.3280 -3.6341 13 8 4.5915 1.0695 -3.5908 14 7 2.9101 0.2225 -4.7693 15 6 1.8221 -0.7569 -4.8529 16 6 1.9160 -1.5666 -6.1585 17 6 2.0317 -0.5712 -7.2990 18 1 1.2010 0.1338 -7.2715 19 6 2.1887 -1.1762 -8.6955 20 6 3.1603 -0.2081 -9.4166 21 7 3.5470 0.8342 -8.4241 22 6 3.3831 0.1761 -7.1226 23 1 4.1888 -0.5372 -6.9491 24 6 3.2273 1.0927 -5.9207 25 6 4.4053 -1.5224 0.9332 26 6 4.2081 -2.5555 -0.1790 27 1 -0.4851 0.8399 0.0004 28 1 5.0619 -0.3366 -1.4409 29 1 3.8128 0.8175 -0.9157 30 1 2.5583 -1.0335 -2.6021 31 1 0.8666 -0.2332 -4.8232 32 1 1.8845 -1.4369 -4.0034 33 1 1.0188 -2.1725 -6.2847 34 1 2.7966 -2.2086 -6.1356 35 1 2.6209 -2.1750 -8.6330 36 1 1.2273 -1.2083 -9.2082 37 1 4.0447 -0.7495 -9.7522 38 1 2.6614 0.2544 -10.2682 39 1 2.9490 1.6435 -8.4980 40 1 4.1574 1.6309 -5.7378 41 1 2.4145 1.7985 -6.0914 42 1 5.3655 -1.0086 0.9787 43 1 3.9327 -1.7219 1.8949 44 1 3.6057 -3.4343 0.0516 45 1 5.0382 -2.7215 -0.8655 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591357581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:06:46 Heat of formation + Delta-G solvation = 21.956061 kcal Electronic energy + Delta-G solvation = -24895.646303 eV Core-core repulsion = 21528.423702 eV Total energy + Delta-G solvation = -3367.222602 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.60477 -39.03335 -37.12459 -35.50687 -33.48480 -32.36974 -32.29125 -30.16491 -28.72630 -26.91617 -25.28286 -23.98693 -22.85491 -21.52773 -21.34242 -20.57745 -19.50413 -19.12947 -17.80769 -16.63168 -16.19968 -15.81940 -15.53661 -15.02866 -14.90845 -14.67976 -14.31349 -14.05861 -13.69405 -13.38351 -13.13950 -12.92689 -12.86386 -12.61619 -12.39719 -12.10568 -12.02833 -11.42638 -11.32423 -11.04545 -10.94275 -10.82072 -10.65693 -10.49272 -10.45413 -9.97009 -9.76416 -9.47850 -9.32652 -8.98859 -8.81480 -8.55893 -8.46272 -7.98794 -6.27692 -4.23370 2.92417 3.29372 3.37611 3.40247 3.63694 3.93328 4.31143 4.31644 4.48825 4.49880 4.67145 4.77583 4.90205 5.00442 5.09672 5.22364 5.27190 5.30184 5.39087 5.43810 5.62458 5.65122 5.69279 5.80276 5.83375 5.87327 5.89955 5.91507 5.95726 6.14871 6.18821 6.25855 6.43300 6.45650 6.49265 6.65001 6.75459 6.85052 7.08519 7.11585 7.22024 7.34251 7.61673 8.35886 8.51639 8.77409 9.09604 9.37490 10.83070 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.004521 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.892819 B = 6191.193703 C = 6262.868469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.086 3.914 3 Si 0.886 3.114 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.262 1.262 7 C -0.490 4.490 8 H 0.080 0.920 9 C -0.008 4.008 10 C 0.158 3.842 11 N -0.718 5.718 12 C 0.703 3.297 13 O -0.603 6.603 14 N -0.631 5.631 15 C 0.110 3.890 16 C -0.117 4.117 17 C -0.132 4.132 18 H 0.077 0.923 19 C -0.143 4.143 20 C 0.041 3.959 21 N -0.659 5.659 22 C 0.057 3.943 23 H 0.093 0.907 24 C 0.140 3.860 25 C -0.199 4.199 26 C -0.186 4.186 27 H 0.266 0.734 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.407 0.593 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.336 0.664 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.305 -2.222 -16.052 16.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.118 4.118 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.228 1.228 6 H -0.188 1.188 7 C -0.527 4.527 8 H 0.098 0.902 9 C -0.009 4.009 10 C 0.035 3.965 11 N -0.375 5.375 12 C 0.405 3.595 13 O -0.483 6.483 14 N -0.370 5.370 15 C -0.014 4.014 16 C -0.155 4.155 17 C -0.153 4.153 18 H 0.095 0.905 19 C -0.182 4.182 20 C -0.088 4.088 21 N -0.286 5.286 22 C -0.054 4.054 23 H 0.111 0.889 24 C 0.016 3.984 25 C -0.237 4.237 26 C -0.224 4.224 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.246 0.754 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.151 0.849 40 H 0.119 0.881 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.102 0.898 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.558 -1.605 -16.048 16.516 hybrid contribution -1.066 0.471 0.167 1.177 sum 2.492 -1.134 -15.881 16.116 Atomic orbital electron populations 1.69906 1.06332 1.27386 1.48485 1.24916 0.94498 0.98926 0.93480 0.86974 0.79502 0.83470 0.78312 1.20380 1.22836 1.18778 1.20308 0.87840 0.95010 1.49505 0.90236 1.19542 0.94603 0.92732 0.94062 1.21162 0.94401 0.98801 0.82159 1.45284 1.39744 1.43584 1.08842 1.15920 0.82217 0.81080 0.80329 1.90843 1.29491 1.44080 1.83849 1.47233 1.36012 1.40470 1.13253 1.21647 0.90172 0.91238 0.98311 1.21746 1.02894 0.97411 0.93492 1.22566 0.99229 0.99038 0.94419 0.90499 1.22582 1.00059 1.00046 0.95551 1.23134 0.97915 0.92789 0.94990 1.62863 1.55808 1.07230 1.02657 1.22823 0.96482 0.96560 0.89554 0.88859 1.21191 1.02510 0.91494 0.83197 1.23100 1.00880 1.04687 0.95048 1.22818 1.02732 0.94197 1.02606 0.92369 0.92691 0.92721 0.75439 0.91570 0.89473 0.90401 0.91086 0.91022 0.91338 0.90474 0.91507 0.84865 0.88101 0.91974 0.91153 0.89329 0.89816 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 13.96 55.43 0.77 -24.42 16 2 C 0.09 2.33 5.42 -17.82 -0.10 2.23 16 3 Si 0.89 22.25 24.04 -169.99 -4.09 18.16 16 4 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 5 H -0.30 -7.60 7.11 56.52 0.40 -7.19 16 6 H -0.26 -6.41 6.38 56.52 0.36 -6.05 16 7 C -0.49 -12.71 8.87 -34.44 -0.31 -13.02 16 8 H 0.08 2.23 8.06 -52.48 -0.42 1.81 16 9 C -0.01 -0.18 1.41 -155.66 -0.22 -0.40 16 10 C 0.16 3.56 4.35 -4.04 -0.02 3.54 16 11 N -0.72 -15.02 5.05 -65.23 -0.33 -15.35 16 12 C 0.70 14.52 8.26 -86.92 -0.72 13.80 16 13 O -0.60 -14.30 15.69 5.29 0.08 -14.22 16 14 N -0.63 -10.30 3.01 -178.34 -0.54 -10.83 16 15 C 0.11 1.49 6.25 -3.49 -0.02 1.47 16 16 C -0.12 -1.23 5.71 -26.85 -0.15 -1.38 16 17 C -0.13 -1.30 2.53 -89.93 -0.23 -1.53 16 18 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 19 C -0.14 -1.18 6.61 -25.70 -0.17 -1.35 16 20 C 0.04 0.34 7.56 -1.60 -0.01 0.33 16 21 N -0.66 -6.71 7.45 -103.28 -0.77 -7.48 16 22 C 0.06 0.66 2.90 -67.03 -0.19 0.47 16 23 H 0.09 1.25 8.00 -51.93 -0.42 0.83 16 24 C 0.14 1.97 6.21 -3.88 -0.02 1.94 16 25 C -0.20 -4.06 9.96 -26.69 -0.27 -4.33 16 26 C -0.19 -3.63 9.93 -26.69 -0.27 -3.90 16 27 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.05 1.19 8.06 -51.93 -0.42 0.77 16 29 H 0.06 1.35 2.55 -51.93 -0.13 1.22 16 30 H 0.41 8.14 5.45 -40.82 -0.22 7.92 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 1.25 5.65 -51.93 -0.29 0.96 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.07 0.77 8.03 -51.93 -0.42 0.35 16 35 H 0.07 0.58 8.04 -51.93 -0.42 0.17 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.34 3.00 8.82 -39.30 -0.35 2.65 16 40 H 0.10 1.63 6.99 -51.93 -0.36 1.27 16 41 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 44 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 45 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 343.21 15.07 5.17 5.17 Total: -1.00 -30.43 343.21 -9.66 -40.08 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -7.27 Total: 11.00 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.69 Total: -2.11 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.86 Total: -58.09 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.08 Total: -14.22 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.09 Total: 18.16 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.43 -9.66 -40.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591357581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.039 kcal (2) G-P(sol) polarization free energy of solvation -30.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds