Wall clock time and date at job start Fri Apr 10 2020 20:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99416 * 2 1 4 4 H 1.48501 * 109.46914 * 275.52457 * 3 2 1 5 5 H 1.48497 * 109.47063 * 35.52481 * 3 2 1 6 6 H 1.48493 * 109.46947 * 155.52472 * 3 2 1 7 7 C 1.37873 * 120.00577 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99906 * 348.86169 * 7 2 1 9 9 C 1.50694 * 120.00316 * 168.86254 * 7 2 1 10 10 C 1.53002 * 115.54634 * 323.12181 * 9 7 2 11 11 N 1.46501 * 109.47338 * 304.16325 * 10 9 7 12 12 C 1.34774 * 120.00172 * 184.94515 * 11 10 9 13 13 O 1.21584 * 120.00362 * 5.00162 * 12 11 10 14 14 N 1.34779 * 119.99990 * 184.99396 * 12 11 10 15 15 C 1.46630 * 119.73974 * 354.76425 * 14 12 11 16 16 C 1.53920 * 110.76199 * 227.62149 * 15 14 12 17 17 C 1.51822 * 107.27379 * 308.58944 * 16 15 14 18 18 H 1.08994 * 110.30564 * 304.81638 * 17 16 15 19 19 C 1.53002 * 115.73538 * 177.87483 * 17 16 15 20 20 C 1.54957 * 104.00455 * 216.57687 * 19 17 16 21 21 N 1.49036 * 106.84412 * 2.25940 * 20 19 17 22 22 C 1.46768 * 104.35524 * 25.81144 * 21 20 19 23 23 H 1.09003 * 110.60916 * 74.18022 * 22 21 20 24 24 C 1.47772 * 119.71747 * 174.91984 * 14 12 11 25 25 C 1.52996 * 117.50261 * 108.78680 * 9 7 2 26 26 C 1.53000 * 117.50357 * 177.45077 * 9 7 2 27 27 H 0.96992 * 120.00814 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.47240 * 184.16697 * 10 9 7 29 29 H 1.08992 * 109.47671 * 64.16569 * 10 9 7 30 30 H 0.97007 * 119.99717 * 4.94440 * 11 10 9 31 31 H 1.09000 * 109.14379 * 107.32622 * 15 14 12 32 32 H 1.08997 * 109.25498 * 347.99335 * 15 14 12 33 33 H 1.08994 * 109.89907 * 189.14860 * 16 15 14 34 34 H 1.08997 * 109.95784 * 68.06850 * 16 15 14 35 35 H 1.09001 * 110.52500 * 335.20628 * 19 17 16 36 36 H 1.08997 * 110.51554 * 97.80912 * 19 17 16 37 37 H 1.08992 * 109.98429 * 121.61435 * 20 19 17 38 38 H 1.09002 * 109.97993 * 242.87986 * 20 19 17 39 39 H 1.00891 * 111.00528 * 266.16724 * 21 20 19 40 40 H 1.09006 * 110.06731 * 9.23279 * 24 14 12 41 41 H 1.08994 * 110.07256 * 247.75822 * 24 14 12 42 42 H 1.08998 * 117.50506 * 215.00745 * 25 9 7 43 43 H 1.09004 * 117.49586 * 0.03028 * 25 9 7 44 44 H 1.09006 * 117.49577 * 359.97438 * 26 9 7 45 45 H 1.08994 * 117.49834 * 144.97046 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3797 2.1139 -1.3936 5 1 1.5096 2.6162 0.8135 6 1 3.6000 1.4095 0.5800 7 6 2.0046 -1.1939 0.0005 8 1 1.4800 -2.1204 0.1816 9 6 3.4903 -1.2063 -0.2515 10 6 3.9932 -0.1931 -1.2818 11 7 3.2807 -0.3884 -2.5469 12 6 3.6289 0.3280 -3.6341 13 8 4.5915 1.0695 -3.5908 14 7 2.9101 0.2225 -4.7693 15 6 1.8221 -0.7569 -4.8529 16 6 1.9160 -1.5666 -6.1585 17 6 2.0317 -0.5712 -7.2990 18 1 1.2010 0.1338 -7.2715 19 6 2.1887 -1.1762 -8.6955 20 6 3.1603 -0.2081 -9.4166 21 7 3.5470 0.8342 -8.4241 22 6 3.3831 0.1761 -7.1226 23 1 4.1888 -0.5372 -6.9491 24 6 3.2273 1.0927 -5.9207 25 6 4.4053 -1.5224 0.9332 26 6 4.2081 -2.5555 -0.1790 27 1 -0.4851 0.8399 0.0004 28 1 5.0619 -0.3366 -1.4409 29 1 3.8128 0.8175 -0.9157 30 1 2.5583 -1.0335 -2.6021 31 1 0.8666 -0.2332 -4.8232 32 1 1.8845 -1.4369 -4.0034 33 1 1.0188 -2.1725 -6.2847 34 1 2.7966 -2.2086 -6.1356 35 1 2.6209 -2.1750 -8.6330 36 1 1.2273 -1.2083 -9.2082 37 1 4.0447 -0.7495 -9.7522 38 1 2.6614 0.2544 -10.2682 39 1 2.9490 1.6435 -8.4980 40 1 4.1574 1.6309 -5.7378 41 1 2.4145 1.7985 -6.0914 42 1 5.3655 -1.0086 0.9787 43 1 3.9327 -1.7219 1.8949 44 1 3.6057 -3.4343 0.0516 45 1 5.0382 -2.7215 -0.8655 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591357581.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:06:46 Heat of formation + Delta-G solvation = 0.304897 kcal Electronic energy + Delta-G solvation = -24896.585168 eV Core-core repulsion = 21528.423702 eV Total energy + Delta-G solvation = -3368.161467 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.82179 -40.30654 -38.79194 -36.74848 -35.10448 -34.36091 -33.36307 -31.23130 -29.63030 -28.61990 -27.09502 -25.20987 -23.86103 -23.11292 -22.24535 -21.51319 -21.27522 -20.58700 -19.34783 -18.23150 -17.67632 -17.40637 -17.01973 -16.23174 -15.88522 -15.80353 -15.56458 -15.51495 -15.10614 -14.87467 -14.71801 -14.39970 -14.03667 -13.89437 -13.79479 -13.47057 -13.13109 -13.04368 -12.56245 -12.31762 -12.23193 -12.15419 -11.84260 -11.83811 -11.64979 -11.52256 -11.31778 -11.28607 -11.17902 -10.76988 -10.43034 -10.08732 -9.59462 -9.51915 -8.39040 -6.33192 1.26222 1.34027 1.36603 1.55204 2.05227 2.24939 2.74969 2.98996 3.09435 3.46259 3.63539 3.68403 3.82196 3.95461 3.98446 4.08526 4.14913 4.18309 4.35720 4.37992 4.44353 4.46564 4.54075 4.59202 4.70752 4.76585 4.82080 4.89847 4.92032 4.93433 4.96377 5.03861 5.07376 5.14636 5.21041 5.36056 5.43511 5.49167 5.56037 5.65135 5.75411 5.85847 6.28357 6.40330 6.66580 6.95658 7.28348 7.49092 8.75437 Molecular weight = 293.18amu Principal moments of inertia in cm(-1) A = 0.021803 B = 0.004521 C = 0.004470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.892819 B = 6191.193703 C = 6262.868469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.054 3.946 3 Si 0.930 3.070 4 H -0.295 1.295 5 H -0.305 1.305 6 H -0.252 1.252 7 C -0.477 4.477 8 H 0.053 0.947 9 C -0.038 4.038 10 C 0.163 3.837 11 N -0.719 5.719 12 C 0.696 3.304 13 O -0.640 6.640 14 N -0.625 5.625 15 C 0.105 3.895 16 C -0.107 4.107 17 C -0.125 4.125 18 H 0.081 0.919 19 C -0.135 4.135 20 C 0.041 3.959 21 N -0.669 5.669 22 C 0.066 3.934 23 H 0.074 0.926 24 C 0.138 3.862 25 C -0.190 4.190 26 C -0.160 4.160 27 H 0.266 0.734 28 H 0.063 0.937 29 H 0.032 0.968 30 H 0.409 0.591 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.344 0.656 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.678 -3.193 -17.638 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.147 4.147 3 Si 0.762 3.238 4 H -0.222 1.222 5 H -0.234 1.234 6 H -0.177 1.177 7 C -0.514 4.514 8 H 0.071 0.929 9 C -0.039 4.039 10 C 0.039 3.961 11 N -0.376 5.376 12 C 0.397 3.603 13 O -0.522 6.522 14 N -0.363 5.363 15 C -0.018 4.018 16 C -0.145 4.145 17 C -0.146 4.146 18 H 0.100 0.900 19 C -0.174 4.174 20 C -0.088 4.088 21 N -0.297 5.297 22 C -0.046 4.046 23 H 0.092 0.908 24 C 0.015 3.985 25 C -0.229 4.229 26 C -0.197 4.197 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.249 0.751 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.160 0.840 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.923 -2.599 -17.659 18.275 hybrid contribution -1.162 0.728 0.629 1.509 sum 2.760 -1.871 -17.030 17.353 Atomic orbital electron populations 1.69977 1.07383 1.27751 1.51055 1.25291 0.94695 1.00700 0.93995 0.86278 0.79130 0.81280 0.77086 1.22237 1.23405 1.17699 1.20393 0.89729 0.93526 1.47750 0.92883 1.19448 0.93015 0.95473 0.95948 1.21017 0.95006 0.97410 0.82629 1.45226 1.39810 1.43859 1.08660 1.16141 0.82277 0.80681 0.81206 1.90805 1.31234 1.45529 1.84666 1.47340 1.35675 1.40809 1.12478 1.21842 0.89194 0.90854 0.99899 1.21685 1.03878 0.97164 0.91793 1.22535 0.98015 0.98742 0.95281 0.90038 1.22540 1.00877 0.99862 0.94147 1.23196 0.98131 0.92436 0.95021 1.62826 1.56636 1.08102 1.02151 1.22560 0.97062 0.95714 0.89249 0.90798 1.21297 1.01791 0.91928 0.83498 1.23143 1.00777 1.04515 0.94435 1.22857 1.02245 0.92762 1.01854 0.92445 0.91852 0.95018 0.75103 0.91240 0.90516 0.88161 0.91311 0.90775 0.89611 0.90707 0.89545 0.83967 0.90692 0.90461 0.89181 0.89496 0.89403 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 13.96 21.45 0.30 -53.10 16 2 C 0.05 2.93 5.42 84.65 0.46 3.39 16 3 Si 0.93 46.59 24.04 68.60 1.65 48.24 16 4 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 5 H -0.31 -15.34 7.11 99.48 0.71 -14.64 16 6 H -0.25 -12.04 6.38 99.48 0.63 -11.40 16 7 C -0.48 -24.72 8.87 25.60 0.23 -24.50 16 8 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 9 C -0.04 -1.64 1.41 -52.93 -0.07 -1.72 16 10 C 0.16 7.23 4.35 86.38 0.38 7.60 16 11 N -0.72 -30.07 5.05 -478.54 -2.42 -32.49 16 12 C 0.70 29.00 8.26 179.05 1.48 30.48 16 13 O -0.64 -30.90 15.69 -3.98 -0.06 -30.96 16 14 N -0.63 -20.38 3.01 -836.42 -2.52 -22.90 16 15 C 0.10 2.76 6.25 86.67 0.54 3.30 16 16 C -0.11 -2.02 5.71 30.52 0.17 -1.85 16 17 C -0.13 -2.17 2.53 -10.35 -0.03 -2.20 16 18 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 19 C -0.14 -1.78 6.61 31.26 0.21 -1.58 16 20 C 0.04 0.58 7.56 86.56 0.65 1.23 16 21 N -0.67 -12.50 7.45 -480.68 -3.58 -16.08 16 22 C 0.07 1.45 2.90 45.43 0.13 1.58 16 23 H 0.07 1.94 8.00 -2.39 -0.02 1.92 16 24 C 0.14 3.86 6.21 85.79 0.53 4.39 16 25 C -0.19 -7.31 9.96 30.62 0.30 -7.00 16 26 C -0.16 -5.82 9.93 30.62 0.30 -5.51 16 27 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 28 H 0.06 2.67 8.06 -2.39 -0.02 2.65 16 29 H 0.03 1.57 2.55 -2.39 -0.01 1.56 16 30 H 0.41 16.45 5.45 -92.70 -0.50 15.94 16 31 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 2.18 5.65 -2.39 -0.01 2.17 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.07 1.37 8.03 -2.39 -0.02 1.35 16 35 H 0.07 0.97 8.04 -2.39 -0.02 0.95 16 36 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.34 5.48 8.82 -89.70 -0.79 4.69 16 40 H 0.07 2.50 6.99 -2.38 -0.02 2.48 16 41 H 0.08 1.91 8.13 -2.39 -0.02 1.89 16 42 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 44 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 45 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -66.08 343.21 -1.71 -67.79 By element: Atomic # 1 Polarization: 32.24 SS G_CDS: -0.37 Total: 31.88 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 5.29 Total: 7.62 kcal Atomic # 7 Polarization: -116.35 SS G_CDS: -8.22 Total: -124.56 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.06 Total: -30.96 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.65 Total: 48.24 kcal Total: -66.08 -1.71 -67.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591357581.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.091 kcal (2) G-P(sol) polarization free energy of solvation -66.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds