Wall clock time and date at job start Fri Apr 10 2020 20:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47174 * 2 1 4 4 C 1.52997 * 109.47228 * 176.81459 * 3 2 1 5 5 H 1.08998 * 109.47285 * 54.19164 * 4 3 2 6 6 N 1.46905 * 109.47066 * 294.19280 * 4 3 2 7 7 C 1.46894 * 111.00116 * 150.99296 * 6 4 3 8 8 H 1.08998 * 109.46966 * 327.49148 * 7 6 4 9 9 C 1.52997 * 109.47440 * 87.49587 * 7 6 4 10 10 C 1.53002 * 109.47180 * 207.49683 * 7 6 4 11 11 C 1.52997 * 109.47261 * 64.99725 * 10 7 6 12 12 C 1.50697 * 109.47203 * 180.02562 * 11 10 7 13 13 H 1.07997 * 120.00234 * 359.97438 * 12 11 10 14 14 C 1.37882 * 120.00133 * 180.02562 * 12 11 10 15 15 N 1.31512 * 120.00041 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00045 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46967 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.47038 * 119.99476 * 16 14 12 19 19 H 1.48506 * 109.46799 * 239.99595 * 16 14 12 20 20 C 1.50695 * 109.46836 * 174.19555 * 4 3 2 21 21 C 1.38247 * 119.97315 * 259.99139 * 20 4 3 22 22 C 1.38198 * 120.02542 * 180.02562 * 21 20 4 23 23 C 1.38454 * 119.97594 * 0.02562 * 22 21 20 24 24 F 1.35102 * 120.02962 * 179.97438 * 23 22 21 25 25 C 1.38458 * 119.94899 * 0.25213 * 23 22 21 26 26 C 1.38206 * 119.97301 * 359.51416 * 25 23 22 27 27 H 1.09002 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46982 * 299.99944 * 1 2 3 29 29 H 1.08998 * 109.47284 * 59.99932 * 1 2 3 30 30 H 1.09001 * 109.46982 * 240.00056 * 2 1 3 31 31 H 1.08998 * 109.47284 * 120.00068 * 2 1 3 32 32 H 1.09001 * 109.46674 * 56.81112 * 3 2 1 33 33 H 1.09000 * 109.47136 * 296.81597 * 3 2 1 34 34 H 1.00900 * 110.99987 * 27.03733 * 6 4 3 35 35 H 1.08993 * 109.47407 * 180.02562 * 9 7 6 36 36 H 1.09005 * 109.46697 * 300.00070 * 9 7 6 37 37 H 1.08998 * 109.47399 * 59.99827 * 9 7 6 38 38 H 1.08999 * 109.47352 * 184.99934 * 10 7 6 39 39 H 1.09004 * 109.46757 * 304.99728 * 10 7 6 40 40 H 1.09001 * 109.47376 * 299.99894 * 11 10 7 41 41 H 1.09004 * 109.47233 * 60.00295 * 11 10 7 42 42 H 0.96998 * 120.00381 * 180.02562 * 15 14 12 43 43 H 1.08000 * 119.98652 * 0.03490 * 21 20 4 44 44 H 1.08001 * 120.00727 * 180.02562 * 22 21 20 45 45 H 1.08003 * 120.01598 * 179.74524 * 25 23 22 46 46 H 1.07998 * 119.98314 * 180.25278 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5679 1.4433 0.0802 5 1 3.9741 0.8269 -0.7218 6 7 3.9905 0.8994 1.3778 7 6 5.3042 0.2506 1.2740 8 1 5.4134 -0.1925 0.2842 9 6 6.4053 1.2904 1.4917 10 6 5.4183 -0.8432 2.3378 11 6 4.3982 -1.9458 2.0470 12 6 4.5102 -3.0228 3.0951 13 1 5.2365 -2.9304 3.8889 14 6 3.6860 -4.1268 3.0399 15 7 2.8018 -4.2396 2.0730 16 14 3.8242 -5.4615 4.3395 17 1 4.8875 -5.0985 5.3106 18 1 2.5279 -5.5953 5.0514 19 1 4.1676 -6.7517 3.6893 20 6 4.0777 2.8542 -0.0632 21 6 4.5683 3.2910 -1.2796 22 6 5.0365 4.5845 -1.4121 23 6 5.0147 5.4428 -0.3260 24 9 5.4726 6.7073 -0.4542 25 6 4.5284 5.0024 0.8933 26 6 4.0562 3.7099 1.0223 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6307 1.9725 0.8601 33 1 1.7241 1.9396 -0.9171 34 1 3.3001 0.2615 1.7446 35 1 7.3801 0.8091 1.4142 36 1 6.3240 2.0697 0.7338 37 1 6.2961 1.7335 2.4815 38 1 6.4235 -1.2642 2.3197 39 1 5.2211 -0.4158 3.3209 40 1 3.3930 -1.5248 2.0652 41 1 4.5955 -2.3732 1.0638 42 1 2.2217 -5.0161 2.0343 43 1 4.5855 2.6213 -2.1267 44 1 5.4194 4.9256 -2.3627 45 1 4.5147 5.6698 1.7424 46 1 3.6731 3.3676 1.9722 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172485437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:06:39 Heat of formation + Delta-G solvation = -66.857764 kcal Electronic energy + Delta-G solvation = -23896.839436 eV Core-core repulsion = 20505.845616 eV Total energy + Delta-G solvation = -3390.993820 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 293.185 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.82569 -40.62127 -38.53614 -36.34765 -34.95247 -33.25679 -31.99660 -31.26357 -30.36651 -28.15394 -26.95351 -24.73545 -23.92231 -23.26685 -22.29980 -21.19846 -21.05820 -18.55403 -18.50439 -17.36887 -17.00023 -16.58096 -16.51240 -16.38363 -16.21728 -15.53815 -15.14549 -14.76582 -14.42921 -14.33541 -14.28998 -14.25839 -13.83685 -13.52553 -13.40223 -13.19227 -12.98921 -12.96456 -12.86009 -12.62315 -12.40457 -12.29075 -12.16865 -11.85623 -11.73334 -11.65360 -11.46110 -11.44542 -11.21058 -10.90670 -10.51840 -9.94990 -9.41249 -9.31503 -8.17751 -6.27100 0.24833 0.40066 1.39091 1.40637 1.52648 2.41799 2.70348 3.15041 3.25462 3.37616 3.76677 3.91500 4.01148 4.05798 4.13374 4.17426 4.28409 4.37105 4.48018 4.48879 4.53380 4.63508 4.72129 4.80194 4.81474 4.89387 5.01500 5.04583 5.05373 5.09403 5.12873 5.17778 5.25469 5.26358 5.29324 5.36516 5.41021 5.46259 5.50736 5.57074 5.67426 5.79134 5.87973 6.02840 6.28433 6.31503 6.51994 6.88736 7.41385 8.92919 Molecular weight = 293.19amu Principal moments of inertia in cm(-1) A = 0.020386 B = 0.003649 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.155398 B = 7672.290124 C = 8620.275177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C -0.106 4.106 4 C 0.125 3.875 5 H 0.048 0.952 6 N -0.678 5.678 7 C 0.093 3.907 8 H 0.028 0.972 9 C -0.126 4.126 10 C -0.104 4.104 11 C 0.030 3.970 12 C -0.541 4.541 13 H 0.054 0.946 14 C 0.005 3.995 15 N -0.925 5.925 16 Si 0.956 3.044 17 H -0.265 1.265 18 H -0.278 1.278 19 H -0.280 1.280 20 C -0.075 4.075 21 C -0.094 4.094 22 C -0.154 4.154 23 C 0.073 3.927 24 F -0.152 7.152 25 C -0.160 4.160 26 C -0.061 4.061 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.346 0.654 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.055 0.945 40 H 0.005 0.995 41 H -0.017 1.017 42 H 0.262 0.738 43 H 0.143 0.857 44 H 0.149 0.851 45 H 0.143 0.857 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 17.235 -6.716 18.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C -0.143 4.143 4 C 0.015 3.985 5 H 0.066 0.934 6 N -0.313 5.313 7 C -0.016 4.016 8 H 0.046 0.954 9 C -0.183 4.183 10 C -0.142 4.142 11 C -0.007 4.007 12 C -0.579 4.579 13 H 0.073 0.927 14 C -0.193 4.193 15 N -0.565 5.565 16 Si 0.782 3.218 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.206 1.206 20 C -0.076 4.076 21 C -0.112 4.112 22 C -0.173 4.173 23 C 0.054 3.946 24 F -0.131 7.131 25 C -0.178 4.178 26 C -0.080 4.080 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.168 0.832 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.023 0.977 41 H 0.001 0.999 42 H 0.070 0.930 43 H 0.161 0.839 44 H 0.166 0.834 45 H 0.161 0.839 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.668 17.753 -6.547 18.933 hybrid contribution -0.161 -1.725 0.103 1.735 sum 0.507 16.028 -6.444 17.282 Atomic orbital electron populations 1.21678 0.94655 1.01373 1.02377 1.21560 0.97133 0.96845 1.01121 1.21734 0.92785 0.96324 1.03478 1.20507 0.95205 0.91839 0.90904 0.93422 1.60661 1.04555 1.41119 1.24929 1.21534 0.90224 0.93155 0.96725 0.95367 1.21722 0.96588 0.98105 1.01928 1.21685 0.99277 0.95030 0.98241 1.18992 0.94193 0.92944 0.94545 1.21695 1.18935 1.05592 1.11716 0.92748 1.25849 0.95016 1.00594 0.97835 1.70075 1.22544 1.30235 1.33663 0.85527 0.78163 0.78861 0.79269 1.18942 1.20417 1.20633 1.19934 0.98660 0.95343 0.93646 1.21070 0.97223 0.95278 0.97676 1.21227 1.03270 0.93968 0.98842 1.17926 1.01102 0.79718 0.95899 1.91459 1.87001 1.37895 1.96698 1.21322 1.01965 0.97762 0.96786 1.20924 0.96490 0.91245 0.99298 0.93840 0.92320 0.91235 0.92994 0.93968 0.90767 0.89767 0.83169 0.92695 0.92619 0.92461 0.92932 0.92655 0.97660 0.99883 0.92959 0.83938 0.83352 0.83876 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.59 9.91 71.98 0.71 -2.88 16 2 C -0.13 -3.69 5.83 30.60 0.18 -3.51 16 3 C -0.11 -2.49 4.74 30.59 0.15 -2.35 16 4 C 0.13 3.21 2.24 44.17 0.10 3.31 16 5 H 0.05 1.31 7.18 -2.39 -0.02 1.29 16 6 N -0.68 -20.56 5.41 -473.33 -2.56 -23.12 16 7 C 0.09 3.07 2.65 44.92 0.12 3.18 16 8 H 0.03 0.99 7.34 -2.39 -0.02 0.97 16 9 C -0.13 -3.49 9.25 71.98 0.67 -2.83 16 10 C -0.10 -4.18 4.73 30.59 0.14 -4.04 16 11 C 0.03 1.53 4.81 29.85 0.14 1.67 16 12 C -0.54 -30.26 9.11 25.60 0.23 -30.03 16 13 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 14 C 0.01 0.30 5.46 84.66 0.46 0.76 16 15 N -0.92 -54.60 13.29 21.45 0.28 -54.32 16 16 Si 0.96 43.89 29.54 68.60 2.03 45.91 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 20 C -0.07 -1.69 3.20 -19.86 -0.06 -1.76 16 21 C -0.09 -1.88 9.67 22.26 0.22 -1.66 16 22 C -0.15 -3.00 10.03 22.31 0.22 -2.77 16 23 C 0.07 1.58 7.30 22.37 0.16 1.74 16 24 F -0.15 -3.49 17.27 44.97 0.78 -2.72 16 25 C -0.16 -3.36 10.03 22.31 0.22 -3.14 16 26 C -0.06 -1.37 9.19 22.26 0.20 -1.17 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.04 1.50 5.65 -2.39 -0.01 1.49 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.35 12.08 4.30 -89.69 -0.39 11.70 16 35 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 1.46 6.46 -2.38 -0.02 1.45 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 40 H 0.01 0.27 5.68 -2.39 -0.01 0.26 16 41 H -0.02 -0.96 8.14 -2.38 -0.02 -0.98 16 42 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.14 2.37 8.04 -2.91 -0.02 2.35 16 44 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 45 H 0.14 2.55 8.06 -2.91 -0.02 2.52 16 46 H 0.14 3.15 7.71 -2.91 -0.02 3.12 16 Total: -1.00 -60.06 369.06 4.96 -55.11 By element: Atomic # 1 Polarization: 24.03 SS G_CDS: 0.56 Total: 24.59 kcal Atomic # 6 Polarization: -49.32 SS G_CDS: 3.87 Total: -45.45 kcal Atomic # 7 Polarization: -75.16 SS G_CDS: -2.28 Total: -77.44 kcal Atomic # 9 Polarization: -3.49 SS G_CDS: 0.78 Total: -2.72 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -60.06 4.96 -55.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172485437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.751 kcal (2) G-P(sol) polarization free energy of solvation -60.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds