Wall clock time and date at job start Fri Apr 10 2020 20:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86794 * 120.00088 * 2 1 4 4 H 1.48509 * 109.47229 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47372 * 299.99203 * 3 2 1 6 6 H 1.48499 * 109.47540 * 59.99843 * 3 2 1 7 7 C 1.37877 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00515 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99840 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47243 * 179.97438 * 9 7 2 11 11 O 1.45195 * 109.47080 * 179.97438 * 10 9 7 12 12 C 1.34231 * 117.00102 * 179.97438 * 11 10 9 13 13 O 1.20827 * 119.99585 * 0.02562 * 12 11 10 14 14 C 1.50699 * 120.00242 * 180.02562 * 12 11 10 15 15 H 1.09002 * 109.46959 * 60.00359 * 14 12 11 16 16 C 1.53000 * 109.47083 * 300.00144 * 14 12 11 17 17 C 1.52996 * 109.47328 * 300.00241 * 16 14 12 18 18 C 1.53002 * 109.46891 * 299.99597 * 17 16 14 19 19 C 1.52997 * 109.46978 * 60.00410 * 18 17 16 20 20 H 1.09001 * 109.47375 * 59.99908 * 19 18 17 21 21 C 1.52997 * 109.47232 * 179.97438 * 19 18 17 22 22 F 1.39901 * 109.47234 * 179.97438 * 21 19 18 23 23 F 1.39895 * 109.47162 * 300.00013 * 21 19 18 24 24 F 1.39900 * 109.47367 * 59.99832 * 21 19 18 25 25 C 1.52997 * 109.47078 * 180.02562 * 14 12 11 26 26 H 0.97001 * 119.99838 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.47275 * 59.99608 * 9 7 2 28 28 H 1.09004 * 109.46862 * 299.99303 * 9 7 2 29 29 H 1.09009 * 109.46946 * 59.99821 * 10 9 7 30 30 H 1.09000 * 109.47188 * 300.00124 * 10 9 7 31 31 H 1.09004 * 109.46724 * 60.00424 * 16 14 12 32 32 H 1.09001 * 109.47194 * 179.97438 * 16 14 12 33 33 H 1.09004 * 109.47108 * 179.97438 * 17 16 14 34 34 H 1.08992 * 109.47554 * 59.99639 * 17 16 14 35 35 H 1.09001 * 109.47142 * 300.00176 * 18 17 16 36 36 H 1.09002 * 109.47097 * 180.02562 * 18 17 16 37 37 H 1.08998 * 109.47533 * 179.97438 * 25 14 12 38 38 H 1.08996 * 109.47853 * 300.00179 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 8 1.5192 -4.9195 0.0011 12 6 2.2502 -6.0453 0.0007 13 8 3.4568 -5.9821 0.0003 14 6 1.5660 -7.3881 0.0007 15 1 0.9430 -7.4783 -0.8891 16 6 0.6923 -7.5152 1.2502 17 6 1.5668 -7.3884 2.4992 18 6 2.6205 -8.4978 2.4987 19 6 3.4943 -8.3706 1.2493 20 1 3.9892 -7.3994 1.2493 21 6 4.5484 -9.4795 1.2491 22 9 5.3470 -9.3636 0.1063 23 9 5.3479 -9.3631 2.3911 24 9 3.9137 -10.7263 1.2493 25 6 2.6197 -8.4973 0.0008 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8904 29 1 2.8719 -3.6044 0.8906 30 1 2.8719 -3.6044 -0.8894 31 1 -0.0585 -6.7249 1.2505 32 1 0.1970 -8.4862 1.2500 33 1 0.9442 -7.4785 3.3894 34 1 2.0617 -6.4173 2.4992 35 1 2.1256 -9.4690 2.4987 36 1 3.2432 -8.4077 3.3888 37 1 2.1250 -9.4685 0.0012 38 1 3.2426 -8.4070 -0.8891 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919371128.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:04 Heat of formation + Delta-G solvation = -292.139716 kcal Electronic energy + Delta-G solvation = -24557.876016 eV Core-core repulsion = 20369.331951 eV Total energy + Delta-G solvation = -4188.544065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.123 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -51.11599 -48.61206 -48.56541 -41.96419 -39.23807 -37.42181 -35.46452 -33.28326 -32.28204 -32.00337 -27.31060 -26.69585 -25.11355 -23.22349 -22.99873 -22.30517 -20.81950 -19.33971 -19.25412 -18.84417 -18.70280 -17.95835 -17.41987 -17.01436 -16.47641 -16.25948 -15.55543 -15.48034 -15.31881 -15.03013 -14.91998 -14.76205 -14.72451 -14.58664 -14.41613 -14.32271 -13.60085 -13.35870 -13.27635 -13.13057 -12.91303 -12.88032 -12.64110 -12.57771 -12.17691 -12.03915 -11.74252 -11.49153 -11.44119 -11.36345 -11.28284 -10.99939 -10.62431 -8.28118 -6.41052 1.19972 1.40591 1.40657 1.54056 1.75269 1.80355 2.39481 2.76792 2.99115 3.06464 3.08544 3.58045 3.64964 3.66553 4.00644 4.07421 4.11200 4.20800 4.22856 4.27425 4.35966 4.52260 4.58827 4.69753 4.83608 4.88567 4.99831 5.04582 5.15035 5.24072 5.25945 5.35478 5.46566 5.61276 5.76319 6.06142 6.71503 6.77820 7.28928 8.84521 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.028380 B = 0.003264 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.373903 B = 8576.045437 C = 8950.799634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.971 3.029 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.551 4.551 8 H 0.062 0.938 9 C 0.032 3.968 10 C 0.091 3.909 11 O -0.361 6.361 12 C 0.454 3.546 13 O -0.540 6.540 14 C -0.071 4.071 15 H 0.142 0.858 16 C -0.111 4.111 17 C -0.123 4.123 18 C -0.113 4.113 19 C -0.148 4.148 20 H 0.110 0.890 21 C 0.458 3.542 22 F -0.192 7.192 23 F -0.191 7.191 24 F -0.179 7.179 25 C -0.098 4.098 26 H 0.268 0.732 27 H 0.006 0.994 28 H 0.007 0.993 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.033 0.967 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.122 0.878 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -22.129 3.385 22.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.589 4.589 8 H 0.080 0.920 9 C -0.005 4.005 10 C 0.018 3.982 11 O -0.278 6.278 12 C 0.299 3.701 13 O -0.430 6.430 14 C -0.090 4.090 15 H 0.160 0.840 16 C -0.148 4.148 17 C -0.160 4.160 18 C -0.150 4.150 19 C -0.167 4.167 20 H 0.128 0.872 21 C 0.404 3.596 22 F -0.174 7.174 23 F -0.173 7.173 24 F -0.160 7.160 25 C -0.135 4.135 26 H 0.077 0.923 27 H 0.025 0.975 28 H 0.026 0.974 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.052 0.948 35 H 0.120 0.880 36 H 0.093 0.907 37 H 0.140 0.860 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.733 -21.984 3.388 22.411 hybrid contribution 0.925 1.164 -0.107 1.491 sum 3.658 -20.820 3.281 21.392 Atomic orbital electron populations 1.70089 1.07723 1.28202 1.50400 1.25920 0.95824 1.03276 0.94074 0.85308 0.78864 0.78256 0.78074 1.18807 1.20014 1.19999 1.21405 0.93615 0.91396 1.52457 0.91954 1.18963 0.94297 0.90563 0.96701 1.23095 0.94985 0.79494 1.00628 1.86518 1.42555 1.15715 1.82967 1.24640 0.86516 0.87934 0.71001 1.90556 1.17086 1.88340 1.47056 1.21257 0.97961 0.85395 1.04406 0.84037 1.21659 0.96997 1.05606 0.90574 1.21574 0.97386 0.97166 0.99889 1.21638 0.97112 1.01461 0.94785 1.22803 0.95799 0.97389 1.00727 0.87221 1.20693 0.82487 0.83658 0.72779 1.93165 1.76316 1.96110 1.51780 1.93152 1.76248 1.96116 1.51746 1.93155 1.81550 1.45179 1.96153 1.21521 0.96310 0.99633 0.96080 0.92314 0.97510 0.97418 0.92573 0.92554 0.90523 0.86309 0.88522 0.94830 0.88049 0.90745 0.86010 0.90704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.78 13.29 21.45 0.28 -54.49 16 2 C 0.01 0.46 5.46 84.66 0.46 0.92 16 3 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -31.10 9.11 25.60 0.23 -30.87 16 8 H 0.06 3.40 7.74 -2.91 -0.02 3.37 16 9 C 0.03 1.69 5.35 29.85 0.16 1.85 16 10 C 0.09 4.04 5.40 71.98 0.39 4.43 16 11 O -0.36 -13.68 10.12 -51.42 -0.52 -14.20 16 12 C 0.45 14.21 5.74 71.24 0.41 14.62 16 13 O -0.54 -19.55 13.41 21.96 0.29 -19.25 16 14 C -0.07 -1.39 3.11 -11.54 -0.04 -1.43 16 15 H 0.14 2.10 8.14 -2.39 -0.02 2.08 16 16 C -0.11 -1.77 5.39 30.59 0.16 -1.60 16 17 C -0.12 -2.21 5.70 30.59 0.17 -2.03 16 18 C -0.11 -1.84 4.96 30.59 0.15 -1.69 16 19 C -0.15 -3.06 1.87 -10.81 -0.02 -3.08 16 20 H 0.11 3.00 5.52 -2.39 -0.01 2.99 16 21 C 0.46 9.79 2.69 71.98 0.19 9.99 16 22 F -0.19 -4.74 16.80 44.97 0.76 -3.99 16 23 F -0.19 -4.45 16.80 44.97 0.76 -3.70 16 24 F -0.18 -3.36 16.28 44.97 0.73 -2.63 16 25 C -0.10 -1.72 4.13 30.58 0.13 -1.59 16 26 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 27 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 2.47 8.14 -2.38 -0.02 2.45 16 30 H 0.06 2.49 8.13 -2.39 -0.02 2.47 16 31 H 0.08 1.42 8.11 -2.39 -0.02 1.40 16 32 H 0.12 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.10 1.38 8.14 -2.38 -0.02 1.37 16 34 H 0.03 0.83 7.22 -2.39 -0.02 0.81 16 35 H 0.10 1.18 7.80 -2.39 -0.02 1.16 16 36 H 0.07 1.24 7.80 -2.39 -0.02 1.22 16 37 H 0.12 1.35 7.80 -2.39 -0.02 1.33 16 38 H 0.07 1.48 7.76 -2.39 -0.02 1.46 16 Total: -1.00 -66.26 321.51 7.80 -58.46 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.07 Total: 4.86 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: 2.41 Total: -10.48 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.28 Total: -54.49 kcal Atomic # 8 Polarization: -33.23 SS G_CDS: -0.23 Total: -33.45 kcal Atomic # 9 Polarization: -12.55 SS G_CDS: 2.24 Total: -10.31 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -66.26 7.80 -58.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919371128.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -233.678 kcal (2) G-P(sol) polarization free energy of solvation -66.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -299.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -292.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds