Wall clock time and date at job start Fri Apr 10 2020 20:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.46909 * 269.72379 * 3 2 1 5 5 H 1.48497 * 109.46701 * 29.72288 * 3 2 1 6 6 H 1.48500 * 109.46867 * 149.72394 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 O 1.45196 * 109.47336 * 179.97438 * 10 9 7 12 12 C 1.34232 * 117.00336 * 180.02562 * 11 10 9 13 13 O 1.20826 * 119.99538 * 359.97438 * 12 11 10 14 14 C 1.50698 * 120.00409 * 179.97438 * 12 11 10 15 15 H 1.09000 * 109.46824 * 300.00145 * 14 12 11 16 16 C 1.53001 * 109.46827 * 59.99941 * 14 12 11 17 17 C 1.52999 * 109.46815 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.46994 * 299.99960 * 17 16 14 19 19 C 1.52993 * 109.47414 * 60.00139 * 18 17 16 20 20 H 1.09000 * 109.47034 * 59.99730 * 19 18 17 21 21 C 1.52994 * 109.47457 * 180.02562 * 19 18 17 22 22 F 1.39892 * 109.47079 * 60.00144 * 21 19 18 23 23 F 1.39909 * 109.47283 * 179.97438 * 21 19 18 24 24 F 1.39903 * 109.47011 * 300.00106 * 21 19 18 25 25 C 1.52994 * 109.47198 * 180.02562 * 14 12 11 26 26 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 27 27 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 28 28 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 29 29 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 30 30 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 31 31 H 1.08999 * 109.47287 * 299.99952 * 16 14 12 32 32 H 1.09000 * 109.47252 * 60.00466 * 16 14 12 33 33 H 1.08990 * 109.47610 * 59.99899 * 17 16 14 34 34 H 1.09001 * 109.46868 * 180.02562 * 17 16 14 35 35 H 1.09005 * 109.47304 * 180.02562 * 18 17 16 36 36 H 1.09000 * 109.47240 * 299.99996 * 18 17 16 37 37 H 1.09000 * 109.47280 * 299.99779 * 25 14 12 38 38 H 1.09001 * 109.47125 * 60.00248 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5026 2.0430 -1.4001 5 1 1.4437 2.6543 0.6942 6 1 3.5438 1.4418 0.7059 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 8 1.5193 -4.9195 0.0227 12 6 2.2503 -6.0453 0.0283 13 8 3.4569 -5.9820 0.0276 14 6 1.5661 -7.3880 0.0354 15 1 0.9437 -7.4738 0.9261 16 6 0.6916 -7.5214 -1.2129 17 6 -0.0035 -8.8843 -1.2053 18 6 1.0499 -9.9940 -1.1996 19 6 1.9245 -9.8606 0.0486 20 1 1.3019 -9.9461 0.9392 21 6 2.9782 -10.9698 0.0539 22 9 3.7771 -10.8595 -1.0891 23 9 3.7783 -10.8475 1.1951 24 9 2.3431 -12.2164 0.0605 25 6 2.6198 -8.4973 0.0414 26 1 -0.4850 0.8401 -0.0041 27 1 0.6241 -2.5528 0.9015 28 1 0.6247 -2.5609 -0.8785 29 1 2.8719 -3.6083 -0.8736 30 1 2.8719 -3.6004 0.9064 31 1 -0.0591 -6.7311 -1.2167 32 1 1.3141 -7.4355 -2.1035 33 1 -0.6260 -8.9698 -0.3148 34 1 -0.6262 -8.9795 -2.0949 35 1 0.5547 -10.9650 -1.1947 36 1 1.6724 -9.9085 -2.0903 37 1 3.2427 -8.4116 -0.8490 38 1 3.2425 -8.4021 0.9310 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919371136.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:09 Heat of formation + Delta-G solvation = -281.494920 kcal Electronic energy + Delta-G solvation = -23925.031736 eV Core-core repulsion = 19736.949264 eV Total energy + Delta-G solvation = -4188.082472 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.123 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -50.35575 -47.84526 -47.80346 -40.44117 -38.43938 -36.11027 -33.39692 -32.41411 -31.45307 -30.20083 -26.02514 -25.45308 -23.95887 -22.41336 -21.23417 -20.71662 -20.06463 -18.53790 -18.48354 -18.10290 -17.07789 -16.19362 -16.00750 -15.84861 -15.31082 -14.86130 -14.69226 -14.52439 -14.43348 -14.22352 -14.09988 -13.97890 -13.91516 -13.43437 -13.07742 -12.81643 -12.61689 -12.36619 -12.20921 -11.75815 -11.61011 -11.25003 -11.16534 -11.03259 -10.87657 -10.77686 -10.73482 -10.61214 -10.14725 -9.67847 -9.62061 -9.32141 -8.46872 -6.13041 -4.17420 2.45367 2.49990 3.04516 3.26894 3.33121 3.37367 3.48940 3.71684 3.78378 4.32227 4.35749 4.42669 4.52174 4.69244 4.76738 4.91035 4.91804 5.02708 5.20911 5.23675 5.30076 5.56975 5.59765 5.62359 5.73511 5.81152 5.98328 6.03430 6.06046 6.06951 6.60555 6.95720 7.52674 7.58997 7.83826 8.14537 8.22999 8.88135 9.47186 10.98432 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.037420 B = 0.002759 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.092887 B =10144.864344 C =10603.610764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.354 6.354 12 C 0.459 3.541 13 O -0.516 6.516 14 C -0.075 4.075 15 H 0.111 0.889 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.122 4.122 19 C -0.131 4.131 20 H 0.118 0.882 21 C 0.455 3.545 22 F -0.181 7.181 23 F -0.183 7.183 24 F -0.185 7.185 25 C -0.105 4.105 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 -23.461 -1.128 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.270 6.270 12 C 0.301 3.699 13 O -0.405 6.405 14 C -0.094 4.094 15 H 0.129 0.871 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.159 4.159 19 C -0.150 4.150 20 H 0.136 0.864 21 C 0.401 3.599 22 F -0.163 7.163 23 F -0.164 7.164 24 F -0.166 7.166 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.322 -23.290 -1.123 23.320 hybrid contribution 0.832 0.796 0.095 1.156 sum 1.154 -22.494 -1.028 22.547 Atomic orbital electron populations 1.69972 1.06092 1.27012 1.49768 1.24984 0.94920 0.99394 0.94832 0.86472 0.79781 0.82798 0.78268 1.20467 1.21029 1.19706 1.20983 0.93186 0.90140 1.52225 0.92272 1.19162 0.94162 0.89026 0.98843 1.23656 0.96391 0.78804 1.00943 1.86514 1.42371 1.15767 1.82395 1.23373 0.86458 0.87248 0.72790 1.90641 1.15812 1.88319 1.45753 1.20919 0.97414 0.88796 1.02315 0.87140 1.21603 0.99209 0.98451 0.96185 1.21483 0.97106 0.93033 1.03295 1.21681 0.97711 1.00518 0.96029 1.22508 0.95512 0.93072 1.03942 0.86434 1.20578 0.82590 0.83223 0.73544 1.93178 1.75907 1.96038 1.51132 1.93195 1.75928 1.95924 1.51354 1.93172 1.81782 1.45461 1.96231 1.21485 0.97248 0.89949 1.05563 0.92694 0.95364 0.95367 0.92321 0.92335 0.89366 0.90962 0.91006 0.90374 0.90358 0.90300 0.89457 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.65 5.35 -27.89 -0.15 0.50 16 10 C 0.07 1.63 5.40 37.16 0.20 1.83 16 11 O -0.35 -6.77 10.12 -39.26 -0.40 -7.17 16 12 C 0.46 7.53 7.26 36.00 0.26 7.79 16 13 O -0.52 -9.86 15.73 -18.75 -0.29 -10.16 16 14 C -0.08 -0.83 2.63 -91.77 -0.24 -1.07 16 15 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 16 C -0.12 -1.10 5.14 -26.73 -0.14 -1.24 16 17 C -0.11 -0.74 5.92 -26.73 -0.16 -0.90 16 18 C -0.12 -0.81 4.96 -26.73 -0.13 -0.95 16 19 C -0.13 -1.01 2.17 -90.60 -0.20 -1.20 16 20 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 21 C 0.45 4.18 2.69 37.15 0.10 4.28 16 22 F -0.18 -1.88 16.28 2.25 0.04 -1.84 16 23 F -0.18 -1.91 16.80 2.25 0.04 -1.87 16 24 F -0.19 -1.70 16.80 2.25 0.04 -1.66 16 25 C -0.10 -1.06 3.53 -26.71 -0.09 -1.15 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 31 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.45 7.80 -51.93 -0.41 0.04 16 36 H 0.08 0.56 7.80 -51.93 -0.41 0.16 16 37 H 0.09 0.98 7.76 -51.93 -0.40 0.57 16 38 H 0.09 0.94 7.76 -51.93 -0.40 0.54 16 LS Contribution 328.03 15.07 4.94 4.94 Total: -1.00 -30.93 328.03 -6.26 -37.19 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -5.38 Total: -4.76 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.96 Total: -5.53 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.38 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.69 Total: -17.32 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.11 Total: -5.38 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.93 -6.26 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919371136.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -244.305 kcal (2) G-P(sol) polarization free energy of solvation -30.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds