Wall clock time and date at job start Fri Apr 10 2020 20:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47021 * 270.00115 * 3 2 1 5 5 H 1.48504 * 109.46890 * 29.99602 * 3 2 1 6 6 H 1.48495 * 109.47067 * 149.99839 * 3 2 1 7 7 C 1.37879 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46974 * 180.02562 * 9 7 2 11 11 O 1.45208 * 109.47022 * 179.97438 * 10 9 7 12 12 C 1.34228 * 116.99735 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00551 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99912 * 179.97438 * 12 11 10 15 15 H 1.09001 * 109.46944 * 60.00018 * 14 12 11 16 16 C 1.53008 * 109.47347 * 300.00591 * 14 12 11 17 17 C 1.52996 * 109.46896 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47217 * 60.00199 * 17 16 14 19 19 C 1.52997 * 109.46978 * 299.99394 * 18 17 16 20 20 H 1.09001 * 109.46922 * 300.00374 * 19 18 17 21 21 C 1.52997 * 109.47232 * 180.02562 * 19 18 17 22 22 F 1.39905 * 109.47157 * 59.99991 * 21 19 18 23 23 F 1.39900 * 109.47010 * 300.00382 * 21 19 18 24 24 F 1.39897 * 109.47422 * 180.02562 * 21 19 18 25 25 C 1.52996 * 109.47165 * 60.00120 * 19 18 17 26 26 H 0.96999 * 120.00136 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47332 * 59.99694 * 9 7 2 28 28 H 1.09008 * 109.46917 * 299.99731 * 9 7 2 29 29 H 1.09003 * 109.47714 * 59.99678 * 10 9 7 30 30 H 1.09003 * 109.47131 * 299.99780 * 10 9 7 31 31 H 1.09000 * 109.47188 * 59.99769 * 16 14 12 32 32 H 1.09001 * 109.46630 * 299.99618 * 16 14 12 33 33 H 1.09001 * 109.47364 * 299.99408 * 17 16 14 34 34 H 1.09004 * 109.46785 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.46838 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47387 * 60.00083 * 18 17 16 37 37 H 1.09001 * 109.46997 * 59.99740 * 25 19 18 38 38 H 1.08996 * 109.47452 * 180.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 8 1.5192 -4.9196 0.0024 12 6 2.2503 -6.0453 0.0030 13 8 3.4569 -5.9821 0.0035 14 6 1.5662 -7.3880 0.0043 15 1 0.9432 -7.4791 -0.8854 16 6 0.6923 -7.5141 1.2539 17 6 -0.0027 -8.8771 1.2547 18 6 1.0507 -9.9867 1.2551 19 6 1.9245 -9.8607 0.0055 20 1 1.3014 -9.9514 -0.8842 21 6 2.9775 -10.9707 0.0055 22 9 2.3416 -12.2168 0.0061 23 9 3.7773 -10.8548 1.1475 24 9 3.7769 -10.8551 -1.1368 25 6 2.6195 -8.4977 0.0045 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8713 -3.6040 0.8922 30 1 2.8726 -3.6047 -0.8877 31 1 -0.0584 -6.7238 1.2535 32 1 1.3153 -7.4229 2.1436 33 1 -0.6258 -8.9678 0.3650 34 1 -0.6249 -8.9670 2.1452 35 1 0.5555 -10.9577 1.2552 36 1 1.6737 -9.8960 2.1448 37 1 3.2426 -8.4070 0.8943 38 1 3.2417 -8.4077 -0.8859 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919371137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:11 Heat of formation + Delta-G solvation = -281.501032 kcal Electronic energy + Delta-G solvation = -23924.777888 eV Core-core repulsion = 19736.695151 eV Total energy + Delta-G solvation = -4188.082737 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.123 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.35599 -47.84545 -47.80358 -40.44139 -38.44092 -36.11018 -33.39770 -32.41480 -31.45286 -30.20137 -26.02569 -25.45327 -23.95968 -22.41243 -21.23426 -20.71688 -20.06468 -18.53812 -18.48363 -18.10303 -17.07769 -16.19399 -16.00701 -15.84836 -15.31124 -14.86155 -14.69243 -14.52483 -14.43359 -14.22368 -14.10039 -13.97902 -13.91537 -13.43360 -13.07817 -12.81684 -12.61637 -12.36633 -12.20979 -11.75795 -11.60950 -11.25066 -11.16578 -11.03183 -10.87706 -10.78300 -10.72751 -10.61247 -10.14747 -9.67844 -9.62123 -9.32133 -8.46926 -6.13024 -4.17439 2.45317 2.49980 3.04531 3.26898 3.33136 3.37344 3.48922 3.71692 3.78374 4.32265 4.35744 4.42720 4.52185 4.69296 4.76749 4.91026 4.91845 5.02742 5.20910 5.23698 5.30059 5.56968 5.59737 5.62392 5.73516 5.81147 5.98330 6.03420 6.06013 6.06925 6.60535 6.95666 7.52677 7.58969 7.83823 8.14530 8.22970 8.88126 9.47197 10.98458 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.037427 B = 0.002759 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.951215 B =10145.900952 C =10603.803557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.075 3.925 11 O -0.354 6.354 12 C 0.459 3.541 13 O -0.516 6.516 14 C -0.075 4.075 15 H 0.111 0.889 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.122 4.122 19 C -0.131 4.131 20 H 0.118 0.882 21 C 0.455 3.545 22 F -0.185 7.185 23 F -0.181 7.181 24 F -0.183 7.183 25 C -0.105 4.105 26 H 0.263 0.737 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 -23.453 1.260 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.002 3.998 11 O -0.270 6.270 12 C 0.301 3.699 13 O -0.405 6.405 14 C -0.095 4.095 15 H 0.129 0.871 16 C -0.154 4.154 17 C -0.149 4.149 18 C -0.159 4.159 19 C -0.150 4.150 20 H 0.136 0.864 21 C 0.401 3.599 22 F -0.166 7.166 23 F -0.163 7.163 24 F -0.164 7.164 25 C -0.142 4.142 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.323 -23.283 1.268 23.319 hybrid contribution 0.831 0.796 -0.121 1.157 sum 1.154 -22.487 1.147 22.546 Atomic orbital electron populations 1.69968 1.06094 1.27015 1.49769 1.24980 0.94918 0.99393 0.94831 0.86473 0.79783 0.82804 0.78267 1.20465 1.21031 1.19706 1.20983 0.93187 0.90137 1.52228 0.92271 1.19163 0.94162 0.89028 0.98845 1.23657 0.96389 0.78799 1.00946 1.86516 1.42366 1.15768 1.82396 1.23368 0.86458 0.87249 0.72789 1.90641 1.15810 1.88321 1.45753 1.20920 0.97417 0.88806 1.02307 0.87142 1.21604 0.99214 0.98456 0.96174 1.21485 0.97106 0.93033 1.03295 1.21683 0.97715 1.00530 0.96009 1.22500 0.95526 0.93073 1.03935 0.86440 1.20579 0.82575 0.83238 0.73544 1.93173 1.81747 1.45493 1.96233 1.93180 1.75866 1.95987 1.51226 1.93192 1.75963 1.95990 1.51252 1.21474 0.97258 0.89951 1.05558 0.92691 0.95374 0.95356 0.92324 0.92328 0.89367 0.90963 0.91005 0.90373 0.90361 0.90292 0.89456 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.12 13.29 55.43 0.74 -25.38 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.26 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 7 C -0.53 -14.72 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 10 C 0.07 1.63 5.40 37.16 0.20 1.83 16 11 O -0.35 -6.77 10.12 -39.25 -0.40 -7.17 16 12 C 0.46 7.53 7.26 36.00 0.26 7.79 16 13 O -0.52 -9.86 15.73 -18.75 -0.29 -10.16 16 14 C -0.08 -0.83 2.63 -91.77 -0.24 -1.07 16 15 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 16 C -0.12 -1.10 5.14 -26.73 -0.14 -1.24 16 17 C -0.11 -0.74 5.92 -26.73 -0.16 -0.90 16 18 C -0.12 -0.81 4.96 -26.73 -0.13 -0.95 16 19 C -0.13 -1.01 2.16 -90.62 -0.20 -1.20 16 20 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 21 C 0.45 4.18 2.69 37.16 0.10 4.28 16 22 F -0.19 -1.70 16.80 2.25 0.04 -1.66 16 23 F -0.18 -1.88 16.28 2.25 0.04 -1.84 16 24 F -0.18 -1.91 16.80 2.25 0.04 -1.87 16 25 C -0.10 -1.06 3.53 -26.73 -0.09 -1.15 16 26 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 27 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.03 0.76 8.14 -51.92 -0.42 0.34 16 29 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 30 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 31 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.45 7.80 -51.93 -0.41 0.04 16 36 H 0.08 0.56 7.80 -51.93 -0.41 0.16 16 37 H 0.09 0.98 7.76 -51.93 -0.40 0.57 16 38 H 0.09 0.94 7.76 -51.93 -0.40 0.54 16 LS Contribution 328.04 15.07 4.94 4.94 Total: -1.00 -30.92 328.04 -6.26 -37.19 By element: Atomic # 1 Polarization: 0.62 SS G_CDS: -5.38 Total: -4.76 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -0.96 Total: -5.53 kcal Atomic # 7 Polarization: -26.12 SS G_CDS: 0.74 Total: -25.38 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.69 Total: -17.32 kcal Atomic # 9 Polarization: -5.49 SS G_CDS: 0.11 Total: -5.38 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -30.92 -6.26 -37.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919371137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -244.314 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -275.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -281.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds