Wall clock time and date at job start Fri Apr 10 2020 20:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00105 * 2 1 4 4 H 1.48499 * 109.47021 * 270.00115 * 3 2 1 5 5 H 1.48504 * 109.46890 * 29.99602 * 3 2 1 6 6 H 1.48495 * 109.47067 * 149.99839 * 3 2 1 7 7 C 1.37879 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99865 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46974 * 180.02562 * 9 7 2 11 11 O 1.45208 * 109.47022 * 179.97438 * 10 9 7 12 12 C 1.34228 * 116.99735 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00551 * 0.02562 * 12 11 10 14 14 C 1.50696 * 119.99912 * 179.97438 * 12 11 10 15 15 H 1.09001 * 109.46944 * 60.00018 * 14 12 11 16 16 C 1.53008 * 109.47347 * 300.00591 * 14 12 11 17 17 C 1.52996 * 109.46896 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47217 * 60.00199 * 17 16 14 19 19 C 1.52997 * 109.46978 * 299.99394 * 18 17 16 20 20 H 1.09001 * 109.46922 * 300.00374 * 19 18 17 21 21 C 1.52997 * 109.47232 * 180.02562 * 19 18 17 22 22 F 1.39905 * 109.47157 * 59.99991 * 21 19 18 23 23 F 1.39900 * 109.47010 * 300.00382 * 21 19 18 24 24 F 1.39897 * 109.47422 * 180.02562 * 21 19 18 25 25 C 1.52996 * 109.47165 * 60.00120 * 19 18 17 26 26 H 0.96999 * 120.00136 * 0.02562 * 1 2 3 27 27 H 1.08994 * 109.47332 * 59.99694 * 9 7 2 28 28 H 1.09008 * 109.46917 * 299.99731 * 9 7 2 29 29 H 1.09003 * 109.47714 * 59.99678 * 10 9 7 30 30 H 1.09003 * 109.47131 * 299.99780 * 10 9 7 31 31 H 1.09000 * 109.47188 * 59.99769 * 16 14 12 32 32 H 1.09001 * 109.46630 * 299.99618 * 16 14 12 33 33 H 1.09001 * 109.47364 * 299.99408 * 17 16 14 34 34 H 1.09004 * 109.46785 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.46838 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47387 * 60.00083 * 18 17 16 37 37 H 1.09001 * 109.46997 * 59.99740 * 25 19 18 38 38 H 1.08996 * 109.47452 * 180.02562 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6620 0.0018 11 8 1.5192 -4.9196 0.0024 12 6 2.2503 -6.0453 0.0030 13 8 3.4569 -5.9821 0.0035 14 6 1.5662 -7.3880 0.0043 15 1 0.9432 -7.4791 -0.8854 16 6 0.6923 -7.5141 1.2539 17 6 -0.0027 -8.8771 1.2547 18 6 1.0507 -9.9867 1.2551 19 6 1.9245 -9.8607 0.0055 20 1 1.3014 -9.9514 -0.8842 21 6 2.9775 -10.9707 0.0055 22 9 2.3416 -12.2168 0.0061 23 9 3.7773 -10.8548 1.1475 24 9 3.7769 -10.8551 -1.1368 25 6 2.6195 -8.4977 0.0045 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6240 -2.5567 0.8904 29 1 2.8713 -3.6040 0.8922 30 1 2.8726 -3.6047 -0.8877 31 1 -0.0584 -6.7238 1.2535 32 1 1.3153 -7.4229 2.1436 33 1 -0.6258 -8.9678 0.3650 34 1 -0.6249 -8.9670 2.1452 35 1 0.5555 -10.9577 1.2552 36 1 1.6737 -9.8960 2.1448 37 1 3.2426 -8.4070 0.8943 38 1 3.2417 -8.4077 -0.8859 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919371137.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:10 Heat of formation + Delta-G solvation = -297.398964 kcal Electronic energy + Delta-G solvation = -23925.467274 eV Core-core repulsion = 19736.695151 eV Total energy + Delta-G solvation = -4188.772123 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.123 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -51.10326 -48.58963 -48.57204 -41.74277 -39.37327 -37.62457 -35.46105 -33.29091 -32.34743 -31.97109 -27.32037 -26.70103 -25.20343 -23.11061 -22.97581 -21.87365 -20.99400 -19.29683 -19.23425 -19.19606 -18.55054 -17.93513 -17.53474 -17.05661 -16.48157 -16.15994 -15.64812 -15.50707 -15.25702 -15.00493 -14.93008 -14.74890 -14.71347 -14.59033 -14.50266 -14.36202 -13.68899 -13.56566 -13.13033 -13.07442 -12.92404 -12.61817 -12.60236 -12.43774 -12.33074 -11.93386 -11.73655 -11.58281 -11.49873 -11.45008 -11.35388 -11.11591 -10.61855 -8.27898 -6.40970 1.15786 1.40531 1.42269 1.52881 1.62611 1.87027 2.39385 2.78277 2.99640 3.05927 3.06577 3.47099 3.62325 3.77310 3.93771 4.06411 4.09526 4.20794 4.25002 4.29123 4.30642 4.34822 4.55974 4.68976 4.87461 4.95540 4.99959 5.05202 5.20735 5.24108 5.28749 5.41574 5.46348 5.55673 5.74254 6.06052 6.70003 6.74534 7.28873 8.84590 Molecular weight = 294.12amu Principal moments of inertia in cm(-1) A = 0.037427 B = 0.002759 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.951215 B =10145.900952 C =10603.803557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.552 4.552 8 H 0.063 0.937 9 C 0.032 3.968 10 C 0.090 3.910 11 O -0.360 6.360 12 C 0.455 3.545 13 O -0.545 6.545 14 C -0.066 4.066 15 H 0.138 0.862 16 C -0.117 4.117 17 C -0.103 4.103 18 C -0.120 4.120 19 C -0.121 4.121 20 H 0.144 0.856 21 C 0.453 3.547 22 F -0.183 7.183 23 F -0.191 7.191 24 F -0.192 7.192 25 C -0.102 4.102 26 H 0.268 0.732 27 H 0.008 0.992 28 H 0.008 0.992 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.287 -24.343 1.125 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.191 4.191 3 Si 0.795 3.205 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.081 0.919 9 C -0.005 4.005 10 C 0.016 3.984 11 O -0.277 6.277 12 C 0.300 3.700 13 O -0.436 6.436 14 C -0.085 4.085 15 H 0.156 0.844 16 C -0.154 4.154 17 C -0.140 4.140 18 C -0.158 4.158 19 C -0.141 4.141 20 H 0.162 0.838 21 C 0.399 3.601 22 F -0.164 7.164 23 F -0.172 7.172 24 F -0.173 7.173 25 C -0.139 4.139 26 H 0.077 0.923 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.057 -24.199 1.136 24.226 hybrid contribution 0.957 0.996 -0.072 1.383 sum 0.900 -23.204 1.063 23.245 Atomic orbital electron populations 1.70081 1.07736 1.28295 1.50325 1.25934 0.95840 1.03310 0.94059 0.85347 0.78544 0.77884 0.78681 1.19546 1.20304 1.18860 1.21379 0.93647 0.91377 1.52582 0.91900 1.18962 0.94279 0.90476 0.96773 1.23142 0.95078 0.79384 1.00757 1.86512 1.42479 1.15706 1.82961 1.24524 0.86379 0.87923 0.71216 1.90626 1.17275 1.88608 1.47050 1.21090 0.97717 0.85258 1.04391 0.84429 1.21638 0.98672 1.00321 0.94801 1.21461 0.96958 0.90683 1.04908 1.21712 0.97484 1.01495 0.95060 1.22507 0.95087 0.90628 1.05839 0.83818 1.20807 0.82604 0.83752 0.72923 1.93176 1.81590 1.45452 1.96186 1.93164 1.76285 1.96052 1.51748 1.93176 1.76370 1.96055 1.51738 1.21404 0.96957 0.91164 1.04423 0.92290 0.97402 0.97375 0.92506 0.92421 0.90233 0.91867 0.89209 0.89011 0.88513 0.90965 0.91002 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.87 13.29 21.45 0.28 -54.59 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 6 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 7 C -0.55 -31.22 9.11 25.60 0.23 -30.99 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 9 C 0.03 1.72 5.35 29.85 0.16 1.88 16 10 C 0.09 4.01 5.40 71.98 0.39 4.40 16 11 O -0.36 -13.90 10.12 -51.40 -0.52 -14.42 16 12 C 0.45 14.88 7.26 71.23 0.52 15.39 16 13 O -0.55 -21.06 15.73 21.96 0.35 -20.72 16 14 C -0.07 -1.35 2.63 -11.54 -0.03 -1.39 16 15 H 0.14 2.15 8.14 -2.39 -0.02 2.13 16 16 C -0.12 -2.02 5.14 30.60 0.16 -1.86 16 17 C -0.10 -1.04 5.92 30.59 0.18 -0.86 16 18 C -0.12 -1.25 4.96 30.59 0.15 -1.10 16 19 C -0.12 -1.57 2.16 -10.80 -0.02 -1.59 16 20 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 21 C 0.45 7.59 2.69 71.98 0.19 7.78 16 22 F -0.18 -2.96 16.80 44.97 0.76 -2.20 16 23 F -0.19 -3.80 16.28 44.97 0.73 -3.07 16 24 F -0.19 -3.80 16.80 44.97 0.76 -3.04 16 25 C -0.10 -1.94 3.53 30.59 0.11 -1.83 16 26 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 27 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.01 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.06 2.53 8.13 -2.39 -0.02 2.51 16 30 H 0.06 2.56 8.13 -2.39 -0.02 2.54 16 31 H 0.08 1.54 8.11 -2.39 -0.02 1.52 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.10 0.73 7.80 -2.39 -0.02 0.71 16 36 H 0.07 0.88 7.80 -2.39 -0.02 0.86 16 37 H 0.07 1.59 7.76 -2.39 -0.02 1.57 16 38 H 0.08 1.62 7.76 -2.39 -0.02 1.60 16 Total: -1.00 -67.31 328.04 7.94 -59.38 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.06 Total: 2.51 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: 2.50 Total: -9.27 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: 0.28 Total: -54.59 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.17 Total: -35.14 kcal Atomic # 9 Polarization: -10.55 SS G_CDS: 2.24 Total: -8.31 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -67.31 7.94 -59.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919371137.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -238.023 kcal (2) G-P(sol) polarization free energy of solvation -67.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -305.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -297.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds