Wall clock time and date at job start Fri Apr 10 2020 20:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.08999 * 110.64490 * 34.29657 * 10 9 7 12 12 C 1.55165 * 110.72000 * 271.15446 * 10 9 7 13 13 C 1.54912 * 101.58248 * 206.13624 * 12 10 9 14 14 N 1.47425 * 104.83031 * 37.00710 * 13 12 10 15 15 C 1.34782 * 125.64662 * 155.91189 * 14 13 12 16 16 O 1.21281 * 120.00062 * 179.97438 * 15 14 13 17 17 C 1.50698 * 119.99936 * 359.96741 * 15 14 13 18 18 C 1.52996 * 109.47066 * 180.02562 * 17 15 14 19 19 C 1.50698 * 109.47066 * 179.97438 * 18 17 15 20 20 C 1.38431 * 122.53997 * 90.00372 * 19 18 17 21 21 C 1.33386 * 114.92255 * 179.97438 * 20 19 18 22 22 S 1.75885 * 109.59442 * 359.97438 * 21 20 19 23 23 C 1.33388 * 122.54283 * 269.71197 * 19 18 17 24 24 C 1.47316 * 108.74055 * 335.71317 * 14 13 12 25 25 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 26 26 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 27 27 H 1.08997 * 110.99809 * 324.20743 * 12 10 9 28 28 H 1.08998 * 111.00542 * 88.05892 * 12 10 9 29 29 H 1.08990 * 110.36712 * 155.84555 * 13 12 10 30 30 H 1.09000 * 110.36204 * 278.06271 * 13 12 10 31 31 H 1.09004 * 109.47484 * 300.00904 * 17 15 14 32 32 H 1.08997 * 109.47282 * 60.00349 * 17 15 14 33 33 H 1.08997 * 109.47438 * 299.99922 * 18 17 15 34 34 H 1.08998 * 109.46865 * 60.00434 * 18 17 15 35 35 H 1.07998 * 122.53893 * 359.97438 * 20 19 18 36 36 H 1.08000 * 125.20701 * 180.02562 * 21 20 19 37 37 H 1.08000 * 125.20284 * 0.02562 * 23 19 18 38 38 H 1.08997 * 110.06928 * 241.87297 * 24 14 13 39 39 H 1.09000 * 109.84708 * 120.60976 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 2.9794 -3.5686 0.5739 12 6 2.3589 -4.1169 -1.4526 13 6 2.4687 -5.6520 -1.2756 14 7 1.4457 -5.9900 -0.2693 15 6 0.8570 -7.1934 -0.1212 16 8 0.0245 -7.3587 0.7451 17 6 1.2330 -8.3334 -1.0322 18 6 0.4245 -9.5761 -0.6545 19 6 0.8002 -10.7159 -1.5659 20 6 1.8249 -11.5986 -1.2709 21 6 2.0270 -12.5505 -2.1831 22 16 0.8799 -12.3563 -3.5022 23 6 0.1667 -10.9542 -2.7153 24 6 1.1762 -4.7964 0.5510 25 1 -0.4850 -0.8401 -0.0004 26 1 0.3556 -2.3880 -0.0016 27 1 1.5387 -3.8586 -2.1223 28 1 3.2993 -3.6964 -1.8087 29 1 2.2567 -6.1585 -2.2170 30 1 3.4614 -5.9222 -0.9153 31 1 1.0170 -8.0597 -2.0650 32 1 2.2969 -8.5461 -0.9279 33 1 0.6403 -9.8499 0.3782 34 1 -0.6393 -9.3631 -0.7593 35 1 2.4161 -11.5223 -0.3702 36 1 2.7792 -13.3229 -2.1210 37 1 -0.6570 -10.3740 -3.1042 38 1 1.4330 -4.9923 1.5921 39 1 0.1241 -4.5227 0.4718 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968918086.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:16 Heat of formation + Delta-G solvation = -13.229174 kcal Electronic energy + Delta-G solvation = -20466.912374 eV Core-core repulsion = 17307.365140 eV Total energy + Delta-G solvation = -3159.547234 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18468 -39.39530 -38.65444 -36.25427 -33.98003 -33.18913 -30.97241 -30.28052 -29.14281 -26.49600 -25.34022 -24.18327 -23.17424 -21.75236 -20.21655 -19.62160 -19.54581 -18.62035 -18.01835 -17.37388 -16.81560 -16.42308 -16.25330 -15.81995 -15.46613 -14.78496 -14.68783 -14.32142 -14.16340 -13.90171 -13.68054 -13.46637 -13.33020 -13.16874 -12.92186 -12.79137 -12.75092 -12.44261 -12.41001 -11.99943 -11.86076 -11.80107 -11.61925 -11.31323 -10.97968 -10.94798 -9.75256 -9.69526 -9.27130 -9.17174 -8.40515 -5.36544 0.11320 0.79245 1.10433 1.56493 1.59856 1.69831 1.70813 1.84218 1.98499 2.71992 3.34700 3.45132 3.61954 3.76056 3.91953 3.96932 4.08233 4.17007 4.22109 4.30107 4.31503 4.41185 4.53109 4.61305 4.64347 4.70379 4.78916 4.84807 4.93502 5.08289 5.13261 5.17462 5.20613 5.35313 5.52360 5.60021 5.60064 6.45872 6.49753 7.03593 7.08132 7.92973 8.06050 9.10906 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.041133 B = 0.002410 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.562818 B =11616.473474 C =11800.497056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.978 5.978 2 C -0.107 4.107 3 Si 1.132 2.868 4 H -0.287 1.287 5 H -0.267 1.267 6 H -0.296 1.296 7 C -0.327 4.327 8 H 0.075 0.925 9 N -0.744 5.744 10 C 0.169 3.831 11 H 0.069 0.931 12 C -0.145 4.145 13 C 0.107 3.893 14 N -0.616 5.616 15 C 0.519 3.481 16 O -0.592 6.592 17 C -0.114 4.114 18 C -0.040 4.040 19 C -0.106 4.106 20 C -0.142 4.142 21 C -0.210 4.210 22 S 0.093 5.907 23 C -0.220 4.220 24 C 0.108 3.892 25 H 0.243 0.757 26 H 0.358 0.642 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.152 0.848 36 H 0.185 0.815 37 H 0.171 0.829 38 H 0.061 0.939 39 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.079 -26.187 -7.889 28.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.298 4.298 3 Si 0.956 3.044 4 H -0.214 1.214 5 H -0.192 1.192 6 H -0.223 1.223 7 C -0.459 4.459 8 H 0.093 0.907 9 N -0.386 5.386 10 C 0.059 3.941 11 H 0.087 0.913 12 C -0.186 4.186 13 C -0.015 4.015 14 N -0.349 5.349 15 C 0.310 3.690 16 O -0.473 6.473 17 C -0.154 4.154 18 C -0.080 4.080 19 C -0.118 4.118 20 C -0.172 4.172 21 C -0.346 4.346 22 S 0.357 5.643 23 C -0.356 4.356 24 C -0.016 4.016 25 H 0.053 0.947 26 H 0.190 0.810 27 H 0.073 0.927 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.170 0.830 36 H 0.202 0.798 37 H 0.188 0.812 38 H 0.079 0.921 39 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 7.447 -25.504 -8.801 27.989 hybrid contribution -0.478 -0.563 1.565 1.731 sum 6.969 -26.067 -7.236 27.935 Atomic orbital electron populations 1.70971 1.07408 1.27866 1.56325 1.27265 0.97052 1.04906 1.00542 0.82577 0.73688 0.71350 0.76771 1.21358 1.19216 1.22292 1.20405 0.92556 0.86439 1.46458 0.90683 1.42587 1.04548 1.01670 1.89761 1.21339 0.93857 0.83595 0.95283 0.91348 1.23346 1.02455 0.94595 0.98206 1.22541 0.91762 0.94987 0.92185 1.48698 1.41685 1.09700 1.34835 1.21203 0.79907 0.83079 0.84809 1.90683 1.35358 1.83424 1.37797 1.21611 1.03550 0.90818 0.99402 1.19939 0.99737 0.90350 0.97995 1.18947 0.97816 0.98904 0.96163 1.20303 0.99496 0.95607 1.01803 1.25912 1.05382 1.05238 0.98019 1.84294 1.29195 1.26718 1.24091 1.25717 1.06856 1.03100 0.99913 1.22022 0.99008 0.85667 0.94897 0.94691 0.81013 0.92742 0.89312 0.87857 0.88594 0.87074 0.86301 0.90887 0.91586 0.83005 0.79772 0.81178 0.92094 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.49 13.70 21.65 0.30 -61.20 16 2 C -0.11 -6.13 5.50 84.86 0.47 -5.66 16 3 Si 1.13 51.10 29.92 68.60 2.05 53.15 16 4 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 6 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 7 C -0.33 -17.84 9.97 84.03 0.84 -17.01 16 8 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.74 -36.91 5.23 -317.33 -1.66 -38.57 16 10 C 0.17 6.40 3.59 46.19 0.17 6.56 16 11 H 0.07 2.56 8.11 -2.39 -0.02 2.54 16 12 C -0.15 -4.39 6.77 31.99 0.22 -4.18 16 13 C 0.11 2.32 6.69 86.86 0.58 2.90 16 14 N -0.62 -17.67 3.33 -811.04 -2.70 -20.37 16 15 C 0.52 14.79 7.85 87.66 0.69 15.48 16 16 O -0.59 -22.17 16.31 -3.03 -0.05 -22.22 16 17 C -0.11 -2.06 4.69 29.85 0.14 -1.92 16 18 C -0.04 -0.76 4.76 29.85 0.14 -0.62 16 19 C -0.11 -1.74 5.06 -20.92 -0.11 -1.84 16 20 C -0.14 -2.02 9.98 21.22 0.21 -1.81 16 21 C -0.21 -2.60 11.23 66.72 0.75 -1.85 16 22 S 0.09 1.25 23.34 -56.49 -1.32 -0.07 16 23 C -0.22 -3.42 10.98 66.72 0.73 -2.69 16 24 C 0.11 3.90 6.64 86.67 0.58 4.47 16 25 H 0.24 15.33 6.77 -92.71 -0.63 14.70 16 26 H 0.36 19.08 6.37 -92.71 -0.59 18.49 16 27 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.48 16 29 H 0.10 1.64 7.48 -2.39 -0.02 1.62 16 30 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.11 1.66 7.85 -2.39 -0.02 1.64 16 32 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.07 1.51 8.09 -2.39 -0.02 1.49 16 34 H 0.07 1.44 8.07 -2.39 -0.02 1.42 16 35 H 0.15 1.74 8.06 -2.91 -0.02 1.71 16 36 H 0.19 1.37 8.06 -2.91 -0.02 1.34 16 37 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.04 1.69 7.70 -2.39 -0.02 1.68 16 Total: -1.00 -72.37 340.00 2.62 -69.75 By element: Atomic # 1 Polarization: 27.08 SS G_CDS: 0.60 Total: 27.68 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.40 Total: -8.15 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -4.07 Total: -120.14 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.05 Total: -22.22 kcal Atomic # 14 Polarization: 51.10 SS G_CDS: 2.05 Total: 53.15 kcal Atomic # 16 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Total: -72.37 2.62 -69.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968918086.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.522 kcal (2) G-P(sol) polarization free energy of solvation -72.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds