Wall clock time and date at job start Fri Apr 10 2020 20:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32768 * 124.71448 * 2 1 4 4 C 1.44422 * 113.08540 * 180.17970 * 3 2 1 5 5 C 1.47187 * 123.46176 * 179.80876 * 4 3 2 6 6 O 1.21638 * 120.00078 * 185.95109 * 5 4 3 7 7 N 1.34778 * 120.00019 * 5.95267 * 5 4 3 8 8 C 1.47021 * 125.64845 * 354.84068 * 7 5 4 9 9 C 1.54324 * 107.27151 * 181.09595 * 8 7 5 10 10 C 1.55151 * 102.94464 * 22.19231 * 9 8 7 11 11 H 1.09006 * 111.03785 * 82.58421 * 10 9 8 12 12 N 1.46498 * 111.00933 * 206.42690 * 10 9 8 13 13 C 1.36928 * 120.00158 * 198.65299 * 12 10 9 14 14 H 1.08001 * 120.00378 * 359.97438 * 13 12 10 15 15 C 1.38814 * 119.99840 * 179.97438 * 13 12 10 16 16 N 1.31619 * 120.00376 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00082 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47183 * 179.97438 * 17 15 13 19 19 H 1.48506 * 109.46986 * 300.00219 * 17 15 13 20 20 H 1.48505 * 109.46730 * 59.99792 * 17 15 13 21 21 C 1.47428 * 125.64897 * 174.88051 * 7 5 4 22 22 C 1.36012 * 113.07866 * 359.54566 * 4 3 2 23 23 C 1.50697 * 124.59313 * 180.20787 * 22 4 3 24 24 S 1.70447 * 110.81352 * 0.24123 * 22 4 3 25 25 H 1.09001 * 109.47154 * 180.26770 * 1 2 3 26 26 H 1.08996 * 109.46976 * 300.27611 * 1 2 3 27 27 H 1.09006 * 109.46910 * 60.26921 * 1 2 3 28 28 H 1.08002 * 123.45787 * 359.97438 * 3 2 1 29 29 H 1.08998 * 109.88358 * 300.51624 * 8 7 5 30 30 H 1.09003 * 109.88075 * 61.67560 * 8 7 5 31 31 H 1.09009 * 110.71822 * 263.82814 * 9 8 7 32 32 H 1.09004 * 110.71731 * 140.56011 * 9 8 7 33 33 H 0.97000 * 119.99796 * 18.64240 * 12 10 9 34 34 H 0.97003 * 119.99768 * 359.97438 * 16 15 13 35 35 H 1.08999 * 110.36476 * 37.00356 * 21 7 5 36 36 H 1.08995 * 110.36951 * 274.67640 * 21 7 5 37 37 H 1.09005 * 109.46744 * 89.99852 * 23 22 4 38 38 H 1.08993 * 109.47114 * 209.99764 * 23 22 4 39 39 H 1.09000 * 109.46989 * 329.99996 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8002 -0.0042 5 6 4.7201 1.8394 -0.0091 6 8 5.8902 1.5266 -0.1217 7 7 4.3782 3.1375 0.1111 8 6 3.0052 3.6622 0.1466 9 6 3.1045 5.1976 0.2659 10 6 4.5261 5.4973 -0.2785 11 1 4.5269 5.5413 -1.3676 12 7 5.0576 6.7364 0.2947 13 6 6.1009 7.3803 -0.3148 14 1 6.5324 6.9747 -1.2180 15 6 6.6041 8.5547 0.2280 16 7 6.0780 9.0494 1.3284 17 14 8.0280 9.4329 -0.6031 18 1 8.3748 10.6535 0.1682 19 1 9.2048 8.5286 -0.6551 20 1 7.6359 9.8149 -1.9836 21 6 5.3189 4.2666 0.2280 22 6 3.9477 -0.5328 0.0027 23 6 5.3334 -1.1251 0.0049 24 16 2.5064 -1.4427 0.0074 25 1 -0.3633 -1.0277 0.0048 26 1 -0.3633 0.5181 0.8875 27 1 -0.3633 0.5097 -0.8924 28 1 1.8615 2.0939 -0.0004 29 1 2.4823 3.3947 -0.7715 30 1 2.4756 3.2568 1.0088 31 1 3.0161 5.5101 1.3065 32 1 2.3459 5.6820 -0.3491 33 1 4.6702 7.1006 1.1060 34 1 5.3384 8.5936 1.7598 35 1 6.1953 4.0964 -0.3973 36 1 5.6151 4.4076 1.2675 37 1 5.6681 -1.2624 1.0332 38 1 5.3174 -2.0889 -0.5038 39 1 6.0170 -0.4522 -0.5129 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969232332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:19 Heat of formation + Delta-G solvation = -3.627240 kcal Electronic energy + Delta-G solvation = -21184.957737 eV Core-core repulsion = 18025.826874 eV Total energy + Delta-G solvation = -3159.130863 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.45086 -39.10836 -38.07357 -36.35084 -33.97711 -33.43553 -31.17586 -30.53444 -29.09235 -26.77873 -25.66810 -24.51712 -23.96574 -21.84436 -20.76781 -20.21269 -19.52250 -18.26600 -17.40206 -17.28658 -16.61643 -16.27623 -15.94483 -15.62491 -15.32085 -14.92719 -14.75172 -14.46681 -14.17402 -14.14747 -13.94261 -13.84222 -13.72840 -12.98000 -12.86535 -12.74791 -12.66421 -12.51296 -12.43104 -12.34695 -11.90370 -11.83149 -11.63871 -11.26217 -11.04501 -10.85919 -9.88235 -9.52856 -9.37985 -9.20177 -8.43379 -5.39540 -0.26867 0.48792 0.87120 0.94113 1.57719 1.66763 1.83365 1.94949 2.22035 2.68390 3.31564 3.47291 3.50354 3.67942 3.79868 3.90027 4.07836 4.17766 4.21910 4.22663 4.36439 4.47719 4.56771 4.57964 4.64812 4.71538 4.83032 4.84391 4.86738 5.04536 5.06586 5.14928 5.18455 5.21302 5.26677 5.41289 5.57077 6.44886 6.47249 7.01641 7.04383 7.92364 8.02059 9.08380 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.029654 B = 0.003347 C = 0.003070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.006901 B = 8362.499798 C = 9119.423169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.197 4.197 3 C -0.146 4.146 4 C -0.187 4.187 5 C 0.580 3.420 6 O -0.584 6.584 7 N -0.608 5.608 8 C 0.102 3.898 9 C -0.130 4.130 10 C 0.170 3.830 11 H 0.059 0.941 12 N -0.734 5.734 13 C -0.339 4.339 14 H 0.064 0.936 15 C -0.096 4.096 16 N -0.971 5.971 17 Si 1.125 2.875 18 H -0.290 1.290 19 H -0.283 1.283 20 H -0.275 1.275 21 C 0.096 3.904 22 C -0.165 4.165 23 C -0.096 4.096 24 S 0.223 5.777 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.182 0.818 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.366 0.634 34 H 0.247 0.753 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.078 0.922 38 H 0.090 0.910 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.710 -22.406 -3.025 27.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.314 4.314 3 C -0.173 4.173 4 C -0.204 4.204 5 C 0.370 3.630 6 O -0.467 6.467 7 N -0.341 5.341 8 C -0.020 4.020 9 C -0.168 4.168 10 C 0.060 3.940 11 H 0.077 0.923 12 N -0.376 5.376 13 C -0.470 4.470 14 H 0.082 0.918 15 C -0.288 4.288 16 N -0.618 5.618 17 Si 0.949 3.051 18 H -0.216 1.216 19 H -0.209 1.209 20 H -0.201 1.201 21 C -0.030 4.030 22 C -0.286 4.286 23 C -0.155 4.155 24 S 0.490 5.510 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.198 0.802 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.095 0.905 32 H 0.124 0.876 33 H 0.199 0.801 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.097 0.903 38 H 0.109 0.891 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.327 -22.923 -3.211 27.222 hybrid contribution -0.019 0.566 0.403 0.696 sum -14.346 -22.357 -2.807 26.712 Atomic orbital electron populations 1.20484 0.84911 1.04192 1.04424 1.24793 1.01931 0.95380 1.09283 1.22036 0.89755 1.02086 1.03428 1.20017 0.94010 0.92319 1.14005 1.17886 0.87915 0.81350 0.75815 1.90683 1.21284 1.81618 1.53090 1.48351 1.09370 1.04945 1.71416 1.22654 0.82526 0.93319 1.03464 1.22922 0.96520 0.94594 1.02783 1.21388 0.92481 0.83724 0.96441 0.92288 1.42412 1.39619 1.25133 1.30386 1.20352 1.10909 1.07255 1.08526 0.91844 1.27140 1.06106 0.97099 0.98479 1.70997 1.27443 1.42585 1.20775 0.82668 0.72716 0.75066 0.74616 1.21628 1.20937 1.20071 1.22924 0.93497 0.86893 0.99724 1.24728 1.03421 0.96994 1.03451 1.20610 0.90115 1.01237 1.03493 1.82701 0.91146 1.07763 1.69402 0.90138 0.89183 0.89153 0.80176 0.88335 0.88477 0.90451 0.87600 0.80086 0.94266 0.93864 0.93568 0.90340 0.89123 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.35 71.24 0.74 0.06 16 2 C -0.20 -3.08 6.44 24.51 0.16 -2.92 16 3 C -0.15 -2.91 8.71 22.67 0.20 -2.71 16 4 C -0.19 -5.12 5.97 -19.87 -0.12 -5.24 16 5 C 0.58 20.55 7.81 86.59 0.68 21.22 16 6 O -0.58 -24.87 14.28 -4.15 -0.06 -24.93 16 7 N -0.61 -20.30 3.33 -815.91 -2.71 -23.01 16 8 C 0.10 2.41 4.90 86.73 0.43 2.83 16 9 C -0.13 -3.59 6.58 31.78 0.21 -3.38 16 10 C 0.17 6.69 3.69 46.38 0.17 6.86 16 11 H 0.06 2.40 8.13 -2.38 -0.02 2.38 16 12 N -0.73 -36.38 5.27 -316.38 -1.67 -38.05 16 13 C -0.34 -19.12 9.98 84.04 0.84 -18.28 16 14 H 0.06 3.55 7.83 -2.91 -0.02 3.53 16 15 C -0.10 -5.59 5.50 84.86 0.47 -5.12 16 16 N -0.97 -60.19 13.70 21.65 0.30 -59.90 16 17 Si 1.12 52.39 29.92 68.60 2.05 54.44 16 18 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 C 0.10 3.89 6.63 86.86 0.58 4.47 16 22 C -0.17 -4.01 6.34 25.17 0.16 -3.85 16 23 C -0.10 -2.30 9.69 71.24 0.69 -1.61 16 24 S 0.22 3.61 22.94 -56.49 -1.30 2.31 16 25 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.18 2.89 3.79 -2.91 -0.01 2.88 16 29 H 0.10 1.85 6.81 -2.39 -0.02 1.83 16 30 H 0.10 1.85 6.76 -2.39 -0.02 1.83 16 31 H 0.08 2.16 8.00 -2.38 -0.02 2.14 16 32 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.37 18.54 6.54 -92.71 -0.61 17.93 16 34 H 0.25 15.08 6.77 -92.71 -0.63 14.46 16 35 H 0.04 1.97 7.99 -2.39 -0.02 1.95 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.08 2.35 5.81 -2.39 -0.01 2.33 16 Total: -1.00 -74.55 328.76 2.41 -72.14 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.61 Total: 24.67 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 5.19 Total: -7.67 kcal Atomic # 7 Polarization: -116.87 SS G_CDS: -4.09 Total: -120.96 kcal Atomic # 8 Polarization: -24.87 SS G_CDS: -0.06 Total: -24.93 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.05 Total: 54.44 kcal Atomic # 16 Polarization: 3.61 SS G_CDS: -1.30 Total: 2.31 kcal Total: -74.55 2.41 -72.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969232332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.517 kcal (2) G-P(sol) polarization free energy of solvation -74.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds