Wall clock time and date at job start Fri Apr 10 2020 20:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33819 * 124.52186 * 2 1 4 4 C 1.37478 * 115.09921 * 179.76906 * 3 2 1 5 5 C 1.36647 * 113.29747 * 0.45596 * 4 3 2 6 6 C 1.46577 * 125.46146 * 179.83299 * 5 4 3 7 7 O 1.21707 * 119.99924 * 359.72566 * 6 5 4 8 8 N 1.34773 * 120.00536 * 179.71895 * 6 5 4 9 9 C 1.47022 * 125.64468 * 0.04105 * 8 6 5 10 10 C 1.54327 * 107.27369 * 181.02364 * 9 8 6 11 11 C 1.55162 * 102.93707 * 22.19549 * 10 9 8 12 12 H 1.09004 * 111.03529 * 82.58720 * 11 10 9 13 13 N 1.46505 * 111.00454 * 206.42234 * 11 10 9 14 14 C 1.46498 * 119.99770 * 53.65093 * 13 11 10 15 15 C 1.36929 * 120.00023 * 233.65489 * 13 11 10 16 16 H 1.08001 * 120.00398 * 340.18532 * 15 13 11 17 17 C 1.38811 * 120.00175 * 159.91502 * 15 13 11 18 18 N 1.31615 * 119.99907 * 347.51904 * 17 15 13 19 19 Si 1.86799 * 120.00296 * 167.50951 * 17 15 13 20 20 H 1.48504 * 109.46885 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47148 * 120.00373 * 19 17 15 22 22 H 1.48502 * 109.47586 * 240.00211 * 19 17 15 23 23 C 1.47421 * 125.65371 * 180.02562 * 8 6 5 24 24 S 1.70619 * 124.52168 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.47315 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47285 * 300.00307 * 1 2 3 27 27 H 1.08996 * 109.47413 * 59.99956 * 1 2 3 28 28 H 1.08000 * 122.45166 * 0.04500 * 3 2 1 29 29 H 1.08004 * 123.35302 * 180.27111 * 4 3 2 30 30 H 1.08998 * 109.88888 * 300.44219 * 9 8 6 31 31 H 1.08997 * 109.88310 * 61.45619 * 9 8 6 32 32 H 1.08997 * 110.72016 * 263.83770 * 10 9 8 33 33 H 1.08994 * 110.72078 * 140.55537 * 10 9 8 34 34 H 1.09000 * 109.47115 * 264.84279 * 14 13 11 35 35 H 1.08997 * 109.47201 * 24.84219 * 14 13 11 36 36 H 1.09001 * 109.47050 * 144.84495 * 14 13 11 37 37 H 0.97000 * 120.00684 * 179.97438 * 18 17 15 38 38 H 1.08998 * 110.36529 * 37.06261 * 23 8 6 39 39 H 1.09003 * 110.36380 * 274.74749 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 0.0050 5 6 3.9492 -0.4491 -0.0009 6 6 5.3122 -0.9883 -0.0010 7 8 6.2658 -0.2321 -0.0007 8 7 5.5096 -2.3215 -0.0014 9 6 4.4531 -3.3440 -0.0026 10 6 5.1486 -4.7215 0.0236 11 6 6.5474 -4.3933 0.6093 12 1 6.5142 -4.3441 1.6977 13 7 7.5461 -5.3668 0.1607 14 6 7.7197 -5.6319 -1.2696 15 6 8.3173 -6.0289 1.0782 16 1 8.4321 -5.6302 2.0754 17 6 8.9469 -7.2155 0.7286 18 7 8.6156 -7.8328 -0.3856 19 14 10.2646 -7.9362 1.8392 20 1 10.4503 -7.0573 3.0217 21 1 9.8477 -9.2887 2.2888 22 1 11.5431 -8.0359 1.0904 23 6 6.8204 -2.9962 -0.0011 24 16 2.4739 -1.4058 -0.0006 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8429 2.0965 0.0007 29 1 4.3550 1.6702 0.0099 30 1 3.8249 -3.2291 0.8807 31 1 3.8468 -3.2495 -0.9034 32 1 5.2380 -5.1276 -0.9839 33 1 4.6111 -5.4125 0.6730 34 1 7.1279 -6.5025 -1.5522 35 1 7.3882 -4.7659 -1.8425 36 1 8.7720 -5.8246 -1.4784 37 1 9.0558 -8.6619 -0.6302 38 1 7.5305 -2.4450 0.6152 39 1 7.1968 -3.0942 -1.0194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970989626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:27 Heat of formation + Delta-G solvation = 27.117818 kcal Electronic energy + Delta-G solvation = -21222.448386 eV Core-core repulsion = 18064.650729 eV Total energy + Delta-G solvation = -3157.797657 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.85809 -38.22071 -37.11242 -34.87317 -32.33770 -31.58975 -29.85908 -28.54127 -26.92025 -26.08496 -24.15977 -23.17039 -22.39286 -20.80912 -19.36772 -18.39780 -17.84264 -17.09932 -16.04885 -15.90258 -15.62323 -14.81446 -14.52501 -14.22943 -13.93169 -13.48310 -13.40375 -13.32040 -12.76020 -12.62348 -12.54718 -12.43493 -12.14763 -12.00106 -11.95267 -11.63517 -10.98122 -10.90881 -10.63210 -10.52057 -10.48710 -10.27284 -9.96545 -9.89916 -9.80917 -8.84767 -8.70157 -8.61854 -8.33128 -6.87905 -5.78661 -3.24014 0.43366 1.37847 1.80110 2.29664 3.10559 3.29891 3.35654 3.43541 3.45464 4.44157 4.53819 4.63406 4.92046 4.93292 5.17752 5.18474 5.19741 5.27270 5.40746 5.43851 5.53986 5.61359 5.69074 5.83179 5.87924 5.94421 6.04604 6.24427 6.25136 6.31781 6.47672 6.58656 6.74498 6.82093 7.35752 7.65509 7.67909 7.77120 8.24757 8.31484 9.16277 9.78326 10.25304 11.26094 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.035408 B = 0.003381 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.593318 B = 8279.252732 C = 8644.455015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.220 4.220 3 C -0.158 4.158 4 C -0.058 4.058 5 C -0.260 4.260 6 C 0.598 3.402 7 O -0.538 6.538 8 N -0.608 5.608 9 C 0.089 3.911 10 C -0.145 4.145 11 C 0.174 3.826 12 H 0.080 0.920 13 N -0.586 5.586 14 C 0.160 3.840 15 C -0.259 4.259 16 H 0.072 0.928 17 C 0.003 3.997 18 N -0.907 5.907 19 Si 0.907 3.093 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.087 3.913 24 S 0.222 5.778 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.139 0.861 29 H 0.151 0.849 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.032 0.968 35 H 0.000 1.000 36 H 0.048 0.952 37 H 0.253 0.747 38 H 0.075 0.925 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.800 12.851 -0.429 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.339 4.339 3 C -0.189 4.189 4 C -0.091 4.091 5 C -0.381 4.381 6 C 0.387 3.613 7 O -0.417 6.417 8 N -0.341 5.341 9 C -0.035 4.035 10 C -0.186 4.186 11 C 0.063 3.937 12 H 0.098 0.902 13 N -0.306 5.306 14 C 0.016 3.984 15 C -0.388 4.388 16 H 0.090 0.910 17 C -0.195 4.195 18 N -0.552 5.552 19 Si 0.737 3.263 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.216 1.216 23 C -0.037 4.037 24 S 0.490 5.510 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.095 0.905 28 H 0.157 0.843 29 H 0.168 0.832 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.018 0.982 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.094 0.906 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.525 11.578 -0.508 20.184 hybrid contribution 0.829 1.145 0.444 1.481 sum -15.696 12.723 -0.064 20.205 Atomic orbital electron populations 1.20348 0.87740 1.02991 1.03071 1.24623 1.01797 0.99568 1.07908 1.19879 0.92598 0.99482 1.06896 1.20701 0.96129 0.95140 0.97110 1.24601 0.96840 0.97970 1.18648 1.16575 0.86774 0.80874 0.77108 1.90818 1.42006 1.57226 1.51655 1.48315 1.09704 1.04160 1.71905 1.22191 0.90584 0.89677 1.01092 1.23206 0.98721 0.93240 1.03390 1.21403 0.87536 0.87465 0.97331 0.90193 1.43853 1.39024 1.44599 1.03118 1.20842 1.00693 0.94809 0.82038 1.19302 1.22692 1.02118 0.94694 0.90999 1.24978 1.00666 0.96096 0.97770 1.70092 1.42915 1.17598 1.24559 0.86142 0.81522 0.78714 0.79899 1.20262 1.21718 1.21559 1.23071 0.83389 0.95041 1.02242 1.83491 0.93717 1.06162 1.67634 0.91365 0.90503 0.90502 0.84309 0.83160 0.91287 0.91444 0.90189 0.90147 0.94978 0.98154 0.93372 0.93709 0.90624 0.91048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.33 36.00 0.37 -0.16 16 2 C -0.22 -2.10 6.28 -35.86 -0.23 -2.32 16 3 C -0.16 -1.60 10.00 -41.41 -0.41 -2.01 16 4 C -0.06 -0.72 10.01 -40.43 -0.40 -1.12 16 5 C -0.26 -3.64 6.38 -36.80 -0.23 -3.88 16 6 C 0.60 10.36 7.82 -12.90 -0.10 10.26 16 7 O -0.54 -11.02 17.10 5.18 0.09 -10.93 16 8 N -0.61 -10.12 3.33 -172.11 -0.57 -10.70 16 9 C 0.09 1.24 5.18 -3.06 -0.02 1.23 16 10 C -0.15 -2.36 6.51 -24.89 -0.16 -2.52 16 11 C 0.17 3.40 3.54 -65.79 -0.23 3.16 16 12 H 0.08 1.57 7.94 -51.93 -0.41 1.16 16 13 N -0.59 -14.04 2.96 -171.04 -0.51 -14.55 16 14 C 0.16 3.80 7.59 59.85 0.45 4.25 16 15 C -0.26 -6.88 9.65 -15.06 -0.15 -7.03 16 16 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 17 C 0.00 0.09 5.12 -17.43 -0.09 0.00 16 18 N -0.91 -25.61 10.51 55.49 0.58 -25.03 16 19 Si 0.91 21.46 29.57 -169.99 -5.03 16.43 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 C 0.09 1.62 6.46 -2.54 -0.02 1.60 16 24 S 0.22 2.37 18.35 -107.50 -1.97 0.40 16 25 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.15 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.07 0.85 6.82 -51.93 -0.35 0.50 16 31 H 0.07 0.84 6.98 -51.93 -0.36 0.48 16 32 H 0.08 1.37 7.08 -51.93 -0.37 1.00 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.03 0.81 7.42 -51.93 -0.39 0.43 16 35 H 0.00 0.00 6.34 -51.93 -0.33 -0.33 16 36 H 0.05 1.25 7.12 -51.93 -0.37 0.88 16 37 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.08 1.49 8.04 -51.93 -0.42 1.07 16 39 H 0.07 1.39 6.33 -51.93 -0.33 1.06 16 LS Contribution 326.86 15.07 4.93 4.93 Total: -1.00 -30.81 326.86 -9.11 -39.91 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: -5.41 Total: -1.90 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.22 Total: 1.44 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.50 Total: -50.28 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Atomic # 16 Polarization: 2.37 SS G_CDS: -1.97 Total: 0.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.81 -9.11 -39.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970989626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.030 kcal (2) G-P(sol) polarization free energy of solvation -30.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds