Wall clock time and date at job start Fri Apr 10 2020 20:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.33819 * 124.52186 * 2 1 4 4 C 1.37478 * 115.09921 * 179.76906 * 3 2 1 5 5 C 1.36647 * 113.29747 * 0.45596 * 4 3 2 6 6 C 1.46577 * 125.46146 * 179.83299 * 5 4 3 7 7 O 1.21707 * 119.99924 * 359.72566 * 6 5 4 8 8 N 1.34773 * 120.00536 * 179.71895 * 6 5 4 9 9 C 1.47022 * 125.64468 * 0.04105 * 8 6 5 10 10 C 1.54327 * 107.27369 * 181.02364 * 9 8 6 11 11 C 1.55162 * 102.93707 * 22.19549 * 10 9 8 12 12 H 1.09004 * 111.03529 * 82.58720 * 11 10 9 13 13 N 1.46505 * 111.00454 * 206.42234 * 11 10 9 14 14 C 1.46498 * 119.99770 * 53.65093 * 13 11 10 15 15 C 1.36929 * 120.00023 * 233.65489 * 13 11 10 16 16 H 1.08001 * 120.00398 * 340.18532 * 15 13 11 17 17 C 1.38811 * 120.00175 * 159.91502 * 15 13 11 18 18 N 1.31615 * 119.99907 * 347.51904 * 17 15 13 19 19 Si 1.86799 * 120.00296 * 167.50951 * 17 15 13 20 20 H 1.48504 * 109.46885 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47148 * 120.00373 * 19 17 15 22 22 H 1.48502 * 109.47586 * 240.00211 * 19 17 15 23 23 C 1.47421 * 125.65371 * 180.02562 * 8 6 5 24 24 S 1.70619 * 124.52168 * 180.02562 * 2 1 3 25 25 H 1.09005 * 109.47315 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47285 * 300.00307 * 1 2 3 27 27 H 1.08996 * 109.47413 * 59.99956 * 1 2 3 28 28 H 1.08000 * 122.45166 * 0.04500 * 3 2 1 29 29 H 1.08004 * 123.35302 * 180.27111 * 4 3 2 30 30 H 1.08998 * 109.88888 * 300.44219 * 9 8 6 31 31 H 1.08997 * 109.88310 * 61.45619 * 9 8 6 32 32 H 1.08997 * 110.72016 * 263.83770 * 10 9 8 33 33 H 1.08994 * 110.72078 * 140.55537 * 10 9 8 34 34 H 1.09000 * 109.47115 * 264.84279 * 14 13 11 35 35 H 1.08997 * 109.47201 * 24.84219 * 14 13 11 36 36 H 1.09001 * 109.47050 * 144.84495 * 14 13 11 37 37 H 0.97000 * 120.00684 * 179.97438 * 18 17 15 38 38 H 1.08998 * 110.36529 * 37.06261 * 23 8 6 39 39 H 1.09003 * 110.36380 * 274.74749 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2653 1.1025 0.0000 4 6 3.6215 0.8775 0.0050 5 6 3.9492 -0.4491 -0.0009 6 6 5.3122 -0.9883 -0.0010 7 8 6.2658 -0.2321 -0.0007 8 7 5.5096 -2.3215 -0.0014 9 6 4.4531 -3.3440 -0.0026 10 6 5.1486 -4.7215 0.0236 11 6 6.5474 -4.3933 0.6093 12 1 6.5142 -4.3441 1.6977 13 7 7.5461 -5.3668 0.1607 14 6 7.7197 -5.6319 -1.2696 15 6 8.3173 -6.0289 1.0782 16 1 8.4321 -5.6302 2.0754 17 6 8.9469 -7.2155 0.7286 18 7 8.6156 -7.8328 -0.3856 19 14 10.2646 -7.9362 1.8392 20 1 10.4503 -7.0573 3.0217 21 1 9.8477 -9.2887 2.2888 22 1 11.5431 -8.0359 1.0904 23 6 6.8204 -2.9962 -0.0011 24 16 2.4739 -1.4058 -0.0006 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8429 2.0965 0.0007 29 1 4.3550 1.6702 0.0099 30 1 3.8249 -3.2291 0.8807 31 1 3.8468 -3.2495 -0.9034 32 1 5.2380 -5.1276 -0.9839 33 1 4.6111 -5.4125 0.6730 34 1 7.1279 -6.5025 -1.5522 35 1 7.3882 -4.7659 -1.8425 36 1 8.7720 -5.8246 -1.4784 37 1 9.0558 -8.6619 -0.6302 38 1 7.5305 -2.4450 0.6152 39 1 7.1968 -3.0942 -1.0194 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970989626.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:27 Heat of formation + Delta-G solvation = 9.110190 kcal Electronic energy + Delta-G solvation = -21223.229255 eV Core-core repulsion = 18064.650729 eV Total energy + Delta-G solvation = -3158.578526 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.20161 -39.34589 -38.37127 -36.62232 -33.65110 -32.87735 -31.39754 -29.88669 -28.13112 -27.93440 -25.44844 -24.36911 -23.80177 -21.93261 -20.98573 -19.39340 -19.04232 -18.96456 -17.60492 -16.92664 -16.85335 -16.47773 -15.83989 -15.40760 -15.05301 -14.88718 -14.81488 -14.40624 -14.28798 -14.00905 -13.84517 -13.55627 -13.28220 -13.09870 -12.93684 -12.84248 -12.70862 -12.62611 -12.41011 -12.18486 -12.07822 -11.89481 -11.58580 -11.45724 -11.23667 -10.65664 -9.98313 -9.55391 -9.44250 -8.84174 -7.84040 -5.30878 -0.50002 0.49398 0.95153 1.36698 1.47015 1.49477 1.58929 1.80336 2.11640 2.51018 3.26946 3.46190 3.47689 3.83989 3.89383 4.02040 4.09073 4.22264 4.29616 4.36744 4.41188 4.54404 4.69917 4.71201 4.78165 4.84024 4.93395 5.00937 5.11029 5.14941 5.16999 5.24760 5.27779 5.40202 5.45018 5.62963 5.73221 6.29496 6.36698 6.93485 7.13182 7.82791 8.25567 9.19264 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.035408 B = 0.003381 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.593318 B = 8279.252732 C = 8644.455015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.201 4.201 3 C -0.169 4.169 4 C -0.052 4.052 5 C -0.306 4.306 6 C 0.595 3.405 7 O -0.584 6.584 8 N -0.610 5.610 9 C 0.096 3.904 10 C -0.134 4.134 11 C 0.168 3.832 12 H 0.078 0.922 13 N -0.601 5.601 14 C 0.179 3.821 15 C -0.266 4.266 16 H 0.073 0.927 17 C -0.048 4.048 18 N -0.935 5.935 19 Si 0.968 3.032 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.293 1.293 23 C 0.098 3.902 24 S 0.251 5.749 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.093 0.907 28 H 0.165 0.835 29 H 0.145 0.855 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.013 0.987 35 H 0.025 0.975 36 H 0.017 0.983 37 H 0.249 0.751 38 H 0.057 0.943 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.840 13.720 0.119 24.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.321 4.321 3 C -0.198 4.198 4 C -0.087 4.087 5 C -0.426 4.426 6 C 0.386 3.614 7 O -0.467 6.467 8 N -0.342 5.342 9 C -0.027 4.027 10 C -0.174 4.174 11 C 0.059 3.941 12 H 0.096 0.904 13 N -0.322 5.322 14 C 0.035 3.965 15 C -0.396 4.396 16 H 0.091 0.909 17 C -0.244 4.244 18 N -0.581 5.581 19 Si 0.797 3.203 20 H -0.193 1.193 21 H -0.217 1.217 22 H -0.220 1.220 23 C -0.027 4.027 24 S 0.520 5.480 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.182 0.818 29 H 0.162 0.838 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.036 0.964 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.610 12.458 0.054 23.233 hybrid contribution 1.640 0.995 0.280 1.939 sum -17.970 13.453 0.334 22.450 Atomic orbital electron populations 1.20536 0.85088 1.04263 1.04571 1.25099 1.03442 0.98644 1.04943 1.20065 0.91406 1.01060 1.07305 1.20908 0.97416 0.94582 0.95784 1.24350 0.96444 0.99260 1.22519 1.17067 0.87884 0.80482 0.75965 1.90776 1.43897 1.58185 1.53853 1.48327 1.09345 1.04644 1.71900 1.22283 0.89915 0.87203 1.03348 1.23040 0.96577 0.94951 1.02824 1.21513 0.88539 0.86677 0.97418 0.90430 1.43986 1.40318 1.45140 1.02803 1.20528 0.98380 0.95049 0.82591 1.19599 1.22897 1.02065 0.95071 0.90937 1.25681 1.02699 0.96764 0.99217 1.70234 1.43964 1.17852 1.26066 0.85189 0.78797 0.77881 0.78455 1.19326 1.21686 1.22035 1.22714 0.84464 0.94539 1.01005 1.83202 0.91694 1.06068 1.67074 0.90289 0.88900 0.88893 0.81758 0.83765 0.88996 0.89208 0.90952 0.88830 0.96870 0.95620 0.96433 0.94189 0.92438 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.33 71.23 0.74 0.03 16 2 C -0.20 -3.08 6.28 24.68 0.15 -2.92 16 3 C -0.17 -2.91 10.00 21.09 0.21 -2.69 16 4 C -0.05 -1.24 10.01 21.72 0.22 -1.02 16 5 C -0.31 -8.22 6.38 24.07 0.15 -8.07 16 6 C 0.60 20.70 7.82 86.42 0.68 21.38 16 7 O -0.58 -24.80 17.10 -4.37 -0.07 -24.88 16 8 N -0.61 -20.07 3.33 -816.65 -2.72 -22.79 16 9 C 0.10 2.47 5.18 86.73 0.45 2.92 16 10 C -0.13 -4.17 6.51 31.79 0.21 -3.96 16 11 C 0.17 6.56 3.54 46.38 0.16 6.72 16 12 H 0.08 3.05 7.94 -2.38 -0.02 3.03 16 13 N -0.60 -29.24 2.96 -695.05 -2.06 -31.30 16 14 C 0.18 8.67 7.59 127.77 0.97 9.64 16 15 C -0.27 -14.33 9.65 84.03 0.81 -13.52 16 16 H 0.07 3.80 7.83 -2.91 -0.02 3.78 16 17 C -0.05 -2.65 5.12 84.86 0.43 -2.22 16 18 N -0.93 -53.89 10.51 21.65 0.23 -53.67 16 19 Si 0.97 44.63 29.57 68.60 2.03 46.66 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 22 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 23 C 0.10 3.71 6.46 86.85 0.56 4.27 16 24 S 0.25 4.61 18.35 -56.49 -1.04 3.57 16 25 H 0.08 0.52 8.11 -2.38 -0.02 0.50 16 26 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 29 H 0.14 3.46 8.06 -2.91 -0.02 3.43 16 30 H 0.09 1.99 6.82 -2.39 -0.02 1.97 16 31 H 0.09 1.97 6.98 -2.39 -0.02 1.95 16 32 H 0.07 2.39 7.08 -2.39 -0.02 2.38 16 33 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.01 0.68 7.42 -2.39 -0.02 0.66 16 35 H 0.03 1.08 6.34 -2.39 -0.02 1.07 16 36 H 0.02 0.92 7.12 -2.39 -0.02 0.90 16 37 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 38 H 0.06 2.36 8.04 -2.39 -0.02 2.34 16 39 H 0.06 2.41 6.33 -2.39 -0.02 2.39 16 Total: -1.00 -68.41 326.86 3.16 -65.25 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: 1.05 Total: 6.61 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 5.74 Total: 10.55 kcal Atomic # 7 Polarization: -103.21 SS G_CDS: -4.55 Total: -107.76 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.07 Total: -24.88 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 4.61 SS G_CDS: -1.04 Total: 3.57 kcal Total: -68.41 3.16 -65.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970989626.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.357 kcal (2) G-P(sol) polarization free energy of solvation -68.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds