Wall clock time and date at job start Fri Apr 10 2020 20:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33821 * 124.51876 * 2 1 4 4 C 1.37471 * 115.09780 * 179.97438 * 3 2 1 5 5 C 1.36653 * 113.29788 * 0.02562 * 4 3 2 6 6 C 1.46586 * 125.45669 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99670 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99726 * 179.97438 * 6 5 4 9 9 C 1.47015 * 125.64962 * 359.97438 * 8 6 5 10 10 C 1.54323 * 107.27028 * 178.97407 * 9 8 6 11 11 C 1.55152 * 102.94310 * 337.81012 * 10 9 8 12 12 H 1.09002 * 111.00108 * 277.38971 * 11 10 9 13 13 N 1.46502 * 111.00502 * 153.57747 * 11 10 9 14 14 C 1.46501 * 119.99649 * 303.17524 * 13 11 10 15 15 C 1.36935 * 120.00197 * 123.45292 * 13 11 10 16 16 H 1.08006 * 120.00173 * 23.20744 * 15 13 11 17 17 C 1.38811 * 120.00292 * 203.21261 * 15 13 11 18 18 N 1.31619 * 119.99763 * 14.40901 * 17 15 13 19 19 Si 1.86802 * 119.99967 * 194.40989 * 17 15 13 20 20 H 1.48495 * 109.47124 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46902 * 119.99897 * 19 17 15 22 22 H 1.48505 * 109.46898 * 239.99490 * 19 17 15 23 23 C 1.47467 * 125.62761 * 179.97438 * 8 6 5 24 24 S 1.70614 * 124.52322 * 180.27454 * 2 1 3 25 25 H 1.09000 * 109.47611 * 89.99957 * 1 2 3 26 26 H 1.09002 * 109.46990 * 209.99434 * 1 2 3 27 27 H 1.09003 * 109.47292 * 329.99558 * 1 2 3 28 28 H 1.07993 * 122.45134 * 0.02698 * 3 2 1 29 29 H 1.07997 * 123.35448 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.88246 * 59.55666 * 9 8 6 31 31 H 1.09005 * 110.01430 * 298.46543 * 9 8 6 32 32 H 1.09000 * 110.72198 * 219.43696 * 10 9 8 33 33 H 1.09008 * 110.87056 * 96.24294 * 10 9 8 34 34 H 1.09003 * 109.46900 * 95.19270 * 14 13 11 35 35 H 1.08999 * 109.46945 * 215.18139 * 14 13 11 36 36 H 1.08996 * 109.47296 * 335.18924 * 14 13 11 37 37 H 0.97001 * 119.99588 * 180.02562 * 18 17 15 38 38 H 1.08997 * 110.34966 * 85.24835 * 23 8 6 39 39 H 1.09002 * 110.40569 * 322.91419 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8776 0.0006 5 6 3.9492 -0.4491 0.0005 6 6 5.3123 -0.9882 0.0004 7 8 6.2658 -0.2319 0.0010 8 7 5.5096 -2.3214 0.0008 9 6 4.4533 -3.3439 0.0019 10 6 5.1488 -4.7213 -0.0244 11 6 6.5477 -4.3931 -0.6097 12 1 6.5141 -4.3444 -1.6981 13 7 7.5463 -5.3666 -0.1610 14 6 7.7682 -5.5810 1.2712 15 6 8.2763 -6.0719 -1.0801 16 1 8.4091 -5.6819 -2.0785 17 6 8.8455 -7.2882 -0.7288 18 7 8.4618 -7.9011 0.3710 19 14 10.1560 -8.0551 -1.8169 20 1 10.4070 -7.1739 -2.9855 21 1 11.4112 -8.2176 -1.0402 22 1 9.6912 -9.3838 -2.2900 23 6 6.8211 -2.9957 0.0003 24 16 2.4739 -1.4057 -0.0067 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.8428 2.0965 0.0004 29 1 4.3549 1.6703 0.0010 30 1 3.8252 -3.2289 -0.8815 31 1 3.8463 -3.2523 0.9026 32 1 4.6114 -5.4124 -0.6737 33 1 5.2382 -5.1304 0.9820 34 1 7.1737 -6.4303 1.6078 35 1 8.8244 -5.7838 1.4488 36 1 7.4718 -4.6887 1.8224 37 1 8.8599 -8.7509 0.6167 38 1 7.1975 -3.0934 1.0186 39 1 7.5314 -2.4450 -0.6164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970989627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:29 Heat of formation + Delta-G solvation = 25.923243 kcal Electronic energy + Delta-G solvation = -21222.333721 eV Core-core repulsion = 18064.484263 eV Total energy + Delta-G solvation = -3157.849457 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.85687 -38.22033 -37.11035 -34.85684 -32.33285 -31.58497 -29.88312 -28.53805 -26.92213 -26.07901 -24.16263 -23.18280 -22.38087 -20.82290 -19.36325 -18.40099 -17.84679 -17.08870 -16.04185 -15.89674 -15.62164 -14.80739 -14.52319 -14.23490 -13.93631 -13.48762 -13.40298 -13.30205 -12.76554 -12.63138 -12.54886 -12.42690 -12.15750 -12.00536 -11.95687 -11.61754 -11.01239 -10.89784 -10.63216 -10.54741 -10.48345 -10.26725 -9.96109 -9.92039 -9.80620 -8.84313 -8.70544 -8.62242 -8.32890 -6.83904 -5.79748 -3.27176 0.43239 1.37611 1.80924 2.29838 3.10301 3.29720 3.35244 3.43350 3.45454 4.44112 4.54029 4.63317 4.93051 4.94179 5.17203 5.19517 5.20468 5.27871 5.40365 5.44039 5.52960 5.61590 5.69117 5.83488 5.87900 5.94999 6.04845 6.23588 6.25276 6.32381 6.48479 6.59028 6.74357 6.83096 7.29255 7.64576 7.67164 7.75952 8.24554 8.32420 9.15201 9.77500 10.26112 11.24895 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.035230 B = 0.003386 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.595173 B = 8266.442079 C = 8640.404417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.220 4.220 3 C -0.157 4.157 4 C -0.058 4.058 5 C -0.259 4.259 6 C 0.599 3.401 7 O -0.538 6.538 8 N -0.608 5.608 9 C 0.089 3.911 10 C -0.145 4.145 11 C 0.173 3.827 12 H 0.080 0.920 13 N -0.584 5.584 14 C 0.157 3.843 15 C -0.261 4.261 16 H 0.071 0.929 17 C 0.006 3.994 18 N -0.903 5.903 19 Si 0.906 3.094 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.290 1.290 23 C 0.087 3.913 24 S 0.221 5.779 25 H 0.076 0.924 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.139 0.861 29 H 0.151 0.849 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.034 0.966 35 H 0.042 0.958 36 H 0.003 0.997 37 H 0.253 0.747 38 H 0.072 0.928 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.406 13.021 0.471 20.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.340 4.340 3 C -0.187 4.187 4 C -0.091 4.091 5 C -0.380 4.380 6 C 0.387 3.613 7 O -0.417 6.417 8 N -0.341 5.341 9 C -0.036 4.036 10 C -0.186 4.186 11 C 0.063 3.937 12 H 0.098 0.902 13 N -0.304 5.304 14 C 0.012 3.988 15 C -0.391 4.391 16 H 0.088 0.912 17 C -0.193 4.193 18 N -0.547 5.547 19 Si 0.735 3.265 20 H -0.202 1.202 21 H -0.215 1.215 22 H -0.217 1.217 23 C -0.037 4.037 24 S 0.489 5.511 25 H 0.094 0.906 26 H 0.088 0.912 27 H 0.094 0.906 28 H 0.157 0.843 29 H 0.168 0.832 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.022 0.978 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.143 11.748 0.545 19.973 hybrid contribution 0.823 1.112 -0.422 1.446 sum -15.320 12.860 0.124 20.003 Atomic orbital electron populations 1.20360 0.87722 1.03261 1.02878 1.24622 1.01820 0.99588 1.07926 1.19905 0.92594 0.99429 1.06795 1.20702 0.96142 0.95148 0.97156 1.24607 0.96846 0.97962 1.18567 1.16575 0.86772 0.80871 0.77104 1.90817 1.42014 1.57217 1.51668 1.48321 1.09685 1.04166 1.71893 1.22190 0.90578 0.89705 1.01089 1.23218 0.98800 0.93155 1.03411 1.21421 0.87571 0.87401 0.97353 0.90188 1.43808 1.40224 1.43507 1.02862 1.20838 1.00239 0.95209 0.82475 1.19258 1.25666 0.99488 0.94665 0.91167 1.25021 1.00575 0.95893 0.97815 1.70080 1.42985 1.16176 1.25460 0.86173 0.81525 0.78893 0.79872 1.20216 1.21539 1.21697 1.23047 0.83409 0.94972 1.02284 1.83492 0.93716 1.06116 1.67731 0.90572 0.91171 0.90605 0.84314 0.83150 0.91300 0.91430 0.90179 0.90228 0.94724 0.93951 0.97811 0.93695 0.90961 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.31 36.01 0.37 -0.17 16 2 C -0.22 -2.11 6.28 -35.86 -0.23 -2.34 16 3 C -0.16 -1.59 10.00 -41.41 -0.41 -2.00 16 4 C -0.06 -0.72 10.01 -40.43 -0.40 -1.13 16 5 C -0.26 -3.63 6.38 -36.79 -0.23 -3.87 16 6 C 0.60 10.35 7.82 -12.89 -0.10 10.25 16 7 O -0.54 -10.99 17.10 5.19 0.09 -10.90 16 8 N -0.61 -10.12 3.33 -172.07 -0.57 -10.69 16 9 C 0.09 1.24 5.17 -3.07 -0.02 1.23 16 10 C -0.15 -2.38 6.53 -24.90 -0.16 -2.55 16 11 C 0.17 3.40 3.54 -65.79 -0.23 3.16 16 12 H 0.08 1.58 7.95 -51.93 -0.41 1.17 16 13 N -0.58 -13.98 2.96 -171.04 -0.51 -14.49 16 14 C 0.16 3.69 7.75 59.85 0.46 4.15 16 15 C -0.26 -6.95 9.60 -15.06 -0.14 -7.09 16 16 H 0.07 1.83 7.86 -52.48 -0.41 1.42 16 17 C 0.01 0.16 5.07 -17.43 -0.09 0.07 16 18 N -0.90 -25.49 10.82 55.49 0.60 -24.89 16 19 Si 0.91 21.40 29.58 -169.99 -5.03 16.37 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 C 0.09 1.61 6.45 -2.51 -0.02 1.60 16 24 S 0.22 2.38 18.38 -107.50 -1.98 0.40 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 29 H 0.15 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.07 0.86 6.81 -51.93 -0.35 0.50 16 31 H 0.07 0.84 6.99 -51.93 -0.36 0.48 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.38 7.21 -51.92 -0.37 1.01 16 34 H 0.03 0.87 7.34 -51.93 -0.38 0.49 16 35 H 0.04 1.08 7.40 -51.93 -0.38 0.70 16 36 H 0.00 0.07 6.15 -51.93 -0.32 -0.25 16 37 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 38 H 0.07 1.40 6.14 -51.93 -0.32 1.08 16 39 H 0.08 1.48 8.04 -51.93 -0.42 1.07 16 LS Contribution 327.26 15.07 4.93 4.93 Total: -1.00 -30.77 327.26 -9.07 -39.85 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.41 Total: -1.89 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -1.21 Total: 1.31 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.48 Total: -50.07 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.90 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -1.98 Total: 0.40 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.77 -9.07 -39.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970989627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.772 kcal (2) G-P(sol) polarization free energy of solvation -30.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds