Wall clock time and date at job start Fri Apr 10 2020 20:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33821 * 124.51876 * 2 1 4 4 C 1.37471 * 115.09780 * 179.97438 * 3 2 1 5 5 C 1.36653 * 113.29788 * 0.02562 * 4 3 2 6 6 C 1.46586 * 125.45669 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99670 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99726 * 179.97438 * 6 5 4 9 9 C 1.47015 * 125.64962 * 359.97438 * 8 6 5 10 10 C 1.54323 * 107.27028 * 178.97407 * 9 8 6 11 11 C 1.55152 * 102.94310 * 337.81012 * 10 9 8 12 12 H 1.09002 * 111.00108 * 277.38971 * 11 10 9 13 13 N 1.46502 * 111.00502 * 153.57747 * 11 10 9 14 14 C 1.46501 * 119.99649 * 303.17524 * 13 11 10 15 15 C 1.36935 * 120.00197 * 123.45292 * 13 11 10 16 16 H 1.08006 * 120.00173 * 23.20744 * 15 13 11 17 17 C 1.38811 * 120.00292 * 203.21261 * 15 13 11 18 18 N 1.31619 * 119.99763 * 14.40901 * 17 15 13 19 19 Si 1.86802 * 119.99967 * 194.40989 * 17 15 13 20 20 H 1.48495 * 109.47124 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.46902 * 119.99897 * 19 17 15 22 22 H 1.48505 * 109.46898 * 239.99490 * 19 17 15 23 23 C 1.47467 * 125.62761 * 179.97438 * 8 6 5 24 24 S 1.70614 * 124.52322 * 180.27454 * 2 1 3 25 25 H 1.09000 * 109.47611 * 89.99957 * 1 2 3 26 26 H 1.09002 * 109.46990 * 209.99434 * 1 2 3 27 27 H 1.09003 * 109.47292 * 329.99558 * 1 2 3 28 28 H 1.07993 * 122.45134 * 0.02698 * 3 2 1 29 29 H 1.07997 * 123.35448 * 180.02562 * 4 3 2 30 30 H 1.09000 * 109.88246 * 59.55666 * 9 8 6 31 31 H 1.09005 * 110.01430 * 298.46543 * 9 8 6 32 32 H 1.09000 * 110.72198 * 219.43696 * 10 9 8 33 33 H 1.09008 * 110.87056 * 96.24294 * 10 9 8 34 34 H 1.09003 * 109.46900 * 95.19270 * 14 13 11 35 35 H 1.08999 * 109.46945 * 215.18139 * 14 13 11 36 36 H 1.08996 * 109.47296 * 335.18924 * 14 13 11 37 37 H 0.97001 * 119.99588 * 180.02562 * 18 17 15 38 38 H 1.08997 * 110.34966 * 85.24835 * 23 8 6 39 39 H 1.09002 * 110.40569 * 322.91419 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8776 0.0006 5 6 3.9492 -0.4491 0.0005 6 6 5.3123 -0.9882 0.0004 7 8 6.2658 -0.2319 0.0010 8 7 5.5096 -2.3214 0.0008 9 6 4.4533 -3.3439 0.0019 10 6 5.1488 -4.7213 -0.0244 11 6 6.5477 -4.3931 -0.6097 12 1 6.5141 -4.3444 -1.6981 13 7 7.5463 -5.3666 -0.1610 14 6 7.7682 -5.5810 1.2712 15 6 8.2763 -6.0719 -1.0801 16 1 8.4091 -5.6819 -2.0785 17 6 8.8455 -7.2882 -0.7288 18 7 8.4618 -7.9011 0.3710 19 14 10.1560 -8.0551 -1.8169 20 1 10.4070 -7.1739 -2.9855 21 1 11.4112 -8.2176 -1.0402 22 1 9.6912 -9.3838 -2.2900 23 6 6.8211 -2.9957 0.0003 24 16 2.4739 -1.4057 -0.0067 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3634 0.8900 0.5139 28 1 1.8428 2.0965 0.0004 29 1 4.3549 1.6703 0.0010 30 1 3.8252 -3.2289 -0.8815 31 1 3.8463 -3.2523 0.9026 32 1 4.6114 -5.4124 -0.6737 33 1 5.2382 -5.1304 0.9820 34 1 7.1737 -6.4303 1.6078 35 1 8.8244 -5.7838 1.4488 36 1 7.4718 -4.6887 1.8224 37 1 8.8599 -8.7509 0.6167 38 1 7.1975 -3.0934 1.0186 39 1 7.5314 -2.4450 -0.6164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970989627.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:29 Heat of formation + Delta-G solvation = 7.975046 kcal Electronic energy + Delta-G solvation = -21223.112013 eV Core-core repulsion = 18064.484263 eV Total energy + Delta-G solvation = -3158.627750 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.20007 -39.34446 -38.37079 -36.60442 -33.64988 -32.87838 -31.42162 -29.88334 -28.12246 -27.93272 -25.46181 -24.37356 -23.79383 -21.94762 -20.98112 -19.39768 -19.04580 -18.95398 -17.59905 -16.91836 -16.85133 -16.47442 -15.84951 -15.41114 -15.06386 -14.88880 -14.82208 -14.41776 -14.29778 -13.99610 -13.83940 -13.55140 -13.27540 -13.07068 -12.93860 -12.87652 -12.71764 -12.63501 -12.42747 -12.18085 -12.08146 -11.90120 -11.58420 -11.45136 -11.23798 -10.65937 -9.97878 -9.56354 -9.43672 -8.80351 -7.84766 -5.33992 -0.50223 0.49045 0.95797 1.36802 1.46765 1.49454 1.58954 1.80112 2.11596 2.50914 3.26308 3.45737 3.47915 3.84019 3.89432 4.01817 4.09170 4.21827 4.29595 4.36829 4.42004 4.54669 4.69123 4.70935 4.76997 4.83892 4.94282 5.00417 5.11087 5.15112 5.16805 5.25147 5.26981 5.37154 5.45143 5.64547 5.69710 6.30664 6.36517 6.93299 7.12617 7.81955 8.26435 9.18237 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.035230 B = 0.003386 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.595173 B = 8266.442079 C = 8640.404417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.202 4.202 3 C -0.168 4.168 4 C -0.053 4.053 5 C -0.305 4.305 6 C 0.595 3.405 7 O -0.584 6.584 8 N -0.610 5.610 9 C 0.096 3.904 10 C -0.134 4.134 11 C 0.168 3.832 12 H 0.077 0.923 13 N -0.599 5.599 14 C 0.175 3.825 15 C -0.269 4.269 16 H 0.070 0.930 17 C -0.045 4.045 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.269 1.269 21 H -0.293 1.293 22 H -0.290 1.290 23 C 0.098 3.902 24 S 0.249 5.751 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.092 0.908 28 H 0.165 0.835 29 H 0.145 0.855 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.071 0.929 34 H 0.015 0.985 35 H 0.013 0.987 36 H 0.029 0.971 37 H 0.249 0.751 38 H 0.062 0.938 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.359 13.918 -0.051 23.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.322 4.322 3 C -0.197 4.197 4 C -0.087 4.087 5 C -0.425 4.425 6 C 0.386 3.614 7 O -0.467 6.467 8 N -0.342 5.342 9 C -0.027 4.027 10 C -0.174 4.174 11 C 0.058 3.942 12 H 0.095 0.905 13 N -0.320 5.320 14 C 0.030 3.970 15 C -0.399 4.399 16 H 0.088 0.912 17 C -0.241 4.241 18 N -0.577 5.577 19 Si 0.795 3.205 20 H -0.193 1.193 21 H -0.220 1.220 22 H -0.216 1.216 23 C -0.027 4.027 24 S 0.518 5.482 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.111 0.889 28 H 0.183 0.817 29 H 0.163 0.837 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.048 0.952 37 H 0.059 0.941 38 H 0.080 0.920 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.139 12.655 0.009 22.945 hybrid contribution 1.610 0.952 -0.268 1.890 sum -17.529 13.607 -0.259 22.192 Atomic orbital electron populations 1.20549 0.85089 1.04704 1.04217 1.25095 1.03455 0.98658 1.04996 1.20098 0.91412 1.01009 1.07178 1.20911 0.97427 0.94593 0.95809 1.24359 0.96445 0.99243 1.22417 1.17060 0.87874 0.80471 0.75967 1.90775 1.43883 1.58156 1.53838 1.48332 1.09325 1.04641 1.71902 1.22269 0.89918 0.87204 1.03326 1.23043 0.96752 0.94879 1.02765 1.21521 0.88525 0.86705 0.97408 0.90479 1.43941 1.41548 1.43998 1.02561 1.20544 0.97983 0.95541 0.82938 1.19544 1.25811 0.99536 0.95026 0.91184 1.25716 1.02546 0.96594 0.99222 1.70214 1.44095 1.16398 1.26980 0.85221 0.78851 0.77975 0.78459 1.19327 1.21984 1.21640 1.22699 0.84471 0.94396 1.01118 1.83209 0.91749 1.06051 1.67198 0.89107 0.90042 0.88915 0.81741 0.83719 0.89041 0.89203 0.89030 0.91072 0.96666 0.96856 0.95239 0.94139 0.91956 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.72 10.31 71.24 0.73 0.01 16 2 C -0.20 -3.11 6.28 24.68 0.15 -2.95 16 3 C -0.17 -2.89 10.00 21.08 0.21 -2.67 16 4 C -0.05 -1.25 10.01 21.72 0.22 -1.03 16 5 C -0.30 -8.19 6.38 24.08 0.15 -8.03 16 6 C 0.60 20.66 7.82 86.42 0.68 21.33 16 7 O -0.58 -24.67 17.10 -4.36 -0.07 -24.74 16 8 N -0.61 -20.05 3.33 -816.51 -2.72 -22.77 16 9 C 0.10 2.50 5.17 86.73 0.45 2.95 16 10 C -0.13 -4.24 6.53 31.78 0.21 -4.03 16 11 C 0.17 6.57 3.54 46.38 0.16 6.73 16 12 H 0.08 3.05 7.95 -2.39 -0.02 3.03 16 13 N -0.60 -29.13 2.96 -695.04 -2.05 -31.19 16 14 C 0.17 8.41 7.75 127.77 0.99 9.40 16 15 C -0.27 -14.48 9.60 84.03 0.81 -13.67 16 16 H 0.07 3.69 7.86 -2.91 -0.02 3.66 16 17 C -0.04 -2.46 5.07 84.86 0.43 -2.03 16 18 N -0.93 -53.60 10.82 21.65 0.23 -53.37 16 19 Si 0.97 44.49 29.58 68.60 2.03 46.52 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 C 0.10 3.70 6.45 86.84 0.56 4.26 16 24 S 0.25 4.60 18.38 -56.49 -1.04 3.57 16 25 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.17 1.94 8.06 -2.91 -0.02 1.91 16 29 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 30 H 0.09 2.00 6.81 -2.39 -0.02 1.99 16 31 H 0.09 1.99 6.99 -2.38 -0.02 1.97 16 32 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.07 2.39 7.21 -2.38 -0.02 2.38 16 34 H 0.02 0.78 7.34 -2.39 -0.02 0.77 16 35 H 0.01 0.68 7.40 -2.39 -0.02 0.66 16 36 H 0.03 1.23 6.15 -2.39 -0.01 1.22 16 37 H 0.25 13.95 8.31 -92.71 -0.77 13.17 16 38 H 0.06 2.46 6.14 -2.39 -0.01 2.45 16 39 H 0.06 2.39 8.04 -2.39 -0.02 2.37 16 Total: -1.00 -68.15 327.26 3.18 -64.97 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.05 Total: 6.75 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: 5.75 Total: 10.26 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -4.54 Total: -107.32 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.07 Total: -24.74 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.04 Total: 3.57 kcal Total: -68.15 3.18 -64.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970989627.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.940 kcal (2) G-P(sol) polarization free energy of solvation -68.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds