Wall clock time and date at job start Fri Apr 10 2020 20:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 S 1.70445 * 124.58888 * 2 1 4 4 C 1.75509 * 92.44073 * 180.02562 * 3 2 1 5 5 C 1.32767 * 110.57621 * 359.74050 * 4 3 2 6 6 C 1.36009 * 124.58983 * 180.02562 * 2 1 3 7 7 C 1.47188 * 123.45976 * 359.97306 * 6 2 1 8 8 O 1.21639 * 120.00114 * 33.96780 * 7 6 2 9 9 N 1.34778 * 119.99969 * 213.95893 * 7 6 2 10 10 C 1.47422 * 125.64719 * 5.75650 * 9 7 6 11 11 C 1.54912 * 104.83019 * 155.90024 * 10 9 7 12 12 C 1.55150 * 101.58170 * 37.01249 * 11 10 9 13 13 H 1.09005 * 110.72336 * 83.03312 * 12 11 10 14 14 N 1.46498 * 110.72204 * 206.13404 * 12 11 10 15 15 C 1.46502 * 120.00130 * 57.55269 * 14 12 11 16 16 C 1.36939 * 120.00275 * 237.55965 * 14 12 11 17 17 H 1.08004 * 119.99288 * 349.18648 * 16 14 12 18 18 C 1.38812 * 120.00270 * 169.18024 * 16 14 12 19 19 N 1.31618 * 120.00088 * 320.75976 * 18 16 14 20 20 Si 1.86797 * 119.99660 * 140.75539 * 18 16 14 21 21 H 1.48501 * 109.47029 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.47043 * 299.99867 * 20 18 16 23 23 H 1.48497 * 109.47403 * 60.00065 * 20 18 16 24 24 C 1.47316 * 125.61501 * 185.97047 * 9 7 6 25 25 H 1.09006 * 109.47239 * 270.00092 * 1 2 3 26 26 H 1.09003 * 109.47327 * 29.99672 * 1 2 3 27 27 H 1.09001 * 109.47525 * 150.00235 * 1 2 3 28 28 H 1.08004 * 124.70891 * 180.02562 * 4 3 2 29 29 H 1.07996 * 123.46053 * 180.23261 * 5 4 3 30 30 H 1.09007 * 110.36515 * 37.06676 * 10 9 7 31 31 H 1.08999 * 110.46053 * 274.78667 * 10 9 7 32 32 H 1.08992 * 111.00688 * 278.93319 * 11 10 9 33 33 H 1.09006 * 111.03364 * 155.09865 * 11 10 9 34 34 H 1.09002 * 109.47490 * 271.51626 * 15 14 12 35 35 H 1.09004 * 109.46657 * 31.51144 * 15 14 12 36 36 H 1.08996 * 109.46952 * 151.51541 * 15 14 12 37 37 H 0.97002 * 119.99523 * 357.08699 * 19 18 16 38 38 H 1.09004 * 110.06230 * 61.69305 * 24 9 7 39 39 H 1.08994 * 109.85165 * 300.42685 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9606 0.4693 -0.0008 5 6 3.6943 -0.8314 0.0046 6 6 2.2792 -1.1197 -0.0005 7 6 1.7290 -2.4849 -0.0005 8 8 0.6911 -2.7223 -0.5887 9 7 2.3753 -3.4719 0.6510 10 6 3.5695 -3.3034 1.4988 11 6 3.5447 -4.5149 2.4639 12 6 3.0106 -5.6397 1.5383 13 1 3.8197 -6.0704 0.9483 14 7 2.3332 -6.6767 2.3205 15 6 1.1994 -6.3237 3.1786 16 6 2.7597 -7.9760 2.2499 17 1 3.4737 -8.2696 1.4945 18 6 2.2746 -8.9158 3.1490 19 7 2.0897 -8.5861 4.4097 20 14 1.8841 -10.6481 2.5695 21 1 1.3840 -11.4518 3.7137 22 1 0.8435 -10.5933 1.5114 23 1 3.1136 -11.2762 2.0227 24 6 2.0073 -4.8982 0.6299 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 4.9538 0.8938 -0.0006 29 1 4.4575 -1.5955 0.0089 30 1 3.5083 -2.3706 2.0594 31 1 4.4740 -3.3212 0.8908 32 1 2.8638 -4.3375 3.2963 33 1 4.5466 -4.7485 2.8245 34 1 1.5649 -6.0412 4.1658 35 1 0.6576 -5.4864 2.7385 36 1 0.5321 -7.1807 3.2697 37 1 2.3321 -7.6995 4.7197 38 1 2.0712 -5.2859 -0.3868 39 1 0.9953 -5.0251 1.0143 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971502450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:31 Heat of formation + Delta-G solvation = 9.583114 kcal Electronic energy + Delta-G solvation = -21581.701373 eV Core-core repulsion = 18423.143354 eV Total energy + Delta-G solvation = -3158.558019 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.38224 -39.31397 -37.83954 -36.86378 -33.58911 -32.90919 -31.38045 -29.81868 -28.34974 -27.88579 -25.46505 -24.14031 -23.92127 -21.75906 -20.99824 -19.90219 -19.58630 -18.23882 -17.65722 -17.26538 -16.81344 -16.14032 -15.82705 -15.45583 -15.36376 -14.89899 -14.82005 -14.68112 -14.26015 -13.95138 -13.79071 -13.57719 -13.49929 -13.15662 -13.01081 -12.65083 -12.63192 -12.56155 -12.45502 -12.37632 -11.96319 -11.89364 -11.82007 -11.53827 -10.96858 -10.34006 -9.84707 -9.68747 -9.35241 -9.08811 -8.42407 -5.23786 -0.19525 0.54586 0.92990 1.04109 1.58594 1.66298 1.85220 1.91549 2.12428 2.63758 3.08684 3.40643 3.53989 3.71440 3.72265 3.94792 4.11813 4.16112 4.22166 4.30865 4.37779 4.47799 4.55741 4.58638 4.64612 4.74353 4.83707 4.88078 4.92051 5.03762 5.04772 5.14863 5.16751 5.22675 5.28089 5.31321 5.81196 6.33280 6.44683 6.95023 7.02828 7.76596 8.14556 8.92490 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.035596 B = 0.003414 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.407613 B = 8198.368199 C = 8469.710748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.170 4.170 3 S 0.228 5.772 4 C -0.225 4.225 5 C -0.117 4.117 6 C -0.189 4.189 7 C 0.586 3.414 8 O -0.583 6.583 9 N -0.607 5.607 10 C 0.112 3.888 11 C -0.145 4.145 12 C 0.170 3.830 13 H 0.083 0.917 14 N -0.604 5.604 15 C 0.147 3.853 16 C -0.381 4.381 17 H 0.064 0.936 18 C -0.062 4.062 19 N -0.924 5.924 20 Si 1.099 2.901 21 H -0.293 1.293 22 H -0.288 1.288 23 H -0.273 1.273 24 C 0.100 3.900 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.202 0.798 29 H 0.163 0.837 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.091 0.909 34 H 0.000 1.000 35 H 0.037 0.963 36 H 0.028 0.972 37 H 0.258 0.742 38 H 0.058 0.942 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.268 22.449 -7.800 24.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.290 4.290 3 S 0.494 5.506 4 C -0.360 4.360 5 C -0.145 4.145 6 C -0.206 4.206 7 C 0.375 3.625 8 O -0.466 6.466 9 N -0.339 5.339 10 C -0.010 4.010 11 C -0.185 4.185 12 C 0.062 3.938 13 H 0.101 0.899 14 N -0.327 5.327 15 C 0.001 3.999 16 C -0.510 4.510 17 H 0.082 0.918 18 C -0.261 4.261 19 N -0.564 5.564 20 Si 0.925 3.075 21 H -0.220 1.220 22 H -0.215 1.215 23 H -0.199 1.199 24 C -0.025 4.025 25 H 0.099 0.901 26 H 0.112 0.888 27 H 0.091 0.909 28 H 0.219 0.781 29 H 0.180 0.820 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.075 0.925 33 H 0.110 0.890 34 H 0.018 0.982 35 H 0.055 0.945 36 H 0.047 0.953 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.833 22.414 -7.650 23.992 hybrid contribution 0.591 -0.594 -0.239 0.872 sum 4.424 21.820 -7.889 23.621 Atomic orbital electron populations 1.20602 0.87277 1.04490 1.03533 1.24717 1.02267 0.98278 1.03720 1.82786 0.94028 1.04939 1.68890 1.25824 1.03685 0.96462 1.10019 1.21393 0.93265 0.97639 1.02243 1.20066 0.94705 0.91841 1.14032 1.17847 0.82641 0.84256 0.77715 1.90708 1.24981 1.83791 1.47076 1.48464 1.30503 1.06875 1.48105 1.22555 0.87470 0.99032 0.91924 1.23264 1.02407 0.94879 0.97943 1.21408 0.92585 0.88136 0.91710 0.89934 1.44079 1.33202 1.04791 1.50582 1.20739 0.89421 0.97420 0.92276 1.20129 1.29384 0.85785 1.15662 0.91829 1.26787 0.99774 1.07113 0.92434 1.70958 1.49930 1.21639 1.13881 0.83059 0.77230 0.72290 0.74941 1.21970 1.21459 1.19864 1.22430 0.99695 0.80250 1.00124 0.90147 0.88762 0.90930 0.78108 0.81996 0.88998 0.88483 0.92490 0.89025 0.98189 0.94454 0.95341 0.93214 0.92358 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.24 9.99 71.24 0.71 -1.53 16 2 C -0.17 -3.83 6.33 25.17 0.16 -3.67 16 3 S 0.23 3.27 22.97 -56.49 -1.30 1.97 16 4 C -0.23 -3.02 11.12 66.64 0.74 -2.28 16 5 C -0.12 -2.17 8.67 22.67 0.20 -1.97 16 6 C -0.19 -4.89 5.47 -19.87 -0.11 -5.00 16 7 C 0.59 19.76 7.48 86.59 0.65 20.41 16 8 O -0.58 -23.95 15.08 -4.15 -0.06 -24.01 16 9 N -0.61 -19.49 3.33 -815.16 -2.72 -22.21 16 10 C 0.11 2.77 5.29 86.86 0.46 3.23 16 11 C -0.14 -4.57 6.65 31.98 0.21 -4.36 16 12 C 0.17 6.64 3.43 46.18 0.16 6.80 16 13 H 0.08 3.18 7.87 -2.38 -0.02 3.16 16 14 N -0.60 -29.69 2.91 -696.14 -2.03 -31.72 16 15 C 0.15 7.16 7.78 127.77 0.99 8.15 16 16 C -0.38 -20.93 9.46 84.03 0.80 -20.13 16 17 H 0.06 3.46 7.94 -2.91 -0.02 3.44 16 18 C -0.06 -3.50 4.41 84.86 0.37 -3.13 16 19 N -0.92 -55.35 12.56 21.65 0.27 -55.08 16 20 Si 1.10 50.76 30.05 68.60 2.06 52.82 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 C 0.10 3.79 6.46 86.67 0.56 4.35 16 25 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 26 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 2.10 5.89 -2.39 -0.01 2.09 16 28 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 29 H 0.16 2.50 6.16 -2.91 -0.02 2.48 16 30 H 0.09 1.97 7.25 -2.38 -0.02 1.95 16 31 H 0.10 1.86 7.06 -2.39 -0.02 1.84 16 32 H 0.06 2.00 7.16 -2.39 -0.02 1.98 16 33 H 0.09 2.67 8.14 -2.38 -0.02 2.66 16 34 H 0.00 0.01 6.99 -2.39 -0.02 -0.01 16 35 H 0.04 1.65 6.24 -2.38 -0.01 1.64 16 36 H 0.03 1.52 6.79 -2.39 -0.02 1.50 16 37 H 0.26 15.63 6.58 -92.71 -0.61 15.02 16 38 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 2.03 6.10 -2.39 -0.01 2.01 16 Total: -1.00 -70.49 323.44 3.35 -67.14 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 1.22 Total: 10.21 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 5.90 Total: 0.87 kcal Atomic # 7 Polarization: -104.53 SS G_CDS: -4.47 Total: -109.00 kcal Atomic # 8 Polarization: -23.95 SS G_CDS: -0.06 Total: -24.01 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 2.06 Total: 52.82 kcal Atomic # 16 Polarization: 3.27 SS G_CDS: -1.30 Total: 1.97 kcal Total: -70.49 3.35 -67.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971502450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.723 kcal (2) G-P(sol) polarization free energy of solvation -70.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds