Wall clock time and date at job start Fri Apr 10 2020 20:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32768 * 124.70954 * 2 1 4 4 C 1.44432 * 113.07956 * 180.17874 * 3 2 1 5 5 C 1.47195 * 123.45796 * 179.80633 * 4 3 2 6 6 O 1.21636 * 119.99885 * 187.17240 * 5 4 3 7 7 N 1.34771 * 119.99932 * 7.17450 * 5 4 3 8 8 C 1.47423 * 125.64903 * 7.11331 * 7 5 4 9 9 C 1.54918 * 104.83196 * 155.82237 * 8 7 5 10 10 C 1.55157 * 101.57899 * 37.01087 * 9 8 7 11 11 H 1.08993 * 110.72356 * 83.04076 * 10 9 8 12 12 N 1.46500 * 110.71558 * 206.13454 * 10 9 8 13 13 C 1.46506 * 120.00028 * 59.99985 * 12 10 9 14 14 C 1.36935 * 120.00200 * 239.99782 * 12 10 9 15 15 H 1.08005 * 119.99705 * 355.81001 * 14 12 10 16 16 C 1.38812 * 120.00391 * 175.53787 * 14 12 10 17 17 N 1.31623 * 119.99322 * 329.82571 * 16 14 12 18 18 Si 1.86800 * 120.00293 * 149.82850 * 16 14 12 19 19 H 1.48503 * 109.46964 * 94.99033 * 18 16 14 20 20 H 1.48489 * 109.47236 * 214.99441 * 18 16 14 21 21 H 1.48504 * 109.46993 * 334.99696 * 18 16 14 22 22 C 1.47023 * 125.64737 * 187.05215 * 7 5 4 23 23 C 1.36000 * 113.07980 * 359.54849 * 4 3 2 24 24 S 1.70449 * 110.81740 * 0.23520 * 23 4 3 25 25 H 1.09004 * 109.47045 * 180.27467 * 1 2 3 26 26 H 1.09000 * 109.47461 * 300.26895 * 1 2 3 27 27 H 1.08998 * 109.47303 * 60.27255 * 1 2 3 28 28 H 1.07997 * 123.46163 * 359.97438 * 3 2 1 29 29 H 1.08991 * 110.37055 * 36.98397 * 8 7 5 30 30 H 1.08999 * 110.45860 * 274.70400 * 8 7 5 31 31 H 1.08990 * 111.00230 * 278.93361 * 9 8 7 32 32 H 1.09003 * 111.03090 * 155.09323 * 9 8 7 33 33 H 1.08997 * 109.46548 * 262.61841 * 13 12 10 34 34 H 1.08994 * 109.47187 * 22.62205 * 13 12 10 35 35 H 1.08998 * 109.46907 * 142.62617 * 13 12 10 36 36 H 0.97003 * 119.99384 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.88048 * 61.69174 * 22 7 5 38 38 H 1.08999 * 109.88316 * 300.52715 * 22 7 5 39 39 H 1.08003 * 124.59375 * 180.21342 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6776 0.8003 -0.0041 5 6 4.7200 1.8395 -0.0091 6 8 5.8882 1.5285 -0.1440 7 7 4.3801 3.1356 0.1358 8 6 3.0318 3.6398 0.4537 9 6 3.2701 5.0240 1.1074 10 6 4.4699 5.5566 0.2804 11 1 4.1269 6.0068 -0.6510 12 7 5.2516 6.5184 1.0616 13 6 5.8720 6.1055 2.3229 14 6 5.4023 7.8033 0.6129 15 1 5.0028 8.0898 -0.3488 16 6 6.0636 8.7391 1.3964 17 7 6.0263 8.6429 2.7086 18 14 7.0063 10.1349 0.5886 19 1 6.1388 11.3376 0.5097 20 1 8.2141 10.4476 1.3938 21 1 7.4152 9.7290 -0.7802 22 6 5.2929 4.2806 0.0041 23 6 3.9476 -0.5327 0.0027 24 16 2.5064 -1.4426 0.0075 25 1 -0.3633 -1.0277 0.0049 26 1 -0.3634 0.5180 0.8875 27 1 -0.3634 0.5096 -0.8924 28 1 1.8614 2.0940 -0.0004 29 1 2.5318 2.9707 1.1539 30 1 2.4407 3.7466 -0.4558 31 1 3.5363 4.9187 2.1590 32 1 2.3981 5.6675 0.9897 33 1 5.2328 6.3995 3.1555 34 1 6.0000 5.0231 2.3277 35 1 6.8447 6.5869 2.4241 36 1 6.4887 9.2966 3.2561 37 1 5.7017 4.3146 -1.0057 38 1 6.1009 4.1960 0.7308 39 1 4.9408 -0.9571 0.0044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972546891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:37 Heat of formation + Delta-G solvation = 40.667228 kcal Electronic energy + Delta-G solvation = -21378.991415 eV Core-core repulsion = 18221.781305 eV Total energy + Delta-G solvation = -3157.210110 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10065 -37.76616 -36.95896 -34.85452 -32.23748 -31.63322 -29.83368 -28.36600 -26.83852 -26.11565 -24.95666 -22.94487 -22.49880 -19.96946 -19.25065 -19.09000 -17.71841 -17.07806 -15.97503 -15.87767 -15.55125 -14.78468 -14.43399 -14.18488 -13.86111 -13.55861 -13.42215 -13.25944 -12.83231 -12.56394 -12.50044 -12.40209 -12.14435 -12.07508 -11.71588 -11.43648 -11.10553 -10.94472 -10.64675 -10.62329 -10.47253 -10.31360 -9.94455 -9.82465 -9.73161 -8.97260 -8.63253 -8.42695 -8.28310 -7.01016 -5.86365 -3.08528 0.67802 1.33434 1.70776 1.89004 3.26430 3.38466 3.44406 3.47849 3.51693 4.42727 4.48441 4.76131 4.91084 4.99719 5.04408 5.20855 5.24308 5.27227 5.30139 5.46197 5.52821 5.61381 5.67682 5.78420 5.88264 5.89494 5.95566 6.14248 6.27462 6.35738 6.52706 6.63105 6.74986 6.82769 7.35632 7.59476 7.75604 7.79827 8.23582 8.35545 9.13514 9.81474 10.25866 11.22044 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.035447 B = 0.003302 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.719816 B = 8478.719902 C = 8859.106316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.201 4.201 3 C -0.132 4.132 4 C -0.147 4.147 5 C 0.587 3.413 6 O -0.546 6.546 7 N -0.604 5.604 8 C 0.092 3.908 9 C -0.155 4.155 10 C 0.175 3.825 11 H 0.080 0.920 12 N -0.588 5.588 13 C 0.155 3.845 14 C -0.266 4.266 15 H 0.077 0.923 16 C 0.007 3.993 17 N -0.891 5.891 18 Si 0.888 3.112 19 H -0.290 1.290 20 H -0.289 1.289 21 H -0.279 1.279 22 C 0.087 3.913 23 C -0.186 4.186 24 S 0.170 5.830 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.167 0.833 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.025 0.975 34 H 0.006 0.994 35 H 0.050 0.950 36 H 0.253 0.747 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.254 -18.233 -4.496 22.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.318 4.318 3 C -0.160 4.160 4 C -0.164 4.164 5 C 0.374 3.626 6 O -0.425 6.425 7 N -0.337 5.337 8 C -0.031 4.031 9 C -0.196 4.196 10 C 0.065 3.935 11 H 0.098 0.902 12 N -0.309 5.309 13 C 0.011 3.989 14 C -0.394 4.394 15 H 0.095 0.905 16 C -0.192 4.192 17 N -0.535 5.535 18 Si 0.717 3.283 19 H -0.217 1.217 20 H -0.215 1.215 21 H -0.205 1.205 22 C -0.037 4.037 23 C -0.324 4.324 24 S 0.436 5.564 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.184 0.816 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.043 0.957 34 H 0.025 0.975 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -11.813 -19.862 -4.412 23.526 hybrid contribution 0.969 2.340 -0.273 2.548 sum -10.843 -17.521 -4.685 21.131 Atomic orbital electron populations 1.20335 0.87479 1.02880 1.03278 1.24410 1.00411 0.96007 1.10927 1.21959 0.91225 1.00666 1.02195 1.20240 0.93480 0.93184 1.09500 1.17255 0.87419 0.80833 0.77053 1.90781 1.19175 1.81373 1.51200 1.48260 1.11512 1.05041 1.68877 1.22755 0.84514 0.96563 0.99288 1.23477 1.01127 0.93740 1.01211 1.21232 0.89356 0.88166 0.94793 0.90175 1.44000 1.57537 1.07250 1.22096 1.20876 0.98117 0.92942 0.86957 1.19197 1.33089 0.86199 1.00961 0.90504 1.24677 1.01779 0.97878 0.94875 1.70286 1.43318 1.36895 1.03018 0.86502 0.80528 0.81984 0.79309 1.21677 1.21534 1.20467 1.22800 0.94018 0.85277 1.01616 1.25486 1.04503 0.97078 1.05315 1.82941 0.93977 1.08933 1.70558 0.91471 0.90370 0.90429 0.81596 0.90402 0.91347 0.90556 0.90242 0.95664 0.97506 0.93084 0.93655 0.91897 0.90612 0.80866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.35 36.00 0.37 -0.13 16 2 C -0.20 -1.86 6.44 -36.18 -0.23 -2.10 16 3 C -0.13 -1.46 8.52 -39.02 -0.33 -1.80 16 4 C -0.15 -2.03 5.93 -104.63 -0.62 -2.65 16 5 C 0.59 10.17 7.80 -12.63 -0.10 10.07 16 6 O -0.55 -11.32 17.08 5.25 0.09 -11.23 16 7 N -0.60 -9.98 3.33 -171.87 -0.57 -10.55 16 8 C 0.09 1.22 4.97 -2.52 -0.01 1.21 16 9 C -0.15 -2.50 6.66 -24.58 -0.16 -2.66 16 10 C 0.18 3.39 3.44 -66.09 -0.23 3.16 16 11 H 0.08 1.50 7.85 -51.93 -0.41 1.10 16 12 N -0.59 -14.22 2.94 -171.39 -0.50 -14.72 16 13 C 0.16 3.78 7.81 59.85 0.47 4.25 16 14 C -0.27 -7.12 9.68 -15.06 -0.15 -7.26 16 15 H 0.08 1.99 7.85 -52.48 -0.41 1.57 16 16 C 0.01 0.18 4.83 -17.43 -0.08 0.10 16 17 N -0.89 -25.53 10.83 55.49 0.60 -24.93 16 18 Si 0.89 21.42 29.65 -169.99 -5.04 16.38 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.09 1.63 6.39 -3.06 -0.02 1.61 16 23 C -0.19 -2.25 10.53 29.93 0.32 -1.93 16 24 S 0.17 1.53 23.00 -107.50 -2.47 -0.94 16 25 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.17 1.62 4.22 -52.49 -0.22 1.40 16 29 H 0.08 0.91 5.98 -51.93 -0.31 0.60 16 30 H 0.07 0.77 7.47 -51.93 -0.39 0.38 16 31 H 0.08 1.36 7.34 -51.93 -0.38 0.98 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.03 0.65 7.72 -51.93 -0.40 0.25 16 34 H 0.01 0.14 6.21 -51.93 -0.32 -0.18 16 35 H 0.05 1.36 6.72 -51.93 -0.35 1.01 16 36 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.08 1.59 6.04 -51.93 -0.31 1.28 16 39 H 0.17 2.04 8.03 -52.48 -0.42 1.62 16 LS Contribution 325.92 15.07 4.91 4.91 Total: -1.00 -31.62 325.92 -8.94 -40.56 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -5.18 Total: -1.34 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.78 Total: 1.86 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: -0.48 Total: -50.21 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.04 Total: 16.38 kcal Atomic # 16 Polarization: 1.53 SS G_CDS: -2.47 Total: -0.94 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.62 -8.94 -40.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972546891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.228 kcal (2) G-P(sol) polarization free energy of solvation -31.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds