Wall clock time and date at job start Fri Apr 10 2020 20:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32768 * 124.70954 * 2 1 4 4 C 1.44432 * 113.07956 * 180.17874 * 3 2 1 5 5 C 1.47195 * 123.45796 * 179.80633 * 4 3 2 6 6 O 1.21636 * 119.99885 * 187.17240 * 5 4 3 7 7 N 1.34771 * 119.99932 * 7.17450 * 5 4 3 8 8 C 1.47423 * 125.64903 * 7.11331 * 7 5 4 9 9 C 1.54918 * 104.83196 * 155.82237 * 8 7 5 10 10 C 1.55157 * 101.57899 * 37.01087 * 9 8 7 11 11 H 1.08993 * 110.72356 * 83.04076 * 10 9 8 12 12 N 1.46500 * 110.71558 * 206.13454 * 10 9 8 13 13 C 1.46506 * 120.00028 * 59.99985 * 12 10 9 14 14 C 1.36935 * 120.00200 * 239.99782 * 12 10 9 15 15 H 1.08005 * 119.99705 * 355.81001 * 14 12 10 16 16 C 1.38812 * 120.00391 * 175.53787 * 14 12 10 17 17 N 1.31623 * 119.99322 * 329.82571 * 16 14 12 18 18 Si 1.86800 * 120.00293 * 149.82850 * 16 14 12 19 19 H 1.48503 * 109.46964 * 94.99033 * 18 16 14 20 20 H 1.48489 * 109.47236 * 214.99441 * 18 16 14 21 21 H 1.48504 * 109.46993 * 334.99696 * 18 16 14 22 22 C 1.47023 * 125.64737 * 187.05215 * 7 5 4 23 23 C 1.36000 * 113.07980 * 359.54849 * 4 3 2 24 24 S 1.70449 * 110.81740 * 0.23520 * 23 4 3 25 25 H 1.09004 * 109.47045 * 180.27467 * 1 2 3 26 26 H 1.09000 * 109.47461 * 300.26895 * 1 2 3 27 27 H 1.08998 * 109.47303 * 60.27255 * 1 2 3 28 28 H 1.07997 * 123.46163 * 359.97438 * 3 2 1 29 29 H 1.08991 * 110.37055 * 36.98397 * 8 7 5 30 30 H 1.08999 * 110.45860 * 274.70400 * 8 7 5 31 31 H 1.08990 * 111.00230 * 278.93361 * 9 8 7 32 32 H 1.09003 * 111.03090 * 155.09323 * 9 8 7 33 33 H 1.08997 * 109.46548 * 262.61841 * 13 12 10 34 34 H 1.08994 * 109.47187 * 22.62205 * 13 12 10 35 35 H 1.08998 * 109.46907 * 142.62617 * 13 12 10 36 36 H 0.97003 * 119.99384 * 179.97438 * 17 16 14 37 37 H 1.09003 * 109.88048 * 61.69174 * 22 7 5 38 38 H 1.08999 * 109.88316 * 300.52715 * 22 7 5 39 39 H 1.08003 * 124.59375 * 180.21342 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2630 1.0914 0.0000 4 6 3.6776 0.8003 -0.0041 5 6 4.7200 1.8395 -0.0091 6 8 5.8882 1.5285 -0.1440 7 7 4.3801 3.1356 0.1358 8 6 3.0318 3.6398 0.4537 9 6 3.2701 5.0240 1.1074 10 6 4.4699 5.5566 0.2804 11 1 4.1269 6.0068 -0.6510 12 7 5.2516 6.5184 1.0616 13 6 5.8720 6.1055 2.3229 14 6 5.4023 7.8033 0.6129 15 1 5.0028 8.0898 -0.3488 16 6 6.0636 8.7391 1.3964 17 7 6.0263 8.6429 2.7086 18 14 7.0063 10.1349 0.5886 19 1 6.1388 11.3376 0.5097 20 1 8.2141 10.4476 1.3938 21 1 7.4152 9.7290 -0.7802 22 6 5.2929 4.2806 0.0041 23 6 3.9476 -0.5327 0.0027 24 16 2.5064 -1.4426 0.0075 25 1 -0.3633 -1.0277 0.0049 26 1 -0.3634 0.5180 0.8875 27 1 -0.3634 0.5096 -0.8924 28 1 1.8614 2.0940 -0.0004 29 1 2.5318 2.9707 1.1539 30 1 2.4407 3.7466 -0.4558 31 1 3.5363 4.9187 2.1590 32 1 2.3981 5.6675 0.9897 33 1 5.2328 6.3995 3.1555 34 1 6.0000 5.0231 2.3277 35 1 6.8447 6.5869 2.4241 36 1 6.4887 9.2966 3.2561 37 1 5.7017 4.3146 -1.0057 38 1 6.1009 4.1960 0.7308 39 1 4.9408 -0.9571 0.0044 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972546891.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:36 Heat of formation + Delta-G solvation = 21.512581 kcal Electronic energy + Delta-G solvation = -21379.822023 eV Core-core repulsion = 18221.781305 eV Total energy + Delta-G solvation = -3158.040718 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37896 -39.13133 -38.03452 -36.61469 -33.53060 -32.89672 -31.34827 -29.82272 -28.12957 -27.55658 -26.33642 -24.35389 -23.91990 -20.94196 -20.77936 -20.26187 -18.97891 -18.67082 -17.56069 -16.92995 -16.83628 -16.49521 -15.73381 -15.44535 -15.03690 -14.82644 -14.66996 -14.42287 -14.18907 -14.15155 -13.76115 -13.46356 -13.19256 -13.01466 -12.92728 -12.85036 -12.79652 -12.46100 -12.37537 -12.27982 -12.16610 -11.85142 -11.64815 -11.43608 -11.11438 -10.48099 -9.85861 -9.64337 -9.33633 -8.99882 -7.93765 -5.16620 -0.23031 0.56515 0.89595 0.96194 1.45433 1.51093 1.60066 1.98437 2.24948 2.52416 3.18842 3.49599 3.56614 3.77470 3.81840 4.02985 4.22638 4.27960 4.28558 4.38160 4.45226 4.53964 4.61784 4.69128 4.86570 4.88261 4.91021 4.94968 5.04298 5.16721 5.21092 5.24800 5.33855 5.35704 5.43025 5.56306 5.70130 6.21303 6.47177 7.02964 7.08727 7.83345 8.25255 9.14460 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.035447 B = 0.003302 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.719816 B = 8478.719902 C = 8859.106316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.195 4.195 3 C -0.146 4.146 4 C -0.172 4.172 5 C 0.581 3.419 6 O -0.595 6.595 7 N -0.605 5.605 8 C 0.100 3.900 9 C -0.145 4.145 10 C 0.168 3.832 11 H 0.090 0.910 12 N -0.604 5.604 13 C 0.177 3.823 14 C -0.270 4.270 15 H 0.085 0.915 16 C -0.048 4.048 17 N -0.925 5.925 18 Si 0.951 3.049 19 H -0.285 1.285 20 H -0.297 1.297 21 H -0.273 1.273 22 C 0.097 3.903 23 C -0.205 4.205 24 S 0.235 5.765 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.180 0.820 29 H 0.102 0.898 30 H 0.102 0.898 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.004 0.996 34 H 0.023 0.977 35 H 0.020 0.980 36 H 0.249 0.751 37 H 0.058 0.942 38 H 0.046 0.954 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.212 -19.670 -5.688 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.312 4.312 3 C -0.173 4.173 4 C -0.190 4.190 5 C 0.370 3.630 6 O -0.478 6.478 7 N -0.337 5.337 8 C -0.022 4.022 9 C -0.185 4.185 10 C 0.060 3.940 11 H 0.108 0.892 12 N -0.325 5.325 13 C 0.032 3.968 14 C -0.399 4.399 15 H 0.103 0.897 16 C -0.243 4.243 17 N -0.571 5.571 18 Si 0.780 3.220 19 H -0.212 1.212 20 H -0.224 1.224 21 H -0.198 1.198 22 C -0.028 4.028 23 C -0.344 4.344 24 S 0.501 5.499 25 H 0.099 0.901 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.197 0.803 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.075 0.925 32 H 0.115 0.885 33 H 0.022 0.978 34 H 0.041 0.959 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -14.829 -21.323 -5.633 26.576 hybrid contribution 1.819 2.624 0.062 3.194 sum -13.010 -18.699 -5.571 23.451 Atomic orbital electron populations 1.20496 0.84950 1.04246 1.04461 1.24883 1.02056 0.95599 1.08638 1.21938 0.89698 1.01954 1.03702 1.20115 0.93959 0.92563 1.12325 1.17884 0.87693 0.81436 0.75937 1.90740 1.21398 1.82128 1.53534 1.48309 1.12332 1.04436 1.68645 1.22958 0.83227 0.94852 1.01129 1.23321 0.99942 0.95685 0.99560 1.21455 0.90030 0.87391 0.95150 0.89193 1.44160 1.58623 1.07426 1.22277 1.20510 0.96080 0.93364 0.86848 1.19578 1.32316 0.87079 1.00965 0.89738 1.25388 1.02940 1.00648 0.95348 1.70398 1.44503 1.38092 1.04130 0.85507 0.78770 0.79480 0.78272 1.21187 1.22379 1.19825 1.22452 0.93693 0.86245 1.00416 1.25693 1.06144 0.97459 1.05075 1.82750 0.91324 1.07549 1.68243 0.90073 0.89167 0.89146 0.80342 0.87969 0.87985 0.92547 0.88479 0.97772 0.95869 0.96097 0.94196 0.92316 0.93577 0.81645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.35 71.24 0.74 0.09 16 2 C -0.19 -2.87 6.44 24.51 0.16 -2.71 16 3 C -0.15 -2.78 8.52 22.67 0.19 -2.59 16 4 C -0.17 -4.55 5.93 -19.87 -0.12 -4.67 16 5 C 0.58 20.21 7.80 86.60 0.68 20.89 16 6 O -0.59 -25.65 17.08 -4.14 -0.07 -25.72 16 7 N -0.61 -19.62 3.33 -815.91 -2.71 -22.33 16 8 C 0.10 2.38 4.97 86.86 0.43 2.81 16 9 C -0.14 -4.44 6.66 31.99 0.21 -4.22 16 10 C 0.17 6.42 3.44 46.18 0.16 6.57 16 11 H 0.09 3.25 7.85 -2.39 -0.02 3.23 16 12 N -0.60 -29.54 2.94 -696.15 -2.05 -31.59 16 13 C 0.18 8.93 7.81 127.77 1.00 9.93 16 14 C -0.27 -14.50 9.68 84.03 0.81 -13.69 16 15 H 0.08 4.31 7.85 -2.91 -0.02 4.29 16 16 C -0.05 -2.64 4.83 84.86 0.41 -2.23 16 17 N -0.93 -54.43 10.83 21.65 0.23 -54.19 16 18 Si 0.95 44.72 29.65 68.60 2.03 46.76 16 19 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 20 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 C 0.10 3.68 6.39 86.73 0.55 4.23 16 23 C -0.20 -4.76 10.53 67.30 0.71 -4.05 16 24 S 0.23 3.52 23.00 -56.49 -1.30 2.22 16 25 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.18 2.77 4.22 -2.91 -0.01 2.76 16 29 H 0.10 2.03 5.98 -2.39 -0.01 2.02 16 30 H 0.10 1.84 7.47 -2.39 -0.02 1.82 16 31 H 0.06 1.97 7.34 -2.39 -0.02 1.95 16 32 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.00 0.22 7.72 -2.39 -0.02 0.20 16 34 H 0.02 1.06 6.21 -2.39 -0.01 1.04 16 35 H 0.02 1.15 6.72 -2.39 -0.02 1.13 16 36 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 37 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 2.01 6.04 -2.39 -0.01 2.00 16 39 H 0.17 3.97 8.03 -2.91 -0.02 3.94 16 Total: -1.00 -71.05 325.92 3.13 -67.92 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: 1.06 Total: 6.57 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 5.93 Total: 10.36 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -4.53 Total: -108.12 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.07 Total: -25.72 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.76 kcal Atomic # 16 Polarization: 3.52 SS G_CDS: -1.30 Total: 2.22 kcal Total: -71.05 3.13 -67.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972546891.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.436 kcal (2) G-P(sol) polarization free energy of solvation -71.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds