Wall clock time and date at job start Fri Apr 10 2020 20:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99542 * 2 1 4 4 H 1.48502 * 109.46876 * 239.99791 * 3 2 1 5 5 H 1.48493 * 109.47417 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46912 * 120.00373 * 3 2 1 7 7 C 1.38808 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99880 * 194.63576 * 7 2 1 9 9 N 1.36934 * 120.00563 * 14.64170 * 7 2 1 10 10 C 1.43457 * 118.94322 * 204.96683 * 9 7 2 11 11 C 1.53805 * 107.96566 * 273.62602 * 10 9 7 12 12 C 1.47140 * 111.83880 * 281.67208 * 11 10 9 13 13 N 1.48219 * 110.34203 * 58.29414 * 12 11 10 14 14 C 1.34772 * 119.97239 * 102.46448 * 13 12 11 15 15 O 1.21290 * 119.99950 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00367 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47216 * 180.02562 * 16 14 13 18 18 C 1.33391 * 125.20469 * 90.00491 * 17 16 14 19 19 C 1.38419 * 114.92066 * 179.97438 * 18 17 16 20 20 C 1.33390 * 114.92457 * 0.24502 * 19 18 17 21 21 S 1.75883 * 125.20134 * 269.95566 * 17 16 14 22 22 C 1.43620 * 120.05706 * 282.73704 * 13 12 11 23 23 C 1.48861 * 118.93854 * 24.94237 * 9 7 2 24 24 H 0.96993 * 120.00373 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.76793 * 154.00851 * 10 9 7 26 26 H 1.09005 * 109.80890 * 33.26689 * 10 9 7 27 27 H 1.08993 * 109.00812 * 161.06120 * 11 10 9 28 28 H 1.08997 * 108.93936 * 42.23651 * 11 10 9 29 29 H 1.08996 * 109.32486 * 298.02684 * 12 11 10 30 30 H 1.08995 * 109.18222 * 178.46935 * 12 11 10 31 31 H 1.08997 * 109.46978 * 59.99623 * 16 14 13 32 32 H 1.09004 * 109.46892 * 299.99925 * 16 14 13 33 33 H 1.07997 * 122.53823 * 359.97438 * 18 17 16 34 34 H 1.08004 * 122.53834 * 179.97438 * 19 18 17 35 35 H 1.08002 * 125.20353 * 179.75466 * 20 19 18 36 36 H 1.08999 * 108.87176 * 211.19805 * 22 13 12 37 37 H 1.09007 * 108.87097 * 329.63452 * 22 13 12 38 38 H 1.08995 * 109.48258 * 260.60749 * 23 9 7 39 39 H 1.09000 * 109.48113 * 20.63255 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0640 -1.2174 0.2358 9 7 1.3590 -2.3687 -0.3008 10 6 1.8825 -3.6056 0.2032 11 6 2.9394 -4.1139 -0.7918 12 6 2.3235 -4.7454 -1.9694 13 7 1.4279 -3.7866 -2.6590 14 6 1.8372 -3.1756 -3.7883 15 8 2.9383 -3.4101 -4.2398 16 6 0.9270 -2.2011 -4.4903 17 6 1.6171 -1.6634 -5.7173 18 6 1.5527 -2.2042 -6.9350 19 6 2.2704 -1.5331 -7.9099 20 6 2.9220 -0.4503 -7.4830 21 16 2.6299 -0.2262 -5.7630 22 6 0.1265 -3.5037 -2.1214 23 6 0.1303 -2.3124 -1.1393 24 1 -0.4850 0.8399 0.0004 25 1 1.0790 -4.3367 0.2929 26 1 2.3424 -3.4422 1.1779 27 1 3.5770 -4.8424 -0.2910 28 1 3.5508 -3.2729 -1.1189 29 1 1.7465 -5.6141 -1.6525 30 1 3.1077 -5.0643 -2.6560 31 1 0.6879 -1.3778 -3.8172 32 1 0.0082 -2.7089 -4.7838 33 1 0.9836 -3.0978 -7.1443 34 1 2.3041 -1.8638 -8.9375 35 1 3.5334 0.1918 -8.0996 36 1 -0.5523 -3.2753 -2.9431 37 1 -0.2394 -4.3882 -1.5998 38 1 -0.7498 -2.3648 -0.4985 39 1 0.1160 -1.3784 -1.7010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980632507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:42 Heat of formation + Delta-G solvation = 31.495222 kcal Electronic energy + Delta-G solvation = -22328.270921 eV Core-core repulsion = 19170.663083 eV Total energy + Delta-G solvation = -3157.607838 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.80072 -37.68689 -36.78443 -34.21503 -33.07922 -31.60438 -30.81274 -27.74812 -26.93151 -25.32115 -23.68199 -23.28793 -21.71466 -19.76953 -19.17595 -18.45504 -17.09679 -16.94427 -16.20144 -15.85399 -15.21354 -15.03161 -14.47371 -13.95650 -13.76682 -13.48348 -13.02747 -12.86184 -12.63139 -12.52039 -12.28465 -12.18555 -12.08648 -11.72686 -11.42665 -11.25307 -10.99328 -10.75612 -10.56143 -10.46040 -10.25221 -10.17550 -9.85457 -9.72056 -9.37427 -8.49283 -8.42504 -8.21987 -8.03938 -6.71942 -5.81326 -3.22723 1.20262 1.87712 2.26444 2.90436 3.12347 3.37610 3.42965 3.46615 3.60996 4.49480 4.87600 5.05231 5.19306 5.25362 5.36492 5.44462 5.53477 5.58307 5.66749 5.72098 5.80026 5.86720 5.93571 6.08459 6.14282 6.28528 6.29673 6.44300 6.46331 6.53817 6.67560 6.81941 6.92040 7.05085 7.35249 7.46086 7.78758 7.97829 8.42086 8.68603 9.19096 9.86585 10.31570 11.26718 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.006764 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.447016 B = 4138.280976 C = 5421.103931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.004 3.996 3 Si 0.895 3.105 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.251 4.251 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.163 3.837 11 C -0.170 4.170 12 C 0.131 3.869 13 N -0.584 5.584 14 C 0.524 3.476 15 O -0.547 6.547 16 C -0.074 4.074 17 C -0.143 4.143 18 C -0.140 4.140 19 C -0.133 4.133 20 C -0.228 4.228 21 S 0.122 5.878 22 C 0.078 3.922 23 C 0.162 3.838 24 H 0.254 0.746 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.159 0.841 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -5.970 -10.602 12.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.193 4.193 3 Si 0.725 3.275 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.381 4.381 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.034 3.966 11 C -0.212 4.212 12 C 0.009 3.991 13 N -0.316 5.316 14 C 0.311 3.689 15 O -0.425 6.425 16 C -0.116 4.116 17 C -0.261 4.261 18 C -0.171 4.171 19 C -0.164 4.164 20 C -0.364 4.364 21 S 0.386 5.614 22 C -0.048 4.048 23 C 0.037 3.963 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.177 0.823 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.308 -4.889 -9.752 10.914 hybrid contribution 0.002 -0.025 -0.928 0.929 sum 0.310 -4.914 -10.681 11.761 Atomic orbital electron populations 1.69991 1.05045 1.25510 1.54956 1.24932 0.95302 0.98103 1.00999 0.86468 0.79080 0.83618 0.78327 1.20879 1.21550 1.20913 1.19137 0.92093 0.84876 1.41946 0.91869 1.43633 1.29022 1.01990 1.56572 1.20281 0.93664 0.88352 0.94263 1.21884 1.00829 1.00730 0.97718 1.20529 0.93598 0.90383 0.94556 1.47360 1.17127 1.43116 1.24006 1.20216 0.87353 0.80722 0.80629 1.90650 1.21583 1.63691 1.66568 1.20255 0.97970 0.99629 0.93727 1.23905 1.04117 1.00167 0.97880 1.19977 1.03441 1.01732 0.91911 1.20035 0.99637 0.96228 1.00515 1.25596 1.08182 1.04103 0.98474 1.84590 1.46317 1.25273 1.05203 1.22140 0.83209 1.01066 0.98364 1.21857 0.88977 0.94686 0.90817 0.93616 0.94852 0.93643 0.92691 0.91344 0.92162 0.90554 0.87036 0.87549 0.84786 0.84782 0.82316 0.91638 0.91972 0.93905 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.09 10.90 55.49 0.60 -24.49 16 2 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 3 Si 0.90 21.68 29.58 -169.99 -5.03 16.65 16 4 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.25 -6.68 9.27 -15.06 -0.14 -6.82 16 8 H 0.06 1.72 7.87 -52.48 -0.41 1.30 16 9 N -0.59 -13.87 2.54 -172.29 -0.44 -14.31 16 10 C 0.16 3.24 5.63 -5.23 -0.03 3.21 16 11 C -0.17 -3.08 5.64 -29.13 -0.16 -3.24 16 12 C 0.13 2.18 5.70 -5.91 -0.03 2.15 16 13 N -0.58 -10.36 2.47 -176.96 -0.44 -10.80 16 14 C 0.52 9.87 7.66 -10.99 -0.08 9.78 16 15 O -0.55 -11.90 15.47 5.55 0.09 -11.81 16 16 C -0.07 -1.20 4.74 -29.04 -0.14 -1.34 16 17 C -0.14 -2.31 5.00 -36.00 -0.18 -2.49 16 18 C -0.14 -2.01 10.05 -41.21 -0.41 -2.43 16 19 C -0.13 -1.74 10.18 -41.21 -0.42 -2.16 16 20 C -0.23 -3.05 11.23 29.04 0.33 -2.72 16 21 S 0.12 1.98 23.33 -107.50 -2.51 -0.53 16 22 C 0.08 1.29 5.01 -4.84 -0.02 1.27 16 23 C 0.16 3.49 5.17 -2.01 -0.01 3.48 16 24 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.03 0.61 7.58 -51.93 -0.39 0.21 16 26 H 0.05 0.93 8.02 -51.93 -0.42 0.51 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 1.48 7.90 -51.93 -0.41 1.07 16 29 H 0.06 0.85 8.06 -51.93 -0.42 0.43 16 30 H 0.08 1.32 7.12 -51.93 -0.37 0.95 16 31 H 0.11 1.94 7.31 -51.93 -0.38 1.56 16 32 H 0.11 1.37 7.38 -51.93 -0.38 0.99 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.13 1.37 8.06 -52.48 -0.42 0.95 16 35 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.07 0.92 6.38 -51.93 -0.33 0.59 16 37 H 0.06 0.93 7.73 -51.93 -0.40 0.53 16 38 H 0.04 0.99 8.00 -51.93 -0.42 0.57 16 39 H 0.08 1.83 5.72 -51.93 -0.30 1.53 16 LS Contribution 325.54 15.07 4.91 4.91 Total: -1.00 -30.86 325.54 -9.67 -40.53 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -5.46 Total: 1.11 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -1.40 Total: -1.27 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.27 Total: -49.59 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.51 Total: -0.53 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.86 -9.67 -40.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980632507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.022 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds