Wall clock time and date at job start Fri Apr 10 2020 20:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86802 * 119.99542 * 2 1 4 4 H 1.48502 * 109.46876 * 239.99791 * 3 2 1 5 5 H 1.48493 * 109.47417 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46912 * 120.00373 * 3 2 1 7 7 C 1.38808 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99880 * 194.63576 * 7 2 1 9 9 N 1.36934 * 120.00563 * 14.64170 * 7 2 1 10 10 C 1.43457 * 118.94322 * 204.96683 * 9 7 2 11 11 C 1.53805 * 107.96566 * 273.62602 * 10 9 7 12 12 C 1.47140 * 111.83880 * 281.67208 * 11 10 9 13 13 N 1.48219 * 110.34203 * 58.29414 * 12 11 10 14 14 C 1.34772 * 119.97239 * 102.46448 * 13 12 11 15 15 O 1.21290 * 119.99950 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00367 * 179.97438 * 14 13 12 17 17 C 1.50698 * 109.47216 * 180.02562 * 16 14 13 18 18 C 1.33391 * 125.20469 * 90.00491 * 17 16 14 19 19 C 1.38419 * 114.92066 * 179.97438 * 18 17 16 20 20 C 1.33390 * 114.92457 * 0.24502 * 19 18 17 21 21 S 1.75883 * 125.20134 * 269.95566 * 17 16 14 22 22 C 1.43620 * 120.05706 * 282.73704 * 13 12 11 23 23 C 1.48861 * 118.93854 * 24.94237 * 9 7 2 24 24 H 0.96993 * 120.00373 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.76793 * 154.00851 * 10 9 7 26 26 H 1.09005 * 109.80890 * 33.26689 * 10 9 7 27 27 H 1.08993 * 109.00812 * 161.06120 * 11 10 9 28 28 H 1.08997 * 108.93936 * 42.23651 * 11 10 9 29 29 H 1.08996 * 109.32486 * 298.02684 * 12 11 10 30 30 H 1.08995 * 109.18222 * 178.46935 * 12 11 10 31 31 H 1.08997 * 109.46978 * 59.99623 * 16 14 13 32 32 H 1.09004 * 109.46892 * 299.99925 * 16 14 13 33 33 H 1.07997 * 122.53823 * 359.97438 * 18 17 16 34 34 H 1.08004 * 122.53834 * 179.97438 * 19 18 17 35 35 H 1.08002 * 125.20353 * 179.75466 * 20 19 18 36 36 H 1.08999 * 108.87176 * 211.19805 * 22 13 12 37 37 H 1.09007 * 108.87097 * 329.63452 * 22 13 12 38 38 H 1.08995 * 109.48258 * 260.60749 * 23 9 7 39 39 H 1.09000 * 109.48113 * 20.63255 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0640 -1.2174 0.2358 9 7 1.3590 -2.3687 -0.3008 10 6 1.8825 -3.6056 0.2032 11 6 2.9394 -4.1139 -0.7918 12 6 2.3235 -4.7454 -1.9694 13 7 1.4279 -3.7866 -2.6590 14 6 1.8372 -3.1756 -3.7883 15 8 2.9383 -3.4101 -4.2398 16 6 0.9270 -2.2011 -4.4903 17 6 1.6171 -1.6634 -5.7173 18 6 1.5527 -2.2042 -6.9350 19 6 2.2704 -1.5331 -7.9099 20 6 2.9220 -0.4503 -7.4830 21 16 2.6299 -0.2262 -5.7630 22 6 0.1265 -3.5037 -2.1214 23 6 0.1303 -2.3124 -1.1393 24 1 -0.4850 0.8399 0.0004 25 1 1.0790 -4.3367 0.2929 26 1 2.3424 -3.4422 1.1779 27 1 3.5770 -4.8424 -0.2910 28 1 3.5508 -3.2729 -1.1189 29 1 1.7465 -5.6141 -1.6525 30 1 3.1077 -5.0643 -2.6560 31 1 0.6879 -1.3778 -3.8172 32 1 0.0082 -2.7089 -4.7838 33 1 0.9836 -3.0978 -7.1443 34 1 2.3041 -1.8638 -8.9375 35 1 3.5334 0.1918 -8.0996 36 1 -0.5523 -3.2753 -2.9431 37 1 -0.2394 -4.3882 -1.5998 38 1 -0.7498 -2.3648 -0.4985 39 1 0.1160 -1.3784 -1.7010 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980632507.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:41 Heat of formation + Delta-G solvation = 14.132872 kcal Electronic energy + Delta-G solvation = -22329.023809 eV Core-core repulsion = 19170.663083 eV Total energy + Delta-G solvation = -3158.360726 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.23673 -38.95017 -38.23668 -35.91261 -34.58306 -33.07307 -32.48504 -29.33303 -28.24866 -26.90793 -25.44042 -24.50094 -23.11408 -21.47664 -20.32414 -19.79170 -18.81077 -18.21085 -17.79215 -17.36996 -16.62463 -16.33722 -16.12821 -15.61443 -15.47869 -14.99240 -14.48516 -14.21588 -14.01527 -13.82857 -13.62027 -13.47965 -13.42738 -13.14848 -13.10580 -12.83680 -12.54758 -12.47122 -12.35312 -12.08018 -11.70368 -11.69087 -11.58164 -11.43420 -10.85658 -10.48697 -9.56125 -9.52174 -9.42805 -8.63989 -7.86153 -5.28045 0.08800 0.73300 1.15738 1.39672 1.43142 1.48517 1.65142 1.85478 2.28193 2.49547 3.27130 3.63276 3.72568 3.80006 4.15399 4.19638 4.24081 4.25315 4.35173 4.44448 4.53515 4.61542 4.70562 4.76586 4.76721 4.87032 4.95104 5.06756 5.20822 5.25554 5.31210 5.37204 5.49890 5.60990 5.63356 5.73806 5.83703 6.39957 6.55885 7.18846 7.26042 7.96958 8.33490 9.17765 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.013626 B = 0.006764 C = 0.005164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.447016 B = 4138.280976 C = 5421.103931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.037 4.037 3 Si 0.941 3.059 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.049 0.951 9 N -0.605 5.605 10 C 0.159 3.841 11 C -0.155 4.155 12 C 0.128 3.872 13 N -0.586 5.586 14 C 0.516 3.484 15 O -0.581 6.581 16 C -0.067 4.067 17 C -0.166 4.166 18 C -0.132 4.132 19 C -0.135 4.135 20 C -0.212 4.212 21 S 0.040 5.960 22 C 0.088 3.912 23 C 0.168 3.832 24 H 0.250 0.750 25 H 0.061 0.939 26 H 0.034 0.966 27 H 0.085 0.915 28 H 0.022 0.978 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.142 0.858 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.187 0.813 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.025 0.975 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.243 -7.907 -12.220 14.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.233 4.233 3 Si 0.771 3.229 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.387 4.387 8 H 0.066 0.934 9 N -0.328 5.328 10 C 0.032 3.968 11 C -0.196 4.196 12 C 0.006 3.994 13 N -0.316 5.316 14 C 0.305 3.695 15 O -0.462 6.462 16 C -0.108 4.108 17 C -0.283 4.283 18 C -0.162 4.162 19 C -0.165 4.165 20 C -0.347 4.347 21 S 0.303 5.697 22 C -0.037 4.037 23 C 0.042 3.958 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.052 0.948 27 H 0.103 0.897 28 H 0.041 0.959 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.160 0.840 33 H 0.176 0.824 34 H 0.188 0.812 35 H 0.204 0.796 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.043 0.957 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.339 -6.856 -11.357 13.270 hybrid contribution 0.251 0.523 -0.443 0.730 sum -0.088 -6.333 -11.800 13.392 Atomic orbital electron populations 1.70098 1.05651 1.25510 1.56044 1.25409 0.95988 1.00112 1.01754 0.85735 0.78084 0.81214 0.77878 1.21638 1.21346 1.20531 1.19251 0.91721 0.86553 1.41183 0.93366 1.43874 1.29349 1.02181 1.57374 1.20435 0.94725 0.87599 0.94060 1.21694 1.00034 0.99818 0.98075 1.20656 0.94043 0.91151 0.93510 1.47505 1.17589 1.42873 1.23637 1.20724 0.87211 0.80654 0.80911 1.90622 1.23040 1.64886 1.67653 1.20212 0.98830 0.98476 0.93328 1.23956 1.05263 1.00404 0.98701 1.20392 1.02600 1.01908 0.91299 1.20457 0.98564 0.95559 1.01933 1.25901 1.08134 1.04615 0.96099 1.84847 1.48352 1.27334 1.09153 1.22007 0.83371 0.99884 0.98438 1.21697 0.87437 0.95708 0.90912 0.94091 0.92114 0.94803 0.89701 0.95865 0.88240 0.91164 0.89082 0.84004 0.82391 0.81169 0.79559 0.88601 0.89041 0.95696 0.93763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.29 10.90 21.65 0.24 -52.06 16 2 C -0.04 -2.04 4.95 84.86 0.42 -1.62 16 3 Si 0.94 45.83 29.58 68.60 2.03 47.86 16 4 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 7 C -0.26 -14.03 9.27 84.03 0.78 -13.25 16 8 H 0.05 2.73 7.87 -2.91 -0.02 2.70 16 9 N -0.61 -28.60 2.54 -699.01 -1.77 -30.37 16 10 C 0.16 6.15 5.63 87.21 0.49 6.64 16 11 C -0.16 -5.42 5.64 29.04 0.16 -5.25 16 12 C 0.13 3.94 5.70 84.23 0.48 4.42 16 13 N -0.59 -19.67 2.47 -832.18 -2.05 -21.72 16 14 C 0.52 19.05 7.66 87.66 0.67 19.72 16 15 O -0.58 -25.23 15.47 -3.06 -0.05 -25.28 16 16 C -0.07 -2.12 4.74 29.10 0.14 -1.98 16 17 C -0.17 -5.26 5.00 24.59 0.12 -5.13 16 18 C -0.13 -3.45 10.05 21.22 0.21 -3.24 16 19 C -0.14 -3.12 10.18 21.22 0.22 -2.90 16 20 C -0.21 -5.31 11.23 66.72 0.75 -4.56 16 21 S 0.04 1.32 23.33 -56.49 -1.32 0.01 16 22 C 0.09 2.71 5.01 87.39 0.44 3.15 16 23 C 0.17 7.19 5.17 86.40 0.45 7.64 16 24 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 25 H 0.06 2.03 7.58 -2.39 -0.02 2.01 16 26 H 0.03 1.37 8.02 -2.38 -0.02 1.35 16 27 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 28 H 0.02 1.00 7.90 -2.39 -0.02 0.98 16 29 H 0.10 2.35 8.06 -2.39 -0.02 2.33 16 30 H 0.07 2.30 7.12 -2.39 -0.02 2.28 16 31 H 0.09 3.26 7.31 -2.39 -0.02 3.24 16 32 H 0.14 3.28 7.38 -2.39 -0.02 3.27 16 33 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 34 H 0.17 2.70 8.06 -2.91 -0.02 2.68 16 35 H 0.19 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.10 2.40 6.38 -2.39 -0.02 2.38 16 37 H 0.09 2.35 7.73 -2.38 -0.02 2.33 16 38 H 0.03 1.15 8.00 -2.39 -0.02 1.13 16 39 H 0.04 2.17 5.72 -2.39 -0.01 2.15 16 Total: -1.00 -69.61 325.54 3.45 -66.17 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.04 Total: 11.77 kcal Atomic # 6 Polarization: -1.70 SS G_CDS: 5.33 Total: 3.63 kcal Atomic # 7 Polarization: -100.56 SS G_CDS: -3.59 Total: -104.15 kcal Atomic # 8 Polarization: -25.23 SS G_CDS: -0.05 Total: -25.28 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Atomic # 16 Polarization: 1.32 SS G_CDS: -1.32 Total: 0.01 kcal Total: -69.61 3.45 -66.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980632507.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.301 kcal (2) G-P(sol) polarization free energy of solvation -69.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds