Wall clock time and date at job start Fri Apr 10 2020 20:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33820 * 124.51595 * 2 1 4 4 C 1.37474 * 115.09792 * 179.97438 * 3 2 1 5 5 C 1.36647 * 113.29654 * 359.97438 * 4 3 2 6 6 C 1.46577 * 125.46058 * 179.97438 * 5 4 3 7 7 O 1.21704 * 119.99897 * 7.65667 * 6 5 4 8 8 N 1.34778 * 120.00635 * 187.66475 * 6 5 4 9 9 C 1.48210 * 119.97611 * 183.23551 * 8 6 5 10 10 C 1.47137 * 110.34839 * 102.48302 * 9 8 6 11 11 C 1.53798 * 111.83987 * 58.29507 * 10 9 8 12 12 N 1.43466 * 107.96126 * 281.67323 * 11 10 9 13 13 C 1.36932 * 118.94398 * 273.62477 * 12 11 10 14 14 H 1.07999 * 119.99551 * 22.89692 * 13 12 11 15 15 C 1.38807 * 120.00463 * 202.88763 * 13 12 11 16 16 N 1.31628 * 119.99949 * 22.03416 * 15 13 12 17 17 Si 1.86797 * 120.00254 * 202.02875 * 15 13 12 18 18 H 1.48501 * 109.47242 * 60.00354 * 17 15 13 19 19 H 1.48504 * 109.47102 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47276 * 300.00290 * 17 15 13 21 21 C 1.48865 * 122.15575 * 93.54734 * 12 11 10 22 22 C 1.43619 * 119.96675 * 3.24964 * 8 6 5 23 23 S 1.70612 * 124.52385 * 180.26375 * 2 1 3 24 24 H 1.09005 * 109.47063 * 90.00719 * 1 2 3 25 25 H 1.09000 * 109.47158 * 210.00127 * 1 2 3 26 26 H 1.09000 * 109.47653 * 330.00250 * 1 2 3 27 27 H 1.08000 * 122.45332 * 0.02562 * 3 2 1 28 28 H 1.07996 * 123.34865 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.32110 * 222.75072 * 9 8 6 30 30 H 1.09002 * 109.32343 * 342.39010 * 9 8 6 31 31 H 1.08998 * 109.00768 * 178.90567 * 10 9 8 32 32 H 1.09000 * 109.00813 * 297.76775 * 10 9 8 33 33 H 1.09001 * 109.76541 * 41.29097 * 11 10 9 34 34 H 1.08999 * 109.76095 * 162.00980 * 11 10 9 35 35 H 0.96993 * 120.00159 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.53748 * 200.74452 * 21 12 11 37 37 H 1.09001 * 109.39998 * 80.72358 * 21 12 11 38 38 H 1.09002 * 108.87302 * 31.45689 * 22 8 6 39 39 H 1.09003 * 108.87239 * 149.98779 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8777 0.0006 5 6 3.9493 -0.4489 0.0016 6 6 5.3123 -0.9881 0.0018 7 8 6.2624 -0.2404 0.1415 8 7 5.5136 -2.3117 -0.1528 9 6 6.8865 -2.8654 -0.0808 10 6 7.1116 -3.5069 1.2241 11 6 6.0988 -4.6333 1.4903 12 7 4.8625 -4.0296 1.8969 13 6 4.6753 -3.7293 3.2197 14 1 5.5280 -3.5906 3.8679 15 6 3.3896 -3.6029 3.7276 16 7 2.3780 -4.1722 3.1071 17 14 3.0952 -2.6251 5.2917 18 1 3.5406 -1.2229 5.0902 19 1 1.6472 -2.6425 5.6212 20 1 3.8636 -3.2330 6.4076 21 6 3.7768 -3.7172 0.9276 22 6 4.3974 -3.1845 -0.3876 23 16 2.4740 -1.4056 -0.0065 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.8428 2.0966 0.0004 28 1 4.3548 1.6705 0.0010 29 1 7.0202 -3.6022 -0.8728 30 1 7.6080 -2.0590 -0.2127 31 1 8.1189 -3.9227 1.2462 32 1 7.0204 -2.7563 2.0092 33 1 5.9442 -5.2127 0.5800 34 1 6.4704 -5.2834 2.2823 35 1 1.4796 -4.0835 3.4617 36 1 3.1168 -2.9600 1.3509 37 1 3.2057 -4.6221 0.7196 38 1 3.6339 -2.6390 -0.9422 39 1 4.7316 -4.0307 -0.9879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980638714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:44 Heat of formation + Delta-G solvation = 35.548937 kcal Electronic energy + Delta-G solvation = -22813.107172 eV Core-core repulsion = 19655.675116 eV Total energy + Delta-G solvation = -3157.432056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.77128 -37.74204 -36.65491 -34.27719 -33.09080 -31.55725 -30.90943 -27.93470 -26.99840 -25.35982 -23.76837 -23.31577 -22.25562 -19.95895 -19.72152 -18.11018 -17.71497 -16.53475 -16.01528 -15.47589 -15.24941 -14.66965 -14.38747 -13.97447 -13.82176 -13.58786 -13.40415 -13.00040 -12.80987 -12.55212 -12.33355 -12.12630 -11.96482 -11.83632 -11.48007 -11.37045 -11.09546 -10.75603 -10.61551 -10.42830 -10.26732 -9.97590 -9.85390 -9.75328 -9.49477 -8.53244 -8.34806 -8.03162 -7.83948 -6.77859 -5.85342 -3.20550 0.92942 1.93935 2.38060 2.75437 3.37749 3.42210 3.43319 3.49301 3.73104 4.49346 4.95837 5.07161 5.11625 5.32638 5.40821 5.51737 5.58595 5.60072 5.64836 5.71510 5.82536 5.88081 5.95999 5.98090 6.05064 6.21222 6.31908 6.40653 6.46631 6.55516 6.74509 6.78890 6.84091 6.99103 7.24704 7.32183 7.79489 7.87762 8.37630 8.60296 9.14554 9.83905 10.28227 11.23349 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.009409 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.880988 B = 2975.179617 C = 4266.388451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.250 4.250 3 C -0.165 4.165 4 C -0.062 4.062 5 C -0.276 4.276 6 C 0.596 3.404 7 O -0.549 6.549 8 N -0.583 5.583 9 C 0.132 3.868 10 C -0.172 4.172 11 C 0.162 3.838 12 N -0.587 5.587 13 C -0.257 4.257 14 H 0.066 0.934 15 C 0.010 3.990 16 N -0.900 5.900 17 Si 0.887 3.113 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.282 1.282 21 C 0.151 3.849 22 C 0.064 3.936 23 S 0.288 5.712 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.131 0.869 28 H 0.144 0.856 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.049 0.951 35 H 0.254 0.746 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 3.501 -9.880 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.369 4.369 3 C -0.195 4.195 4 C -0.096 4.096 5 C -0.396 4.396 6 C 0.384 3.616 7 O -0.430 6.430 8 N -0.313 5.313 9 C 0.011 3.989 10 C -0.213 4.213 11 C 0.033 3.967 12 N -0.308 5.308 13 C -0.387 4.387 14 H 0.084 0.916 15 C -0.189 4.189 16 N -0.544 5.544 17 Si 0.717 3.283 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.208 1.208 21 C 0.024 3.976 22 C -0.064 4.064 23 S 0.559 5.441 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.148 0.852 28 H 0.162 0.838 29 H 0.082 0.918 30 H 0.099 0.901 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.162 2.310 -9.789 10.124 hybrid contribution -0.073 2.171 1.050 2.412 sum -1.235 4.481 -8.739 9.898 Atomic orbital electron populations 1.20310 0.88315 1.03127 1.02258 1.25170 1.02224 1.02000 1.07503 1.19760 0.92593 0.99019 1.08128 1.20546 0.95968 0.94991 0.98110 1.24585 0.97353 0.98198 1.19480 1.16941 0.86746 0.81910 0.75957 1.90732 1.42379 1.58198 1.51662 1.47202 1.08001 1.05785 1.70326 1.20581 0.82382 0.97902 0.98046 1.21900 0.99907 1.01669 0.97867 1.20310 0.86709 0.92138 0.97521 1.43603 1.13502 1.69492 1.04210 1.19102 0.91833 1.42010 0.85728 0.91637 1.24805 0.96461 0.99834 0.97791 1.70055 0.99380 1.43408 1.41606 0.86587 0.76916 0.81173 0.83628 1.20988 1.21502 1.20817 1.22279 0.90131 0.99414 0.85758 1.22596 0.88688 0.94020 1.01047 1.84407 0.92378 1.03053 1.64216 0.91028 0.91121 0.91169 0.85155 0.83830 0.91828 0.90146 0.92327 0.91182 0.94755 0.93297 0.93575 0.88987 0.93289 0.91304 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 10.31 36.01 0.37 -0.62 16 2 C -0.25 -3.85 6.28 -35.86 -0.23 -4.07 16 3 C -0.16 -2.53 10.00 -41.41 -0.41 -2.94 16 4 C -0.06 -1.08 10.02 -40.43 -0.41 -1.49 16 5 C -0.28 -5.27 6.20 -36.80 -0.23 -5.50 16 6 C 0.60 12.38 7.63 -12.90 -0.10 12.28 16 7 O -0.55 -12.58 16.27 5.19 0.08 -12.50 16 8 N -0.58 -11.01 2.45 -178.24 -0.44 -11.44 16 9 C 0.13 2.23 5.72 -5.92 -0.03 2.19 16 10 C -0.17 -3.09 5.64 -29.13 -0.16 -3.26 16 11 C 0.16 3.19 5.63 -5.23 -0.03 3.16 16 12 N -0.59 -13.85 2.54 -171.99 -0.44 -14.28 16 13 C -0.26 -6.89 9.24 -15.06 -0.14 -7.03 16 14 H 0.07 1.78 7.92 -52.49 -0.42 1.36 16 15 C 0.01 0.26 4.75 -17.43 -0.08 0.18 16 16 N -0.90 -24.56 11.26 55.49 0.63 -23.94 16 17 Si 0.89 21.82 29.61 -169.99 -5.03 16.78 16 18 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.15 3.28 4.57 -1.74 -0.01 3.27 16 22 C 0.06 1.13 4.74 -4.58 -0.02 1.11 16 23 S 0.29 4.96 15.24 -107.50 -1.64 3.32 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.13 1.66 8.06 -52.49 -0.42 1.23 16 28 H 0.14 2.34 8.06 -52.49 -0.42 1.92 16 29 H 0.06 0.89 8.05 -51.93 -0.42 0.47 16 30 H 0.08 1.38 7.09 -51.93 -0.37 1.02 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.51 7.91 -51.93 -0.41 1.10 16 33 H 0.03 0.61 7.59 -51.93 -0.39 0.22 16 34 H 0.05 0.98 8.02 -51.93 -0.42 0.57 16 35 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 36 H 0.09 2.15 3.77 -33.52 -0.13 2.02 16 37 H 0.05 1.12 8.03 -51.93 -0.42 0.70 16 38 H 0.07 1.13 4.34 -22.08 -0.10 1.04 16 39 H 0.08 1.17 7.72 -51.93 -0.40 0.77 16 LS Contribution 316.86 15.07 4.78 4.78 Total: -1.00 -30.80 316.86 -8.67 -39.47 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -5.13 Total: 0.51 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.48 Total: -2.70 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.25 Total: -49.67 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.08 Total: -12.50 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.78 kcal Atomic # 16 Polarization: 4.96 SS G_CDS: -1.64 Total: 3.32 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.80 -8.67 -39.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980638714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.023 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds