Wall clock time and date at job start Fri Apr 10 2020 20:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33820 * 124.51595 * 2 1 4 4 C 1.37474 * 115.09792 * 179.97438 * 3 2 1 5 5 C 1.36647 * 113.29654 * 359.97438 * 4 3 2 6 6 C 1.46577 * 125.46058 * 179.97438 * 5 4 3 7 7 O 1.21704 * 119.99897 * 7.65667 * 6 5 4 8 8 N 1.34778 * 120.00635 * 187.66475 * 6 5 4 9 9 C 1.48210 * 119.97611 * 183.23551 * 8 6 5 10 10 C 1.47137 * 110.34839 * 102.48302 * 9 8 6 11 11 C 1.53798 * 111.83987 * 58.29507 * 10 9 8 12 12 N 1.43466 * 107.96126 * 281.67323 * 11 10 9 13 13 C 1.36932 * 118.94398 * 273.62477 * 12 11 10 14 14 H 1.07999 * 119.99551 * 22.89692 * 13 12 11 15 15 C 1.38807 * 120.00463 * 202.88763 * 13 12 11 16 16 N 1.31628 * 119.99949 * 22.03416 * 15 13 12 17 17 Si 1.86797 * 120.00254 * 202.02875 * 15 13 12 18 18 H 1.48501 * 109.47242 * 60.00354 * 17 15 13 19 19 H 1.48504 * 109.47102 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47276 * 300.00290 * 17 15 13 21 21 C 1.48865 * 122.15575 * 93.54734 * 12 11 10 22 22 C 1.43619 * 119.96675 * 3.24964 * 8 6 5 23 23 S 1.70612 * 124.52385 * 180.26375 * 2 1 3 24 24 H 1.09005 * 109.47063 * 90.00719 * 1 2 3 25 25 H 1.09000 * 109.47158 * 210.00127 * 1 2 3 26 26 H 1.09000 * 109.47653 * 330.00250 * 1 2 3 27 27 H 1.08000 * 122.45332 * 0.02562 * 3 2 1 28 28 H 1.07996 * 123.34865 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.32110 * 222.75072 * 9 8 6 30 30 H 1.09002 * 109.32343 * 342.39010 * 9 8 6 31 31 H 1.08998 * 109.00768 * 178.90567 * 10 9 8 32 32 H 1.09000 * 109.00813 * 297.76775 * 10 9 8 33 33 H 1.09001 * 109.76541 * 41.29097 * 11 10 9 34 34 H 1.08999 * 109.76095 * 162.00980 * 11 10 9 35 35 H 0.96993 * 120.00159 * 180.02562 * 16 15 13 36 36 H 1.09002 * 109.53748 * 200.74452 * 21 12 11 37 37 H 1.09001 * 109.39998 * 80.72358 * 21 12 11 38 38 H 1.09002 * 108.87302 * 31.45689 * 22 8 6 39 39 H 1.09003 * 108.87239 * 149.98779 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2653 1.1026 0.0000 4 6 3.6215 0.8777 0.0006 5 6 3.9493 -0.4489 0.0016 6 6 5.3123 -0.9881 0.0018 7 8 6.2624 -0.2404 0.1415 8 7 5.5136 -2.3117 -0.1528 9 6 6.8865 -2.8654 -0.0808 10 6 7.1116 -3.5069 1.2241 11 6 6.0988 -4.6333 1.4903 12 7 4.8625 -4.0296 1.8969 13 6 4.6753 -3.7293 3.2197 14 1 5.5280 -3.5906 3.8679 15 6 3.3896 -3.6029 3.7276 16 7 2.3780 -4.1722 3.1071 17 14 3.0952 -2.6251 5.2917 18 1 3.5406 -1.2229 5.0902 19 1 1.6472 -2.6425 5.6212 20 1 3.8636 -3.2330 6.4076 21 6 3.7768 -3.7172 0.9276 22 6 4.3974 -3.1845 -0.3876 23 16 2.4740 -1.4056 -0.0065 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.8428 2.0966 0.0004 28 1 4.3548 1.6705 0.0010 29 1 7.0202 -3.6022 -0.8728 30 1 7.6080 -2.0590 -0.2127 31 1 8.1189 -3.9227 1.2462 32 1 7.0204 -2.7563 2.0092 33 1 5.9442 -5.2127 0.5800 34 1 6.4704 -5.2834 2.2823 35 1 1.4796 -4.0835 3.4617 36 1 3.1168 -2.9600 1.3509 37 1 3.2057 -4.6221 0.7196 38 1 3.6339 -2.6390 -0.9422 39 1 4.7316 -4.0307 -0.9879 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980638714.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:07:44 Heat of formation + Delta-G solvation = 17.823210 kcal Electronic energy + Delta-G solvation = -22813.875817 eV Core-core repulsion = 19655.675116 eV Total energy + Delta-G solvation = -3158.200701 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27746 -39.13293 -38.17791 -35.99249 -34.62423 -33.01253 -32.51757 -29.53683 -28.38882 -26.92814 -25.53786 -24.62251 -23.66231 -21.60788 -21.15445 -19.47294 -19.27379 -18.30785 -17.53193 -16.90769 -16.78300 -16.24088 -16.08393 -15.66843 -15.20342 -15.04966 -14.77871 -14.49936 -14.06552 -13.96424 -13.89414 -13.66692 -13.23021 -13.15574 -13.04148 -12.84555 -12.66014 -12.59078 -12.39984 -12.13196 -11.86037 -11.72330 -11.48212 -11.21007 -11.03630 -10.49841 -9.78283 -9.41946 -9.21687 -8.66325 -7.87994 -5.23251 -0.41135 0.60269 1.09168 1.38864 1.43071 1.43952 1.49015 2.00219 2.26372 2.50081 3.23771 3.57123 3.62499 3.94716 4.06387 4.15457 4.23200 4.34071 4.42719 4.45573 4.52371 4.57831 4.68933 4.74139 4.77519 4.90581 5.00870 5.08259 5.11976 5.22199 5.25253 5.27140 5.46330 5.52181 5.58405 5.70220 5.72855 6.37214 6.40495 7.07699 7.17712 7.94947 8.32812 9.17288 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.012067 B = 0.009409 C = 0.006561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.880988 B = 2975.179617 C = 4266.388451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.239 4.239 3 C -0.170 4.170 4 C -0.060 4.060 5 C -0.314 4.314 6 C 0.585 3.415 7 O -0.584 6.584 8 N -0.583 5.583 9 C 0.127 3.873 10 C -0.157 4.157 11 C 0.156 3.844 12 N -0.601 5.601 13 C -0.265 4.265 14 H 0.051 0.949 15 C -0.027 4.027 16 N -0.913 5.913 17 Si 0.929 3.071 18 H -0.296 1.296 19 H -0.284 1.284 20 H -0.279 1.279 21 C 0.152 3.848 22 C 0.071 3.929 23 S 0.273 5.727 24 H 0.097 0.903 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.162 0.838 28 H 0.147 0.853 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.025 0.975 33 H 0.062 0.938 34 H 0.040 0.960 35 H 0.252 0.748 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.085 0.915 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 3.659 -11.184 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.358 4.358 3 C -0.199 4.199 4 C -0.095 4.095 5 C -0.434 4.434 6 C 0.375 3.625 7 O -0.468 6.468 8 N -0.312 5.312 9 C 0.007 3.993 10 C -0.198 4.198 11 C 0.029 3.971 12 N -0.324 5.324 13 C -0.395 4.395 14 H 0.068 0.932 15 C -0.224 4.224 16 N -0.559 5.559 17 Si 0.759 3.241 18 H -0.224 1.224 19 H -0.210 1.210 20 H -0.205 1.205 21 C 0.025 3.975 22 C -0.056 4.056 23 S 0.544 5.456 24 H 0.115 0.885 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.179 0.821 28 H 0.165 0.835 29 H 0.123 0.877 30 H 0.093 0.907 31 H 0.110 0.890 32 H 0.044 0.956 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.052 0.948 38 H 0.102 0.898 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -1.881 2.433 -11.105 11.523 hybrid contribution 0.142 2.146 1.455 2.596 sum -1.739 4.579 -9.650 10.822 Atomic orbital electron populations 1.20472 0.85715 1.03881 1.04133 1.25579 1.03906 1.00858 1.05495 1.20028 0.91624 1.00531 1.07738 1.20837 0.97224 0.94578 0.96846 1.24623 0.97324 0.99250 1.22246 1.17319 0.87166 0.82465 0.75517 1.90690 1.43526 1.59075 1.53522 1.47356 1.09023 1.05425 1.69440 1.20776 0.81431 0.98538 0.98592 1.21717 1.01238 0.99823 0.97032 1.20486 0.85591 0.92674 0.98327 1.43826 1.14946 1.70070 1.03532 1.19219 0.91471 1.41519 0.87333 0.93154 1.25215 0.96528 1.00854 0.99774 1.70124 0.99252 1.44171 1.42339 0.85926 0.76880 0.79426 0.81877 1.22378 1.20961 1.20478 1.22190 0.89761 0.98461 0.87064 1.22497 0.88888 0.94982 0.99223 1.84303 0.92210 1.04217 1.64838 0.88481 0.91387 0.89352 0.82081 0.83525 0.87729 0.90660 0.88975 0.95602 0.92000 0.94186 0.93840 0.90697 0.94761 0.89762 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 10.31 71.24 0.73 -1.03 16 2 C -0.24 -6.86 6.28 24.68 0.15 -6.70 16 3 C -0.17 -4.86 10.00 21.08 0.21 -4.65 16 4 C -0.06 -2.05 10.02 21.72 0.22 -1.83 16 5 C -0.31 -11.98 6.20 24.07 0.15 -11.83 16 6 C 0.59 24.47 7.63 86.42 0.66 25.13 16 7 O -0.58 -27.32 16.27 -4.36 -0.07 -27.39 16 8 N -0.58 -21.50 2.45 -836.05 -2.05 -23.55 16 9 C 0.13 4.06 5.72 84.23 0.48 4.54 16 10 C -0.16 -5.47 5.64 29.04 0.16 -5.30 16 11 C 0.16 5.99 5.63 87.21 0.49 6.49 16 12 N -0.60 -28.37 2.54 -698.04 -1.77 -30.14 16 13 C -0.26 -14.42 9.24 84.03 0.78 -13.64 16 14 H 0.05 2.82 7.92 -2.91 -0.02 2.80 16 15 C -0.03 -1.45 4.75 84.86 0.40 -1.05 16 16 N -0.91 -50.12 11.26 21.65 0.24 -49.87 16 17 Si 0.93 45.26 29.61 68.60 2.03 47.29 16 18 H -0.30 -14.93 7.11 99.48 0.71 -14.23 16 19 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 20 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 21 C 0.15 6.52 4.57 86.56 0.40 6.92 16 22 C 0.07 2.41 4.74 87.55 0.42 2.82 16 23 S 0.27 9.19 15.24 -56.49 -0.86 8.33 16 24 H 0.10 1.59 8.14 -2.38 -0.02 1.58 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.16 3.55 8.06 -2.91 -0.02 3.53 16 28 H 0.15 4.76 8.06 -2.91 -0.02 4.73 16 29 H 0.10 2.52 8.05 -2.39 -0.02 2.50 16 30 H 0.07 2.52 7.09 -2.39 -0.02 2.50 16 31 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 32 H 0.03 1.11 7.91 -2.39 -0.02 1.10 16 33 H 0.06 2.03 7.59 -2.39 -0.02 2.02 16 34 H 0.04 1.59 8.02 -2.39 -0.02 1.57 16 35 H 0.25 13.49 8.31 -92.71 -0.77 12.72 16 36 H 0.08 3.52 3.77 -14.09 -0.05 3.46 16 37 H 0.03 1.56 8.03 -2.39 -0.02 1.54 16 38 H 0.09 2.65 4.34 -21.37 -0.09 2.56 16 39 H 0.11 2.96 7.72 -2.39 -0.02 2.94 16 Total: -1.00 -67.66 316.86 3.70 -63.97 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.93 Total: 11.51 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.25 Total: -0.15 kcal Atomic # 7 Polarization: -99.98 SS G_CDS: -3.58 Total: -103.56 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.07 Total: -27.39 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 9.19 SS G_CDS: -0.86 Total: 8.33 kcal Total: -67.66 3.70 -63.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980638714.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.789 kcal (2) G-P(sol) polarization free energy of solvation -67.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds