Wall clock time and date at job start Fri Apr 10 2020 20:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.70448 * 124.59508 * 2 1 4 4 C 1.75500 * 92.44589 * 180.22477 * 3 2 1 5 5 C 1.32768 * 110.57819 * 359.80387 * 4 3 2 6 6 C 1.36009 * 124.59208 * 179.86349 * 2 1 3 7 7 C 1.47197 * 123.46118 * 359.97438 * 6 2 1 8 8 O 1.21630 * 119.99872 * 302.59638 * 7 6 2 9 9 N 1.34776 * 119.99908 * 122.59871 * 7 6 2 10 10 C 1.48216 * 119.96712 * 183.50308 * 9 7 6 11 11 C 1.47142 * 110.34191 * 102.51139 * 10 9 7 12 12 C 1.53798 * 111.84111 * 58.29725 * 11 10 9 13 13 N 1.43467 * 107.95673 * 281.66532 * 12 11 10 14 14 C 1.36940 * 118.93855 * 273.60958 * 13 12 11 15 15 H 1.07992 * 119.99836 * 24.08244 * 14 13 12 16 16 C 1.38814 * 119.99664 * 204.08406 * 14 13 12 17 17 N 1.31619 * 119.99672 * 207.51754 * 16 14 13 18 18 Si 1.86796 * 120.00159 * 27.52437 * 16 14 13 19 19 H 1.48502 * 109.47010 * 266.26391 * 18 16 14 20 20 H 1.48504 * 109.47177 * 146.26596 * 18 16 14 21 21 H 1.48502 * 109.47423 * 26.26481 * 18 16 14 22 22 C 1.48854 * 122.12039 * 93.89060 * 13 12 11 23 23 C 1.43615 * 119.97031 * 3.52205 * 9 7 6 24 24 H 1.09005 * 109.46776 * 270.13336 * 1 2 3 25 25 H 1.08996 * 109.46760 * 30.13760 * 1 2 3 26 26 H 1.08998 * 109.46712 * 150.14164 * 1 2 3 27 27 H 1.08004 * 124.70803 * 179.80555 * 4 3 2 28 28 H 1.08003 * 123.45849 * 180.02562 * 5 4 3 29 29 H 1.09000 * 109.32312 * 342.24266 * 10 9 7 30 30 H 1.08999 * 109.17644 * 222.68550 * 10 9 7 31 31 H 1.08999 * 109.00885 * 297.68765 * 11 10 9 32 32 H 1.08996 * 108.94229 * 178.85799 * 11 10 9 33 33 H 1.08997 * 109.76315 * 162.05071 * 12 11 10 34 34 H 1.09001 * 109.80623 * 41.30092 * 12 11 10 35 35 H 0.96997 * 120.00103 * 5.09593 * 17 16 14 36 36 H 1.09005 * 109.48487 * 80.34711 * 22 13 12 37 37 H 1.09001 * 109.48455 * 200.37892 * 22 13 12 38 38 H 1.08999 * 108.87752 * 31.42257 * 23 9 7 39 39 H 1.08996 * 108.87958 * 149.96493 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4748 1.4031 0.0000 4 6 3.9606 0.4692 -0.0069 5 6 3.6944 -0.8315 -0.0047 6 6 2.2792 -1.1196 0.0027 7 6 1.7290 -2.4849 0.0065 8 8 0.9757 -2.8346 0.8951 9 7 2.0601 -3.3476 -0.9747 10 6 1.4458 -4.6959 -1.0135 11 6 0.3863 -4.7461 -2.0334 12 6 0.9213 -4.3950 -3.4319 13 7 1.0552 -2.9687 -3.5091 14 6 -0.0295 -2.2206 -3.8819 15 1 -1.0274 -2.6081 -3.7394 16 6 0.1537 -0.9642 -4.4431 17 7 -0.7766 -0.0426 -4.3112 18 14 1.7205 -0.5817 -5.3855 19 1 2.7085 0.0438 -4.4702 20 1 1.4136 0.3542 -6.4970 21 1 2.2849 -1.8390 -5.9387 22 6 2.3368 -2.2763 -3.2028 23 6 3.0080 -2.9597 -1.9814 24 1 -0.3633 0.0024 1.0277 25 1 -0.3633 0.8887 -0.5160 26 1 -0.3633 -0.8913 -0.5116 27 1 4.9538 0.8937 -0.0122 28 1 4.4577 -1.5955 -0.0076 29 1 1.0182 -4.9256 -0.0376 30 1 2.2129 -5.4321 -1.2537 31 1 -0.3982 -4.0385 -1.7655 32 1 -0.0351 -5.7510 -2.0566 33 1 0.2210 -4.7411 -4.1920 34 1 1.8929 -4.8651 -3.5845 35 1 -1.5562 -0.2157 -3.7606 36 1 2.9986 -2.3374 -4.0668 37 1 2.1383 -1.2300 -2.9702 38 1 3.7268 -2.2684 -1.5413 39 1 3.5387 -3.8469 -2.3268 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981113083.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 20:08:08 Heat of formation + Delta-G solvation = 31.323421 kcal Electronic energy + Delta-G solvation = -23206.132709 eV Core-core repulsion = 20048.517421 eV Total energy + Delta-G solvation = -3157.615288 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 294.114 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.05982 -37.44601 -36.53361 -34.33959 -32.72824 -31.71747 -31.38730 -27.92012 -26.88287 -25.69672 -23.64104 -23.18467 -22.12006 -20.24654 -19.80232 -18.27508 -17.23569 -16.98782 -16.12197 -16.06951 -15.10237 -14.97318 -14.39106 -13.91918 -13.80441 -13.50035 -13.32212 -12.94617 -12.88026 -12.70789 -12.43903 -12.23636 -11.97722 -11.73890 -11.53819 -11.38930 -11.20677 -10.90866 -10.74336 -10.40916 -10.29076 -10.01155 -9.80628 -9.44067 -9.23430 -8.51998 -8.42866 -8.26717 -8.00922 -6.96185 -6.31538 -3.24431 1.20075 1.76989 2.14262 2.40432 3.19038 3.40623 3.52982 3.65780 3.67465 4.61547 4.88152 4.94135 5.03009 5.27604 5.38467 5.43835 5.48242 5.55432 5.62084 5.79897 5.80400 5.87141 5.91321 5.95990 6.05819 6.15631 6.26070 6.30010 6.36775 6.49401 6.51570 6.55280 6.60493 6.70909 6.89897 7.11985 7.84642 8.08088 8.47576 8.59061 9.05174 9.69937 10.17310 11.12072 Molecular weight = 294.11amu Principal moments of inertia in cm(-1) A = 0.012842 B = 0.009494 C = 0.007058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.844497 B = 2948.533113 C = 3965.925893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.138 4.138 3 S 0.168 5.832 4 C -0.239 4.239 5 C -0.106 4.106 6 C -0.162 4.162 7 C 0.592 3.408 8 O -0.548 6.548 9 N -0.578 5.578 10 C 0.129 3.871 11 C -0.168 4.168 12 C 0.162 3.838 13 N -0.597 5.597 14 C -0.349 4.349 15 H 0.066 0.934 16 C -0.004 4.004 17 N -0.910 5.910 18 Si 1.040 2.960 19 H -0.294 1.294 20 H -0.300 1.300 21 H -0.288 1.288 22 C 0.111 3.889 23 C 0.086 3.914 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.165 0.835 28 H 0.146 0.854 29 H 0.080 0.920 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.034 0.966 35 H 0.264 0.736 36 H 0.033 0.967 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.157 -2.255 7.605 12.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.258 4.258 3 S 0.434 5.566 4 C -0.374 4.374 5 C -0.136 4.136 6 C -0.178 4.178 7 C 0.379 3.621 8 O -0.427 6.427 9 N -0.309 5.309 10 C 0.008 3.992 11 C -0.209 4.209 12 C 0.034 3.966 13 N -0.319 5.319 14 C -0.477 4.477 15 H 0.083 0.917 16 C -0.206 4.206 17 N -0.549 5.549 18 Si 0.871 3.129 19 H -0.222 1.222 20 H -0.228 1.228 21 H -0.215 1.215 22 C -0.015 4.015 23 C -0.040 4.040 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.183 0.817 28 H 0.163 0.837 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.074 0.926 36 H 0.050 0.950 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.209 0.228 7.154 12.468 hybrid contribution -0.341 -2.715 0.620 2.805 sum 9.868 -2.487 7.774 12.806 Atomic orbital electron populations 1.20367 0.86960 1.04458 1.02337 1.24277 1.01587 0.96408 1.03520 1.82926 0.94940 1.07822 1.70961 1.25300 1.02181 0.97178 1.12704 1.21039 0.94170 0.96099 1.02266 1.20023 0.92893 0.93765 1.11166 1.17554 0.79837 0.83545 0.81175 1.90725 1.36965 1.77724 1.37275 1.47243 1.43569 1.14552 1.25528 1.20601 0.95957 0.82152 1.00520 1.21826 0.99421 1.00751 0.98901 1.20326 0.97599 0.85285 0.93433 1.43916 1.08781 1.00892 1.78332 1.20141 0.86595 1.00680 1.40326 0.91667 1.25979 1.03636 0.92050 0.98946 1.70851 1.11591 1.32418 1.40019 0.84174 0.76239 0.75042 0.77403 1.22218 1.22753 1.21459 1.22518 0.88016 0.97383 0.93572 1.22059 0.91269 1.00221 0.90405 0.90673 0.90790 0.89751 0.81706 0.83679 0.90185 0.91949 0.91235 0.92442 0.93122 0.94785 0.92634 0.94959 0.90968 0.90247 0.91512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 9.87 36.01 0.36 -1.18 16 2 C -0.14 -2.51 6.34 -35.11 -0.22 -2.73 16 3 S 0.17 2.47 22.97 -107.50 -2.47 0.00 16 4 C -0.24 -3.14 11.12 28.86 0.32 -2.82 16 5 C -0.11 -1.54 8.31 -39.02 -0.32 -1.87 16 6 C -0.16 -2.95 5.02 -104.63 -0.53 -3.48 16 7 C 0.59 11.76 6.55 -12.62 -0.08 11.68 16 8 O -0.55 -12.22 16.34 5.25 0.09 -12.13 16 9 N -0.58 -10.49 2.46 -177.79 -0.44 -10.92 16 10 C 0.13 2.13 5.72 -5.91 -0.03 2.10 16 11 C -0.17 -3.01 5.64 -29.13 -0.16 -3.18 16 12 C 0.16 3.16 5.63 -5.23 -0.03 3.13 16 13 N -0.60 -13.81 2.32 -171.78 -0.40 -14.21 16 14 C -0.35 -9.54 9.50 -15.06 -0.14 -9.69 16 15 H 0.07 1.94 8.06 -52.49 -0.42 1.52 16 16 C 0.00 -0.11 5.03 -17.43 -0.09 -0.20 16 17 N -0.91 -27.41 13.70 55.49 0.76 -26.65 16 18 Si 1.04 25.73 24.54 -169.99 -4.17 21.56 16 19 H -0.29 -6.88 6.76 56.52 0.38 -6.50 16 20 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 21 H -0.29 -6.82 6.80 56.52 0.38 -6.44 16 22 C 0.11 2.34 4.59 -1.56 -0.01 2.33 16 23 C 0.09 1.46 5.04 -4.39 -0.02 1.43 16 24 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 26 H 0.08 1.85 7.61 -51.93 -0.40 1.45 16 27 H 0.17 1.61 8.06 -52.48 -0.42 1.19 16 28 H 0.15 1.75 7.24 -52.48 -0.38 1.37 16 29 H 0.08 1.36 7.09 -51.93 -0.37 0.99 16 30 H 0.06 0.85 8.05 -51.93 -0.42 0.43 16 31 H 0.07 1.52 7.91 -51.93 -0.41 1.11 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.05 1.02 8.02 -51.93 -0.42 0.60 16 34 H 0.03 0.59 7.59 -51.93 -0.39 0.19 16 35 H 0.26 7.95 8.73 -40.82 -0.36 7.59 16 36 H 0.03 0.67 6.13 -51.93 -0.32 0.35 16 37 H 0.07 1.71 5.72 -51.93 -0.30 1.42 16 38 H 0.08 1.20 4.31 -51.93 -0.22 0.97 16 39 H 0.07 0.96 7.72 -51.93 -0.40 0.56 16 LS Contribution 318.01 15.07 4.79 4.79 Total: -1.00 -32.10 318.01 -8.13 -40.23 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.32 Total: 1.80 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: -0.97 Total: -4.47 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -0.08 Total: -51.78 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 25.73 SS G_CDS: -4.17 Total: 21.56 kcal Atomic # 16 Polarization: 2.47 SS G_CDS: -2.47 Total: 0.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.10 -8.13 -40.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981113083.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.549 kcal (2) G-P(sol) polarization free energy of solvation -32.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds